Gene annotation
Transcriptome id Sobic.005G112300.1,Sobic.005G112300.2
Synonym PDE323, UBP5, ATUBP5
Functional annotation ubiquitin carboxyl-terminal hydrolase 5, putative, expressed
UniProt A0A1Z5RI23 , A0A1B6PRR0
Pfam PF14533 PF06337 PF13423 PF14533 PF13423 PF06337
Panther DB PTHR24006 PTHR24006:SF520
NCBI CDD -
KEGG Orthology K11835; USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
Gene Ontology GO:0004843; thiol-dependent ubiquitin-specific protease activity


Orthologs (automatic annotation)
TAIR AT2G40930 : ubiquitin-specific protease 5
RAP-DB (Rice) LOC_Os10g07270.1 : ubiquitin carboxyl-terminal hydrolase 5, putative, expressed
MaizeGDB (Corn) Zm00025a012645
Brachypodium PNT63648 , PNT63647 , KQJ88536
Barley HORVU4Hr1G035290.17 , HORVU4Hr1G035290.16 , HORVU4Hr1G035290.13 , HORVU4Hr1G035290.12 , HORVU4Hr1G035290.11 , HORVU4Hr1G035290.10 , HORVU4Hr1G035290.7 , HORVU4Hr1G035290.6 , HORVU4Hr1G035290.5 , HORVU4Hr1G035290.4 , HORVU4Hr1G035290.3 , HORVU4Hr1G035290.2 , HORVU4Hr1G035290.1 , HORVU4Hr1G035290.9 , HORVU4Hr1G035290.8
Wheat TraesCS4B02G148000 , TraesCS4B02G148000 , TraesCS4B02G148000 , TraesCS4B02G148000 , TraesCS4B02G148000 , TraesCS4D02G153200 , TraesCS4D02G153200 , TraesCS4D02G153200 , TraesCS4D02G153200 , TraesCS4A02G139900 , TraesCS4A02G139900 , TraesCS4A02G139900
Populus -


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cDNA sequences
Sobic.005G112300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G363500 DIRP family protein, putative, expressed -
2 Sobic.007G062800 SET domain containing protein, expressed -
3 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
4 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
5 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
6 Sobic.001G540400 expressed protein -
7 Sobic.010G010700 PHD-finger family protein, expressed -
8 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
9 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
10 Sobic.010G279450 - K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
11 Sobic.002G405800 PHD-finger family protein, expressed -
12 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
13 Sobic.002G397500 SAC3/GANP family protein, expressed -
14 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
15 Sobic.001G241200 protein kinase domain containing protein, expressed -
16 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
17 Sobic.003G059750 - K11797: PHIP, PH-interacting protein
18 Sobic.004G314000 expressed protein -
19 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
20 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4


