Gene annotation
Transcriptome id Sobic.001G433800.2,Sobic.001G433800.1
Synonym TPR1, Sb01g040800
Functional annotation lissencephaly type-1-like homology motif, putative, expressed
UniProt C5WQV2
Pfam PF00400
Panther DB PTHR22847 PTHR22847:SF480
NCBI CDD KOG0266; WD40 repeat-containing protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G80490 : TOPLESS-related 1
RAP-DB (Rice) LOC_Os03g14980.1 : lissencephaly type-1-like homology motif, putative, expressed
MaizeGDB (Corn) Zm00025a052849 , Zm00025a001623 , Zm00025a056398
Brachypodium KQJ95284 , KQK22521
Barley HORVU0Hr1G008690.16 , HORVU0Hr1G008690.15 , HORVU0Hr1G008690.14 , HORVU0Hr1G008690.13 , HORVU0Hr1G008690.12 , HORVU0Hr1G008690.11 , HORVU0Hr1G008690.10 , HORVU0Hr1G008690.1 , HORVU7Hr1G066930.11 , HORVU7Hr1G066930.10 , HORVU0Hr1G008690.9 , HORVU7Hr1G066930.5 , HORVU7Hr1G066930.4 , HORVU7Hr1G066930.7 , HORVU7Hr1G066930.6 , HORVU7Hr1G066930.1 , HORVU7Hr1G066930.3 , HORVU7Hr1G066930.2 , HORVU7Hr1G066930.9 , HORVU7Hr1G066930.8 , HORVU0Hr1G008690.7 , HORVU0Hr1G008690.6 , HORVU0Hr1G008690.5 , HORVU0Hr1G008690.4 , HORVU0Hr1G008690.3 , HORVU0Hr1G008690.2 , HORVU0Hr1G008690.8
Wheat TraesCS7B02G189300 , TraesCS7B02G189300 , TraesCS7B02G189300 , TraesCS7B02G189300 , TraesCS7B02G189300 , TraesCS7B02G189300 , TraesCS7B02G189300 , TraesCS4D02G221200 , TraesCS4D02G221200 , TraesCS4D02G221200 , TraesCS7A02G296100 , TraesCS7A02G296100 , TraesCS7A02G296100 , TraesCS7A02G296100 , TraesCS7A02G296100 , TraesCS7A02G296100 , TraesCS7A02G296100 , TraesCS4A02G083300 , TraesCS4A02G083300 , TraesCS4A02G083300 , TraesCS4B02G220900 , TraesCS4B02G220900 , TraesCS4B02G220900 , TraesCS4B02G220900 , TraesCS4A02G083300 , TraesCS4A02G083300 , TraesCS4A02G083300 , TraesCS4A02G083300 , TraesCS7D02G293500 , TraesCS7D02G293500 , TraesCS7D02G293500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G433800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
2 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
3 Sobic.007G063000 expressed protein -
4 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
5 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
6 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
7 Sobic.001G363500 DIRP family protein, putative, expressed -
8 Sobic.006G252900 ubiquitin family protein, putative, expressed -
9 Sobic.006G041600 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
10 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
11 Sobic.010G123600 WW domain containing protein, expressed -
12 Sobic.004G048800 - K12599: SKI2, antiviral helicase SKI2
13 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
14 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus
15 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
16 Sobic.005G167700 protein phosphatase 2C, putative, expressed -
17 Sobic.009G084900 expressed protein -
18 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
19 Sobic.010G010700 PHD-finger family protein, expressed -
20 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR


Gene co-expression network
sample Sobic001G433800 Sobic001G433800 Sobic010G112100 Sobic010G112100 Sobic001G433800--Sobic010G112100 Sobic003G360400 Sobic003G360400 Sobic001G433800--Sobic003G360400 Sobic007G063000 Sobic007G063000 Sobic001G433800--Sobic007G063000 Sobic005G112300 Sobic005G112300 Sobic001G433800--Sobic005G112300 Sobic004G242400 Sobic004G242400 Sobic001G433800--Sobic004G242400 Sobic002G133300 Sobic002G133300 Sobic001G433800--Sobic002G133300 Sobic001G363500 Sobic001G363500 Sobic001G433800--Sobic001G363500 Sobic006G252900 Sobic006G252900 Sobic001G433800--Sobic006G252900 Sobic006G041600 Sobic006G041600 Sobic001G433800--Sobic006G041600 Sobic010G112100--Sobic003G360400 Sobic010G112100--Sobic005G112300 Sobic009G256300 Sobic009G256300 Sobic010G112100--Sobic009G256300 Sobic003G408600 Sobic003G408600 