Gene annotation
Transcriptome id Sobic.004G048800.1
Synonym Sb04g004160
Functional annotation -
UniProt A0A194YMR2
Pfam PF00271 PF00270 PF13234 PF08148
Panther DB -
NCBI CDD -
KEGG Orthology K12599; SKI2, antiviral helicase SKI2
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G46960 : RNA helicase, ATP-dependent, SK12/DOB1 protein
RAP-DB (Rice) LOC_Os02g06500.1 : DSHCT domain containing protein, expressed
MaizeGDB (Corn) Zm00025a019029
Brachypodium PNT65927 , KQJ93428 , KQJ93427
Barley HORVU6Hr1G025670.2 , HORVU6Hr1G025670.7 , HORVU6Hr1G025670.5 , HORVU6Hr1G025670.8 , HORVU6Hr1G025670.9 , HORVU6Hr1G025670.6 , HORVU6Hr1G025670.4 , HORVU6Hr1G025670.3 , HORVU6Hr1G025670.1 , HORVU6Hr1G025670.10 , HORVU6Hr1G025670.11 , HORVU6Hr1G025670.12 , HORVU6Hr1G025670.13 , HORVU6Hr1G025670.14 , HORVU6Hr1G025670.15 , HORVU6Hr1G025670.16 , HORVU6Hr1G025670.17
Wheat TraesCS6B02G161800 , TraesCS6B02G161800 , TraesCS6B02G161800 , TraesCS6B02G161800 , TraesCS6A02G133400 , TraesCS6A02G133400 , TraesCS6A02G133400 , TraesCS6A02G133400 , TraesCS6A02G133400 , TraesCS6A02G133400 , TraesCS6B02G161800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G098300 ubiquitin carboxyl-terminal hydrolase 26, putative, expressed K11858: ubiquitin carboxyl-terminal hydrolase 48
2 Sobic.001G398800 FHA domain containing protein, putative, expressed -
3 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
4 Sobic.010G001100 chromo domain containing protein, expressed -
5 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
6 Sobic.001G363500 DIRP family protein, putative, expressed -
7 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
8 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
9 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
10 Sobic.006G039800 ATP-binding region, ATPase-like domain containing protein, expressed -
11 Sobic.002G299700 ATGRIP/GRIP, putative, expressed -
12 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus
13 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
14 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
15 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
16 Sobic.002G154000 EDM2, putative, expressed -
17 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
18 Sobic.007G062800 SET domain containing protein, expressed -
19 Sobic.009G119000 tetratricopeptide repeat containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
20 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2


Gene co-expression network
sample Sobic004G048800 Sobic004G048800 Sobic008G098300 Sobic008G098300 Sobic004G048800--Sobic008G098300 Sobic001G398800 Sobic001G398800 Sobic004G048800--Sobic001G398800 Sobic004G242400 Sobic004G242400 Sobic004G048800--Sobic004G242400 Sobic010G001100 Sobic010G001100 Sobic004G048800--Sobic010G001100 Sobic003G360400 Sobic003G360400 Sobic004G048800--Sobic003G360400 Sobic001G363500 Sobic001G363500 Sobic004G048800--Sobic001G363500 Sobic002G317200 Sobic002G317200 Sobic004G048800--Sobic002G317200 Sobic001G433800 Sobic001G433800 Sobic004G048800--Sobic001G433800 Sobic005G112300 Sobic005G112300 Sobic004G048800--Sobic005G112300 Sobic008G098300--Sobic004G048800 Sobic008G098300--Sobic001G363500 Sobic008G098300--Sobic010G001100 Sobic008G098300--Sobic001G433800 Sobic003G072200 Sobic003G072200 Sobic008G098300--Sobic003G072200 Sobic007G062800 Sobic007G062800 Sobic008G098300--Sobic007G062800 Sobic008G098300--Sobic005G112300 Sobic006G040500 Sobic006G040500 Sobic008G098300--Sobic006G040500 Sobic008G098300--Sobic003G360400 Sobic001G398800--Sobic004G048800 Sobic001G026200 