Gene annotation
Transcriptome id Sobic.006G039800.1
Synonym Sb06g007940
Functional annotation ATP-binding region, ATPase-like domain containing protein, expressed
UniProt C5YDT7
Pfam PF13589
Panther DB PTHR23336 PTHR23336:SF7
NCBI CDD KOG1845; MORC family ATPases
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G24970 : Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
RAP-DB (Rice) LOC_Os04g24550.1 : ATP-binding region, ATPase-like domain containing protein, expressed
MaizeGDB (Corn) Zm00025a011946
Brachypodium KQJ82002
Barley HORVU2Hr1G066650.11 , HORVU2Hr1G066650.10 , HORVU2Hr1G066650.13 , HORVU2Hr1G066650.12 , HORVU2Hr1G066650.15 , HORVU2Hr1G066650.14 , HORVU2Hr1G066650.16 , HORVU2Hr1G066650.9 , HORVU2Hr1G066650.8 , HORVU2Hr1G066650.5 , HORVU2Hr1G066650.7 , HORVU2Hr1G066650.6 , HORVU2Hr1G066650.1 , HORVU2Hr1G066650.2
Wheat TraesCS2D02G272300 , TraesCS2B02G291200 , TraesCS2B02G291200 , TraesCS2D02G272300 , TraesCS2D02G272300 , TraesCS2A02G273000 , TraesCS2A02G273000
Populus -


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cDNA sequences
Sobic.006G039800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G048800 - K12599: SKI2, antiviral helicase SKI2
2 Sobic.002G154000 EDM2, putative, expressed -
3 Sobic.003G101500 dnaJ domain containing protein, expressed -
4 Sobic.007G090430 - -
5 Sobic.006G210000 zinc finger domain, LSD1 subclass family protein, expressed -
6 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
7 Sobic.010G001100 chromo domain containing protein, expressed -
8 Sobic.004G049700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
9 Sobic.001G398800 FHA domain containing protein, putative, expressed -
10 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
11 Sobic.002G063900 zinc ion binding protein, putative, expressed -
12 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
13 Sobic.003G293200 plus-3 domain containing protein, expressed -
14 Sobic.005G167700 protein phosphatase 2C, putative, expressed -
15 Sobic.004G158400 AML1, putative, expressed -
16 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
17 Sobic.009G260500 tetratricopeptide repeat containing protein, putative, expressed K14408: CSTF3, cleavage stimulation factor subunit 3
18 Sobic.008G113100 protein binding protein, putative, expressed -
19 Sobic.003G012100 smr domain containing protein, expressed -
20 Sobic.001G363500 DIRP family protein, putative, expressed -