Sobic010G112100--Sobic003G408600 Sobic010G112100--Sobic001G433800 Sobic001G540400 Sobic001G540400 Sobic010G112100--Sobic001G540400 Sobic007G062800 Sobic007G062800 Sobic010G112100--Sobic007G062800 Sobic010G112100--Sobic004G242400 Sobic003G389200 Sobic003G389200 Sobic010G112100--Sobic003G389200 Sobic003G360400--Sobic010G112100 Sobic002G154000 Sobic002G154000 Sobic003G360400--Sobic002G154000 Sobic001G354600 Sobic001G354600 Sobic003G360400--Sobic001G354600 Sobic003G360400--Sobic001G433800 Sobic003G360400--Sobic003G389200 Sobic009G044800 Sobic009G044800 Sobic003G360400--Sobic009G044800 Sobic003G360400--Sobic005G112300 Sobic003G360400--Sobic007G063000 Sobic003G360400--Sobic009G256300 Sobic007G063000--Sobic001G433800 Sobic003G196300 Sobic003G196300 Sobic007G063000--Sobic003G196300 Sobic007G063000--Sobic003G360400 Sobic009G109200 Sobic009G109200 Sobic007G063000--Sobic009G109200 Sobic009G165700 Sobic009G165700 Sobic007G063000--Sobic009G165700 Sobic007G063000--Sobic010G112100 Sobic003G166750 Sobic003G166750 Sobic007G063000--Sobic003G166750 Sobic007G063000--Sobic004G242400 Sobic007G063000--Sobic009G256300 Sobic005G112300--Sobic001G363500 Sobic005G112300--Sobic007G062800 Sobic005G112300--Sobic010G112100 Sobic010G139000 Sobic010G139000 Sobic005G112300--Sobic010G139000 Sobic007G105100 Sobic007G105100 Sobic005G112300--Sobic007G105100 Sobic005G112300--Sobic001G540400 Sobic010G010700 Sobic010G010700 Sobic005G112300--Sobic010G010700 Sobic005G008800 Sobic005G008800 Sobic005G112300--Sobic005G008800 Sobic002G071500 Sobic002G071500 Sobic005G112300--Sobic002G071500 Sobic004G242400--Sobic007G062800 Sobic004G242400--Sobic009G109200 Sobic010G105200 Sobic010G105200 Sobic004G242400--Sobic010G105200 Sobic004G276400 Sobic004G276400 Sobic004G242400--Sobic004G276400 Sobic004G242400--Sobic010G010700 Sobic004G242400--Sobic010G112100 Sobic004G314000 Sobic004G314000 Sobic004G242400--Sobic004G314000 Sobic004G242400--Sobic009G256300 Sobic004G242400--Sobic001G433800 Sobic002G133300--Sobic004G276400 Sobic002G133300--Sobic001G433800 Sobic001G004400 Sobic001G004400 Sobic002G133300--Sobic001G004400 Sobic001G289800 Sobic001G289800 Sobic002G133300--Sobic001G289800 Sobic003G072200 Sobic003G072200 Sobic002G133300--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic002G133300--Sobic002G397500 Sobic004G131300 Sobic004G131300 Sobic002G133300--Sobic004G131300 Sobic001G194200 Sobic001G194200 Sobic002G133300--Sobic001G194200 Sobic001G493700 Sobic001G493700 Sobic002G133300--Sobic001G493700 Sobic001G363500--Sobic005G112300 Sobic001G363500--Sobic007G062800 Sobic010G247800 Sobic010G247800 Sobic001G363500--Sobic010G247800 Sobic002G299700 Sobic002G299700 Sobic001G363500--Sobic002G299700 Sobic001G363500--Sobic010G112100 Sobic001G363500--Sobic004G242400 Sobic001G363500--Sobic001G433800 Sobic010G279450 Sobic010G279450 Sobic001G363500--Sobic010G279450 Sobic001G363500--Sobic010G139000 Sobic006G252900--Sobic001G433800 Sobic006G252900--Sobic006G041600 Sobic006G252900--Sobic001G363500 Sobic001G441400 Sobic001G441400 Sobic006G252900--Sobic001G441400 Sobic009G256400 Sobic009G256400 Sobic006G252900--Sobic009G256400 Sobic006G096900 Sobic006G096900 Sobic006G252900--Sobic006G096900 Sobic006G252900--Sobic005G112300 Sobic005G027400 Sobic005G027400 Sobic006G252900--Sobic005G027400 Sobic009G177500 Sobic009G177500 Sobic006G252900--Sobic009G177500 Sobic006G041600--Sobic001G194200 Sobic006G041600--Sobic001G433800 Sobic004G291900 Sobic004G291900 Sobic006G041600--Sobic004G291900 Sobic006G041600--Sobic006G252900 Sobic001G002000 Sobic001G002000 Sobic006G041600--Sobic001G002000 Sobic006G041600--Sobic001G289800 Sobic006G041600--Sobic002G133300 Sobic004G185800 Sobic004G185800 Sobic006G041600--Sobic004G185800 Sobic001G207000 Sobic001G207000 Sobic006G041600--Sobic001G207000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.