Gene annotation
Transcriptome id Sobic.004G049700.1
Synonym
Functional annotation zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
UniProt A0A194YMV6
Pfam PF00642
Panther DB PTHR38160 PTHR38160:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G21810 : Zinc finger C-x8-C-x5-C-x3-H type family protein
RAP-DB (Rice) LOC_Os02g06584.2 : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MaizeGDB (Corn) Zm00025a034848 , Zm00025a018147
Brachypodium KQJ93449 , KQK17196 , KQJ93454 , KQJ93452 , KQJ93451 , KQJ93450 , KQJ93453
Barley HORVU6Hr1G025980.10 , HORVU6Hr1G025980.11 , HORVU6Hr1G025980.8 , HORVU6Hr1G025980.9 , HORVU6Hr1G025980.4 , HORVU6Hr1G025980.5 , HORVU6Hr1G025980.6 , HORVU6Hr1G025980.7 , HORVU6Hr1G025980.1 , HORVU6Hr1G025980.2 , HORVU6Hr1G025980.3
Wheat TraesCS6D02G124400 , TraesCS6B02G163300 , TraesCS6B02G163300 , TraesCS6A02G135300
Populus -


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cDNA sequences
Sobic.004G049700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G424600 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
2 Sobic.002G063900 zinc ion binding protein, putative, expressed -
3 Sobic.002G148400 histone-lysine N-methyltransferase, H3 lysine-4 specific ATX1, putative, expressed -
4 Sobic.006G039800 ATP-binding region, ATPase-like domain containing protein, expressed -
5 Sobic.002G154000 EDM2, putative, expressed -
6 Sobic.006G161000 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2
7 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
8 Sobic.001G461400 pre-mRNA-processing factor 39, putative, expressed K13217: PRPF39, pre-mRNA-processing factor 39
9 Sobic.007G004000 YL1 nuclear protein C-terminal domain containing protein, expressed K11664: VPS72, TCFL1, vacuolar protein sorting-associated protein 72
10 Sobic.001G134300 - K17613: calcineurin-binding protein cabin-1
11 Sobic.006G116100 RNA recognition motif containing protein, putative, expressed -
12 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
13 Sobic.002G278000 endonuclease/exonuclease/phosphatase family protein, putative, expressed K10772: AP endonuclease 2
14 Sobic.010G077500 protein of unknown function DUF1296 domain containing protein, expressed -
15 Sobic.004G048800 - K12599: SKI2, antiviral helicase SKI2
16 Sobic.003G416700 homeobox domain containing protein, expressed -
17 Sobic.004G355800 expressed protein -
18 Sobic.005G200800 homeobox domain containing protein, expressed -
19 Sobic.004G156500 expressed protein -
20 Sobic.004G129300 chromatin modification-related protein EAF3, putative, expressed K11339: MORF4L1, MRG15, mortality factor 4-like protein 1


