Gene annotation
Transcriptome id Sobic.002G148400.2,Sobic.002G148400.1,Sobic.002G148400.3
Synonym ATX2, SDG30
Functional annotation histone-lysine N-methyltransferase, H3 lysine-4 specific ATX1, putative, expressed
UniProt A0A1W0W3Y4 , A0A1W0W459 , C5X7H8
Pfam PF13831 PF00856 PF05964 PF00855 PF05965 PF13771 PF13831 PF05964 PF00855 PF05965 PF13771
Panther DB PTHR13793 PTHR13793:SF100
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0005634nucleus GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT1G05830 : trithorax-like protein 2
RAP-DB (Rice) LOC_Os09g04890.1 : histone-lysine N-methyltransferase, H3 lysine-4 specific ATX1, putative, expressed
MaizeGDB (Corn) Zm00025a046206
Brachypodium PNT62805 , KQJ86924 , KQJ86923 , KQJ86922
Barley HORVU5Hr1G051100.4 , HORVU5Hr1G051100.5 , HORVU5Hr1G051100.6 , HORVU5Hr1G051100.7 , HORVU5Hr1G051100.1 , HORVU5Hr1G051100.2 , HORVU5Hr1G051100.3 , HORVU5Hr1G051100.8 , HORVU5Hr1G051100.9 , HORVU5Hr1G051100.16 , HORVU5Hr1G051100.17 , HORVU5Hr1G051100.14 , HORVU5Hr1G051100.15 , HORVU5Hr1G051100.12 , HORVU5Hr1G051100.13 , HORVU5Hr1G051100.10 , HORVU5Hr1G051100.11 , HORVU5Hr1G051100.18 , HORVU5Hr1G051100.19 , HORVU5Hr1G051100.28 , HORVU5Hr1G051100.27 , HORVU5Hr1G051100.26 , HORVU5Hr1G051100.25 , HORVU5Hr1G051100.24 , HORVU5Hr1G051100.23 , HORVU5Hr1G051100.22 , HORVU5Hr1G051100.21 , HORVU5Hr1G051100.20
Wheat TraesCS5A02G165200 , TraesCS5B02G163000 , TraesCS5D02G170100 , TraesCS5D02G170100 , TraesCS5D02G170100 , TraesCS5D02G170100 , TraesCS5D02G170100 , TraesCS5D02G170100 , TraesCS5D02G170100
Populus -


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cDNA sequences
Sobic.002G148400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G049700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
2 Sobic.009G129600 ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed -
3 Sobic.008G057000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
4 Sobic.001G484200 "RGA1/D1(Ortholog in rice:Ashikari, 1999)"(PubMedID : 31659848)@G-protein alpha subunit, putative, expressed K04640: guanine nucleotide-binding protein subunit alpha, other
5 Sobic.001G134300 - K17613: calcineurin-binding protein cabin-1
6 Sobic.004G156500 expressed protein -
7 Sobic.002G357100 SUMO-activating enzyme subunit 2, putative, expressed K10685: UBLE1B, SAE2, ubiquitin-like 1-activating enzyme E1 B
8 Sobic.004G086200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
9 Sobic.001G346700 Ser/Thr protein phosphatase family protein, putative, expressed -
10 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
11 Sobic.010G279900 PHD-finger domain containing protein, expressed -
12 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
13 Sobic.010G096000 OsDegp10 - Putative Deg protease homologue, expressed -
14 Sobic.009G151200 expressed protein -
15 Sobic.010G269300 hydrolase, acting on carbon-nitrogen, putative, expressed -
16 Sobic.001G087600 ZOS9-03 - C2H2 zinc finger protein, expressed -
17 Sobic.005G199200 nuclear pore protein 84/107 containing protein, expressed K14301: NUP107, nuclear pore complex protein Nup107
18 Sobic.006G131200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K03018: RPC1, DNA-directed RNA polymerase III subunit RPC1
19 Sobic.001G482200 FAR1 family protein, expressed K17604: zinc finger SWIM domain-containing protein 3
20 Sobic.002G063900 zinc ion binding protein, putative, expressed -