Sobic001G026200 Sobic001G398800--Sobic001G026200 Sobic001G398800--Sobic003G360400 Sobic001G134300 Sobic001G134300 Sobic001G398800--Sobic001G134300 Sobic002G071500 Sobic002G071500 Sobic001G398800--Sobic002G071500 Sobic001G398800--Sobic010G001100 Sobic007G090430 Sobic007G090430 Sobic001G398800--Sobic007G090430 Sobic010G065300 Sobic010G065300 Sobic001G398800--Sobic010G065300 Sobic004G039200 Sobic004G039200 Sobic001G398800--Sobic004G039200 Sobic004G242400--Sobic007G062800 Sobic009G109200 Sobic009G109200 Sobic004G242400--Sobic009G109200 Sobic010G105200 Sobic010G105200 Sobic004G242400--Sobic010G105200 Sobic004G276400 Sobic004G276400 Sobic004G242400--Sobic004G276400 Sobic010G010700 Sobic010G010700 Sobic004G242400--Sobic010G010700 Sobic010G112100 Sobic010G112100 Sobic004G242400--Sobic010G112100 Sobic004G314000 Sobic004G314000 Sobic004G242400--Sobic004G314000 Sobic009G256300 Sobic009G256300 Sobic004G242400--Sobic009G256300 Sobic004G242400--Sobic001G433800 Sobic010G001100--Sobic010G065300 Sobic010G001100--Sobic004G048800 Sobic002G396500 Sobic002G396500 Sobic010G001100--Sobic002G396500 Sobic003G293200 Sobic003G293200 Sobic010G001100--Sobic003G293200 Sobic010G001100--Sobic004G242400 Sobic010G001100--Sobic009G109200 Sobic002G154000 Sobic002G154000 Sobic010G001100--Sobic002G154000 Sobic001G352900 Sobic001G352900 Sobic010G001100--Sobic001G352900 Sobic010G001100--Sobic009G256300 Sobic003G360400--Sobic010G112100 Sobic003G360400--Sobic002G154000 Sobic001G354600 Sobic001G354600 Sobic003G360400--Sobic001G354600 Sobic003G360400--Sobic001G433800 Sobic003G389200 Sobic003G389200 Sobic003G360400--Sobic003G389200 Sobic009G044800 Sobic009G044800 Sobic003G360400--Sobic009G044800 Sobic003G360400--Sobic005G112300 Sobic007G063000 Sobic007G063000 Sobic003G360400--Sobic007G063000 Sobic003G360400--Sobic009G256300 Sobic001G363500--Sobic005G112300 Sobic001G363500--Sobic007G062800 Sobic010G247800 Sobic010G247800 Sobic001G363500--Sobic010G247800 Sobic002G299700 Sobic002G299700 Sobic001G363500--Sobic002G299700 Sobic001G363500--Sobic010G112100 Sobic001G363500--Sobic004G242400 Sobic001G363500--Sobic001G433800 Sobic010G279450 Sobic010G279450 Sobic001G363500--Sobic010G279450 Sobic010G139000 Sobic010G139000 Sobic001G363500--Sobic010G139000 Sobic002G317200--Sobic004G048800 Sobic001G219600 Sobic001G219600 Sobic002G317200--Sobic001G219600 Sobic002G317200--Sobic004G314000 Sobic002G317200--Sobic001G433800 Sobic003G095900 Sobic003G095900 Sobic002G317200--Sobic003G095900 Sobic002G317200--Sobic004G242400 Sobic002G397500 Sobic002G397500 Sobic002G317200--Sobic002G397500 Sobic002G317200--Sobic005G112300 Sobic009G260500 Sobic009G260500 Sobic002G317200--Sobic009G260500 Sobic001G433800--Sobic010G112100 Sobic001G433800--Sobic003G360400 Sobic001G433800--Sobic007G063000 Sobic001G433800--Sobic005G112300 Sobic001G433800--Sobic004G242400 Sobic002G133300 Sobic002G133300 Sobic001G433800--Sobic002G133300 Sobic001G433800--Sobic001G363500 Sobic006G252900 Sobic006G252900 Sobic001G433800--Sobic006G252900 Sobic006G041600 Sobic006G041600 Sobic001G433800--Sobic006G041600 Sobic005G112300--Sobic001G363500 Sobic005G112300--Sobic007G062800 Sobic005G112300--Sobic010G112100 Sobic005G112300--Sobic010G139000 Sobic007G105100 Sobic007G105100 Sobic005G112300--Sobic007G105100 Sobic001G540400 Sobic001G540400 Sobic005G112300--Sobic001G540400 Sobic005G112300--Sobic010G010700 Sobic005G008800 Sobic005G008800 Sobic005G112300--Sobic005G008800 Sobic005G112300--Sobic002G071500
Octagon: transcription factors


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