Gene co-expression network
sample Sobic006G039800 Sobic006G039800 Sobic004G048800 Sobic004G048800 Sobic006G039800--Sobic004G048800 Sobic002G154000 Sobic002G154000 Sobic006G039800--Sobic002G154000 Sobic003G101500 Sobic003G101500 Sobic006G039800--Sobic003G101500 Sobic007G090430 Sobic007G090430 Sobic006G039800--Sobic007G090430 Sobic006G210000 Sobic006G210000 Sobic006G039800--Sobic006G210000 Sobic009G040600 Sobic009G040600 Sobic006G039800--Sobic009G040600 Sobic010G001100 Sobic010G001100 Sobic006G039800--Sobic010G001100 Sobic004G049700 Sobic004G049700 Sobic006G039800--Sobic004G049700 Sobic001G398800 Sobic001G398800 Sobic006G039800--Sobic001G398800 Sobic008G098300 Sobic008G098300 Sobic004G048800--Sobic008G098300 Sobic004G048800--Sobic001G398800 Sobic004G242400 Sobic004G242400 Sobic004G048800--Sobic004G242400 Sobic004G048800--Sobic010G001100 Sobic003G360400 Sobic003G360400 Sobic004G048800--Sobic003G360400 Sobic001G363500 Sobic001G363500 Sobic004G048800--Sobic001G363500 Sobic002G317200 Sobic002G317200 Sobic004G048800--Sobic002G317200 Sobic001G433800 Sobic001G433800 Sobic004G048800--Sobic001G433800 Sobic005G112300 Sobic005G112300 Sobic004G048800--Sobic005G112300 Sobic002G154000--Sobic003G360400 Sobic003G416700 Sobic003G416700 Sobic002G154000--Sobic003G416700 Sobic010G112100 Sobic010G112100 Sobic002G154000--Sobic010G112100 Sobic001G063700 Sobic001G063700 Sobic002G154000--Sobic001G063700 Sobic002G154000--Sobic010G001100 Sobic001G461400 Sobic001G461400 Sobic002G154000--Sobic001G461400 Sobic002G154000--Sobic001G433800 Sobic002G154000--Sobic004G048800 Sobic007G063000 Sobic007G063000 Sobic002G154000--Sobic007G063000 Sobic004G039200 Sobic004G039200 Sobic003G101500--Sobic004G039200 Sobic004G258700 Sobic004G258700 Sobic003G101500--Sobic004G258700 Sobic007G161000 Sobic007G161000 Sobic003G101500--Sobic007G161000 Sobic009G260500 Sobic009G260500 Sobic003G101500--Sobic009G260500 Sobic007G054400 Sobic007G054400 Sobic003G101500--Sobic007G054400 Sobic001G456900 Sobic001G456900 Sobic003G101500--Sobic001G456900 Sobic008G113100 Sobic008G113100 Sobic003G101500--Sobic008G113100 Sobic008G028700 Sobic008G028700 Sobic003G101500--Sobic008G028700 Sobic009G024000 Sobic009G024000 Sobic003G101500--Sobic009G024000 Sobic008G173100 Sobic008G173100 Sobic007G090430--Sobic008G173100 Sobic009G177500 Sobic009G177500 Sobic007G090430--Sobic009G177500 Sobic001G384300 Sobic001G384300 Sobic007G090430--Sobic001G384300 Sobic007G090430--Sobic009G260500 Sobic002G063900 Sobic002G063900 Sobic007G090430--Sobic002G063900 Sobic007G090430--Sobic001G398800 Sobic007G090430--Sobic004G048800 Sobic005G207500 Sobic005G207500 Sobic007G090430--Sobic005G207500 Sobic007G090430--Sobic002G317200 Sobic006G210000--Sobic010G001100 Sobic003G293200 Sobic003G293200 Sobic006G210000--Sobic003G293200 Sobic004G156500 Sobic004G156500 Sobic006G210000--Sobic004G156500 Sobic010G065300 Sobic010G065300 Sobic006G210000--Sobic010G065300 Sobic004G355800 Sobic004G355800 Sobic006G210000--Sobic004G355800 Sobic007G031600 Sobic007G031600 Sobic006G210000--Sobic007G031600 Sobic008G100100 Sobic008G100100 Sobic006G210000--Sobic008G100100 Sobic006G052300 Sobic006G052300 Sobic006G210000--Sobic006G052300 Sobic005G191900 Sobic005G191900 Sobic006G210000--Sobic005G191900 Sobic004G009600 Sobic004G009600 Sobic009G040600--Sobic004G009600 Sobic002G006900 Sobic002G006900 Sobic009G040600--Sobic002G006900 Sobic008G047800 Sobic008G047800 Sobic009G040600--Sobic008G047800 Sobic004G208900 Sobic004G208900 Sobic009G040600--Sobic004G208900 Sobic009G040600--Sobic005G112300 Sobic007G065400 Sobic007G065400 Sobic009G040600--Sobic007G065400 Sobic009G040600--Sobic008G028700 Sobic002G309600 Sobic002G309600 Sobic009G040600--Sobic002G309600 Sobic009G126400 Sobic009G126400 Sobic009G040600--Sobic009G126400 Sobic010G001100--Sobic010G065300 Sobic010G001100--Sobic004G048800 Sobic002G396500 Sobic002G396500 Sobic010G001100--Sobic002G396500 Sobic010G001100--Sobic003G293200 Sobic010G001100--Sobic004G242400 Sobic009G109200 Sobic009G109200 Sobic010G001100--Sobic009G109200 Sobic010G001100--Sobic002G154000 Sobic001G352900 Sobic001G352900 Sobic010G001100--Sobic001G352900 Sobic009G256300 Sobic009G256300 Sobic010G001100--Sobic009G256300 Sobic001G424600 Sobic001G424600 Sobic004G049700--Sobic001G424600 Sobic004G049700--Sobic002G063900 Sobic002G148400 Sobic002G148400 Sobic004G049700--Sobic002G148400 Sobic004G049700--Sobic006G039800 Sobic004G049700--Sobic002G154000 Sobic006G161000 Sobic006G161000 Sobic004G049700--Sobic006G161000 Sobic001G346900 Sobic001G346900 Sobic004G049700--Sobic001G346900 Sobic004G049700--Sobic001G461400 Sobic007G004000 Sobic007G004000 Sobic004G049700--Sobic007G004000 Sobic001G398800--Sobic004G048800 Sobic001G026200 Sobic001G026200 Sobic001G398800--Sobic001G026200 Sobic001G398800--Sobic003G360400 Sobic001G134300 Sobic001G134300 Sobic001G398800--Sobic001G134300 Sobic002G071500 Sobic002G071500 Sobic001G398800--Sobic002G071500 Sobic001G398800--Sobic010G001100 Sobic001G398800--Sobic007G090430 Sobic001G398800--Sobic010G065300 Sobic001G398800--Sobic004G039200
Octagon: transcription factors


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