Gene co-expression network
sample Sobic002G148400 Sobic002G148400 Sobic004G049700 Sobic004G049700 Sobic002G148400--Sobic004G049700 Sobic009G129600 Sobic009G129600 Sobic002G148400--Sobic009G129600 Sobic008G057000 Sobic008G057000 Sobic002G148400--Sobic008G057000 Sobic001G484200 Sobic001G484200 Sobic002G148400--Sobic001G484200 Sobic001G134300 Sobic001G134300 Sobic002G148400--Sobic001G134300 Sobic004G156500 Sobic004G156500 Sobic002G148400--Sobic004G156500 Sobic002G357100 Sobic002G357100 Sobic002G148400--Sobic002G357100 Sobic004G086200 Sobic004G086200 Sobic002G148400--Sobic004G086200 Sobic001G346700 Sobic001G346700 Sobic002G148400--Sobic001G346700 Sobic001G424600 Sobic001G424600 Sobic004G049700--Sobic001G424600 Sobic002G063900 Sobic002G063900 Sobic004G049700--Sobic002G063900 Sobic004G049700--Sobic002G148400 Sobic006G039800 Sobic006G039800 Sobic004G049700--Sobic006G039800 Sobic002G154000 Sobic002G154000 Sobic004G049700--Sobic002G154000 Sobic006G161000 Sobic006G161000 Sobic004G049700--Sobic006G161000 Sobic001G346900 Sobic001G346900 Sobic004G049700--Sobic001G346900 Sobic001G461400 Sobic001G461400 Sobic004G049700--Sobic001G461400 Sobic007G004000 Sobic007G004000 Sobic004G049700--Sobic007G004000 Sobic008G058800 Sobic008G058800 Sobic009G129600--Sobic008G058800 Sobic010G077500 Sobic010G077500 Sobic009G129600--Sobic010G077500 Sobic009G129600--Sobic001G346700 Sobic006G248500 Sobic006G248500 Sobic009G129600--Sobic006G248500 Sobic009G040800 Sobic009G040800 Sobic009G129600--Sobic009G040800 Sobic009G129600--Sobic002G063900 Sobic008G100100 Sobic008G100100 Sobic009G129600--Sobic008G100100 Sobic009G129600--Sobic002G357100 Sobic009G129600--Sobic002G148400 Sobic003G409200 Sobic003G409200 Sobic008G057000--Sobic003G409200 Sobic005G200800 Sobic005G200800 Sobic008G057000--Sobic005G200800 Sobic008G057000--Sobic001G346900 Sobic008G057000--Sobic004G086200 Sobic008G057000--Sobic002G148400 Sobic010G279900 Sobic010G279900 Sobic008G057000--Sobic010G279900 Sobic008G057000--Sobic001G484200 Sobic009G032200 Sobic009G032200 Sobic008G057000--Sobic009G032200 Sobic007G183300 Sobic007G183300 Sobic008G057000--Sobic007G183300 Sobic001G484200--Sobic002G148400 Sobic001G484200--Sobic008G057000 Sobic010G233000 Sobic010G233000 Sobic001G484200--Sobic010G233000 Sobic001G373000 Sobic001G373000 Sobic001G484200--Sobic001G373000 Sobic001G484200--Sobic001G346900 Sobic004G043750 Sobic004G043750 Sobic001G484200--Sobic004G043750 Sobic001G484200--Sobic003G409200 Sobic001G013300 Sobic001G013300 Sobic001G484200--Sobic001G013300 Sobic009G235200 Sobic009G235200 Sobic001G484200--Sobic009G235200 Sobic010G065300 Sobic010G065300 Sobic001G134300--Sobic010G065300 Sobic001G306900 Sobic001G306900 Sobic001G134300--Sobic001G306900 Sobic010G001100 Sobic010G001100 Sobic001G134300--Sobic010G001100 Sobic001G134300--Sobic004G156500 Sobic001G134300--Sobic004G086200 Sobic001G398800 Sobic001G398800 Sobic001G134300--Sobic001G398800 Sobic001G090800 Sobic001G090800 Sobic001G134300--Sobic001G090800 Sobic001G134300--Sobic001G346900 Sobic002G153700 Sobic002G153700 Sobic001G134300--Sobic002G153700 Sobic004G156500--Sobic008G100100 Sobic004G156500--Sobic010G065300 Sobic004G156500--Sobic001G134300 Sobic004G156500--Sobic001G306900 Sobic006G118700 Sobic006G118700 Sobic004G156500--Sobic006G118700 Sobic006G210000 Sobic006G210000 Sobic004G156500--Sobic006G210000 Sobic003G416700 Sobic003G416700 Sobic004G156500--Sobic003G416700 Sobic004G156500--Sobic002G357100 Sobic002G259800 Sobic002G259800 Sobic004G156500--Sobic002G259800 Sobic002G357100--Sobic004G156500 Sobic006G067600 Sobic006G067600 Sobic002G357100--Sobic006G067600 Sobic002G357100--Sobic006G210000 Sobic002G357100--Sobic009G129600 Sobic002G357100--Sobic007G183300 Sobic007G091600 Sobic007G091600 Sobic002G357100--Sobic007G091600 Sobic009G151200 Sobic009G151200 Sobic002G357100--Sobic009G151200 Sobic002G357100--Sobic008G100100 Sobic004G129300 Sobic004G129300 Sobic002G357100--Sobic004G129300 Sobic004G086200--Sobic001G346900 Sobic004G285000 Sobic004G285000 Sobic004G086200--Sobic004G285000 Sobic004G086200--Sobic001G134300 Sobic001G245900 Sobic001G245900 Sobic004G086200--Sobic001G245900 Sobic004G086200--Sobic001G306900 Sobic010G096000 Sobic010G096000 Sobic004G086200--Sobic010G096000 Sobic004G086200--Sobic010G279900 Sobic001G246500 Sobic001G246500 Sobic004G086200--Sobic001G246500 Sobic004G086200--Sobic010G065300 Sobic001G346700--Sobic009G129600 Sobic004G347100 Sobic004G347100 Sobic001G346700--Sobic004G347100 Sobic003G415100 Sobic003G415100 Sobic001G346700--Sobic003G415100 Sobic003G354100 Sobic003G354100 Sobic001G346700--Sobic003G354100 Sobic007G188900 Sobic007G188900 Sobic001G346700--Sobic007G188900 Sobic001G346700--Sobic002G148400 Sobic007G139400 Sobic007G139400 Sobic001G346700--Sobic007G139400 Sobic002G268900 Sobic002G268900 Sobic001G346700--Sobic002G268900 Sobic002G334600 Sobic002G334600 Sobic001G346700--Sobic002G334600
Octagon: transcription factors


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