Gene co-expression network
sample Sobic004G049700 Sobic004G049700 Sobic001G424600 Sobic001G424600 Sobic004G049700--Sobic001G424600 Sobic002G063900 Sobic002G063900 Sobic004G049700--Sobic002G063900 Sobic002G148400 Sobic002G148400 Sobic004G049700--Sobic002G148400 Sobic006G039800 Sobic006G039800 Sobic004G049700--Sobic006G039800 Sobic002G154000 Sobic002G154000 Sobic004G049700--Sobic002G154000 Sobic006G161000 Sobic006G161000 Sobic004G049700--Sobic006G161000 Sobic001G346900 Sobic001G346900 Sobic004G049700--Sobic001G346900 Sobic001G461400 Sobic001G461400 Sobic004G049700--Sobic001G461400 Sobic007G004000 Sobic007G004000 Sobic004G049700--Sobic007G004000 Sobic001G424600--Sobic004G049700 Sobic009G151200 Sobic009G151200 Sobic001G424600--Sobic009G151200 Sobic001G424600--Sobic002G063900 Sobic006G116100 Sobic006G116100 Sobic001G424600--Sobic006G116100 Sobic002G423200 Sobic002G423200 Sobic001G424600--Sobic002G423200 Sobic002G278000 Sobic002G278000 Sobic001G424600--Sobic002G278000 Sobic003G160000 Sobic003G160000 Sobic001G424600--Sobic003G160000 Sobic008G058800 Sobic008G058800 Sobic001G424600--Sobic008G058800 Sobic002G357700 Sobic002G357700 Sobic001G424600--Sobic002G357700 Sobic008G173100 Sobic008G173100 Sobic002G063900--Sobic008G173100 Sobic002G063900--Sobic006G116100 Sobic004G357100 Sobic004G357100 Sobic002G063900--Sobic004G357100 Sobic002G260400 Sobic002G260400 Sobic002G063900--Sobic002G260400 Sobic007G090430 Sobic007G090430 Sobic002G063900--Sobic007G090430 Sobic004G246100 Sobic004G246100 Sobic002G063900--Sobic004G246100 Sobic002G063900--Sobic002G278000 Sobic008G149800 Sobic008G149800 Sobic002G063900--Sobic008G149800 SobicK028600 SobicK028600 Sobic002G063900--SobicK028600 Sobic002G148400--Sobic004G049700 Sobic009G129600 Sobic009G129600 Sobic002G148400--Sobic009G129600 Sobic008G057000 Sobic008G057000 Sobic002G148400--Sobic008G057000 Sobic001G484200 Sobic001G484200 Sobic002G148400--Sobic001G484200 Sobic001G134300 Sobic001G134300 Sobic002G148400--Sobic001G134300 Sobic004G156500 Sobic004G156500 Sobic002G148400--Sobic004G156500 Sobic002G357100 Sobic002G357100 Sobic002G148400--Sobic002G357100 Sobic004G086200 Sobic004G086200 Sobic002G148400--Sobic004G086200 Sobic001G346700 Sobic001G346700 Sobic002G148400--Sobic001G346700 Sobic004G048800 Sobic004G048800 Sobic006G039800--Sobic004G048800 Sobic006G039800--Sobic002G154000 Sobic003G101500 Sobic003G101500 Sobic006G039800--Sobic003G101500 Sobic006G039800--Sobic007G090430 Sobic006G210000 Sobic006G210000 Sobic006G039800--Sobic006G210000 Sobic009G040600 Sobic009G040600 Sobic006G039800--Sobic009G040600 Sobic010G001100 Sobic010G001100 Sobic006G039800--Sobic010G001100 Sobic006G039800--Sobic004G049700 Sobic001G398800 Sobic001G398800 Sobic006G039800--Sobic001G398800 Sobic003G360400 Sobic003G360400 Sobic002G154000--Sobic003G360400 Sobic003G416700 Sobic003G416700 Sobic002G154000--Sobic003G416700 Sobic010G112100 Sobic010G112100 Sobic002G154000--Sobic010G112100 Sobic001G063700 Sobic001G063700 Sobic002G154000--Sobic001G063700 Sobic002G154000--Sobic010G001100 Sobic002G154000--Sobic001G461400 Sobic001G433800 Sobic001G433800 Sobic002G154000--Sobic001G433800 Sobic002G154000--Sobic004G048800 Sobic007G063000 Sobic007G063000 Sobic002G154000--Sobic007G063000 Sobic003G038100 Sobic003G038100 Sobic006G161000--Sobic003G038100 Sobic006G161000--Sobic004G049700 Sobic001G405300 Sobic001G405300 Sobic006G161000--Sobic001G405300 Sobic006G186400 Sobic006G186400 Sobic006G161000--Sobic006G186400 Sobic010G077500 Sobic010G077500 Sobic006G161000--Sobic010G077500 Sobic007G026000 Sobic007G026000 Sobic006G161000--Sobic007G026000 Sobic003G114500 Sobic003G114500 Sobic006G161000--Sobic003G114500 Sobic004G180900 Sobic004G180900 Sobic006G161000--Sobic004G180900 Sobic007G146900 Sobic007G146900 Sobic006G161000--Sobic007G146900 Sobic001G346900--Sobic004G086200 Sobic003G409200 Sobic003G409200 Sobic001G346900--Sobic003G409200 Sobic001G346900--Sobic001G134300 Sobic003G042400 Sobic003G042400 Sobic001G346900--Sobic003G042400 Sobic008G147200 Sobic008G147200 Sobic001G346900--Sobic008G147200 Sobic004G285000 Sobic004G285000 Sobic001G346900--Sobic004G285000 Sobic001G346900--Sobic003G416700 Sobic010G096000 Sobic010G096000 Sobic001G346900--Sobic010G096000 Sobic002G422100 Sobic002G422100 Sobic001G346900--Sobic002G422100 Sobic001G461400--Sobic001G063700 Sobic001G461400--Sobic003G416700 Sobic002G264200 Sobic002G264200 Sobic001G461400--Sobic002G264200 Sobic001G461400--Sobic002G154000 Sobic001G087600 Sobic001G087600 Sobic001G461400--Sobic001G087600 Sobic005G200800 Sobic005G200800 Sobic001G461400--Sobic005G200800 Sobic001G461400--Sobic003G360400 Sobic002G071500 Sobic002G071500 Sobic001G461400--Sobic002G071500 Sobic001G461400--Sobic010G112100 Sobic007G004000--Sobic004G049700 Sobic002G127100 Sobic002G127100 Sobic007G004000--Sobic002G127100 Sobic007G004000--Sobic006G161000 Sobic002G388500 Sobic002G388500 Sobic007G004000--Sobic002G388500 Sobic007G009700 Sobic007G009700 Sobic007G004000--Sobic007G009700 Sobic007G168300 Sobic007G168300 Sobic007G004000--Sobic007G168300 Sobic006G251900 Sobic006G251900 Sobic007G004000--Sobic006G251900 Sobic010G130100 Sobic010G130100 Sobic007G004000--Sobic010G130100 Sobic007G004000--Sobic003G114500
Octagon: transcription factors


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