Gene co-expression network
sample Sobic005G112300 Sobic005G112300 Sobic001G363500 Sobic001G363500 Sobic005G112300--Sobic001G363500 Sobic007G062800 Sobic007G062800 Sobic005G112300--Sobic007G062800 Sobic010G112100 Sobic010G112100 Sobic005G112300--Sobic010G112100 Sobic010G139000 Sobic010G139000 Sobic005G112300--Sobic010G139000 Sobic007G105100 Sobic007G105100 Sobic005G112300--Sobic007G105100 Sobic001G540400 Sobic001G540400 Sobic005G112300--Sobic001G540400 Sobic010G010700 Sobic010G010700 Sobic005G112300--Sobic010G010700 Sobic005G008800 Sobic005G008800 Sobic005G112300--Sobic005G008800 Sobic002G071500 Sobic002G071500 Sobic005G112300--Sobic002G071500 Sobic001G363500--Sobic005G112300 Sobic001G363500--Sobic007G062800 Sobic010G247800 Sobic010G247800 Sobic001G363500--Sobic010G247800 Sobic002G299700 Sobic002G299700 Sobic001G363500--Sobic002G299700 Sobic001G363500--Sobic010G112100 Sobic004G242400 Sobic004G242400 Sobic001G363500--Sobic004G242400 Sobic001G433800 Sobic001G433800 Sobic001G363500--Sobic001G433800 Sobic010G279450 Sobic010G279450 Sobic001G363500--Sobic010G279450 Sobic001G363500--Sobic010G139000 Sobic007G062800--Sobic001G540400 Sobic007G062800--Sobic005G112300 Sobic002G405800 Sobic002G405800 Sobic007G062800--Sobic002G405800 Sobic002G008900 Sobic002G008900 Sobic007G062800--Sobic002G008900 Sobic007G062800--Sobic010G010700 Sobic007G062800--Sobic004G242400 Sobic004G034900 Sobic004G034900 Sobic007G062800--Sobic004G034900 Sobic004G276400 Sobic004G276400 Sobic007G062800--Sobic004G276400 Sobic002G397500 Sobic002G397500 Sobic007G062800--Sobic002G397500 Sobic003G360400 Sobic003G360400 Sobic010G112100--Sobic003G360400 Sobic010G112100--Sobic005G112300 Sobic009G256300 Sobic009G256300 Sobic010G112100--Sobic009G256300 Sobic003G408600 Sobic003G408600 Sobic010G112100--Sobic003G408600 Sobic010G112100--Sobic001G433800 Sobic010G112100--Sobic001G540400 Sobic010G112100--Sobic007G062800 Sobic010G112100--Sobic004G242400 Sobic003G389200 Sobic003G389200 Sobic010G112100--Sobic003G389200 Sobic004G314000 Sobic004G314000 Sobic010G139000--Sobic004G314000 Sobic010G139000--Sobic005G112300 Sobic010G139000--Sobic010G279450 Sobic010G206900 Sobic010G206900 Sobic010G139000--Sobic010G206900 Sobic001G311500 Sobic001G311500 Sobic010G139000--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic010G139000--Sobic001G036050 Sobic010G139000--Sobic010G112100 Sobic010G139000--Sobic010G010700 Sobic010G139000--Sobic005G008800 Sobic007G105100--Sobic005G112300 Sobic001G289600 Sobic001G289600 Sobic007G105100--Sobic001G289600 Sobic007G105100--Sobic003G408600 Sobic007G105100--Sobic010G010700 Sobic007G105100--Sobic007G062800 Sobic007G105100--Sobic005G008800 Sobic007G105100--Sobic001G540400 Sobic007G105100--Sobic003G360400 Sobic007G105100--Sobic010G112100 Sobic001G540400--Sobic001G289600 Sobic001G540400--Sobic003G408600 Sobic001G540400--Sobic007G062800 Sobic001G540400--Sobic005G008800 Sobic001G540400--Sobic004G034900 Sobic001G540400--Sobic005G112300 Sobic003G422500 Sobic003G422500 Sobic001G540400--Sobic003G422500 Sobic001G540400--Sobic002G397500 Sobic001G540400--Sobic010G112100 Sobic010G010700--Sobic010G206900 Sobic010G010700--Sobic004G034900 Sobic010G010700--Sobic004G276400 Sobic001G194200 Sobic001G194200 Sobic010G010700--Sobic001G194200 Sobic010G010700--Sobic007G062800 Sobic010G010700--Sobic002G008900 Sobic010G010700--Sobic005G112300 Sobic008G001200 Sobic008G001200 Sobic010G010700--Sobic008G001200 Sobic003G186000 Sobic003G186000 Sobic010G010700--Sobic003G186000 Sobic005G008800--Sobic001G540400 Sobic005G008800--Sobic003G408600 Sobic005G008800--Sobic005G112300 Sobic005G008800--Sobic007G062800 Sobic005G008800--Sobic001G289600 Sobic005G008800--Sobic004G314000 Sobic008G009700 Sobic008G009700 Sobic005G008800--Sobic008G009700 Sobic001G289800 Sobic001G289800 Sobic005G008800--Sobic001G289800 Sobic009G109200 Sobic009G109200 Sobic005G008800--Sobic009G109200 Sobic002G071500--Sobic005G112300 Sobic002G071500--Sobic003G408600 Sobic002G071500--Sobic008G009700 Sobic010G116600 Sobic010G116600 Sobic002G071500--Sobic010G116600 Sobic001G026200 Sobic001G026200 Sobic002G071500--Sobic001G026200 Sobic002G153700 Sobic002G153700 Sobic002G071500--Sobic002G153700 Sobic010G069100 Sobic010G069100 Sobic002G071500--Sobic010G069100 Sobic003G119000 Sobic003G119000 Sobic002G071500--Sobic003G119000 Sobic010G201500 Sobic010G201500 Sobic002G071500--Sobic010G201500
Octagon: transcription factors


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