Gene annotation
Transcriptome id Sobic.001G484200.3,Sobic.001G484200.1,Sobic.001G484200.2
Synonym GPA1, GPALPHA1, Sb01g045320, ATGPA1
Functional annotation "RGA1/D1(Ortholog in rice:Ashikari, 1999)" (PubMedID : 31659848)
G-protein alpha subunit, putative, expressed
UniProt A0A1Z5SBK5 , A7UH91 , C5WVT9
Pfam PF00503
Panther DB PTHR10218 PTHR10218:SF224
NCBI CDD KOG0082; G-protein alpha subunit (small G protein superfamily)
KEGG Orthology K04640; guanine nucleotide-binding protein subunit alpha, other
Gene Ontology GO:0007186; G protein-coupled receptor signaling pathway GO:0004871obsolete signal transducer activity GO:0003924GTPase activity


Orthologs (automatic annotation)
TAIR AT2G26300 : G protein alpha subunit 1
RAP-DB (Rice) LOC_Os05g26890.1 : G-protein alpha subunit, putative, expressed
MaizeGDB (Corn) Zm00025a000902
Brachypodium KQK11456
Barley HORVU7Hr1G008720.1 , HORVU7Hr1G008720.2 , HORVU7Hr1G008720.3 , HORVU7Hr1G008720.4 , HORVU7Hr1G008720.5 , HORVU7Hr1G008720.7 , HORVU7Hr1G008720.8 , HORVU7Hr1G008720.12 , HORVU7Hr1G008720.13 , HORVU7Hr1G008720.10 , HORVU7Hr1G008720.11 , HORVU7Hr1G008720.16 , HORVU7Hr1G008720.14 , HORVU7Hr1G008720.15 , HORVU7Hr1G008720.6 , HORVU7Hr1G008720.9
Wheat TraesCS1B02G479100 , TraesCS1B02G479100 , TraesCSU02G146500 , TraesCS7A02G000200 , TraesCS7D02G000100 , TraesCS7D02G000100 , TraesCS7D02G000100 , TraesCS7D02G000100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G148400 histone-lysine N-methyltransferase, H3 lysine-4 specific ATX1, putative, expressed -
2 Sobic.008G057000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
3 Sobic.010G233000 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
4 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
5 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
6 Sobic.004G043750 - K16251: DNA-directed RNA polymerase V subunit 1
7 Sobic.003G409200 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
8 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
9 Sobic.009G235200 ribosomal RNA large subunit methyltransferase J, putative, expressed K14857: SPB1, AdoMet-dependent rRNA methyltransferase SPB1
10 Sobic.001G501800 ZOS1-20 - C2H2 zinc finger protein, expressed -
11 Sobic.006G067600 histone deacetylase, putative, expressed K06067: histone deacetylase 1/2
12 Sobic.002G357100 SUMO-activating enzyme subunit 2, putative, expressed K10685: UBLE1B, SAE2, ubiquitin-like 1-activating enzyme E1 B
13 Sobic.009G122800 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
14 Sobic.005G200800 homeobox domain containing protein, expressed -
15 Sobic.004G129300 chromatin modification-related protein EAF3, putative, expressed K11339: MORF4L1, MRG15, mortality factor 4-like protein 1
16 Sobic.005G199200 nuclear pore protein 84/107 containing protein, expressed K14301: NUP107, nuclear pore complex protein Nup107
17 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -
18 Sobic.005G047300 OsFBT13 - F-box and tubby domain containing protein, expressed -
19 Sobic.004G049700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
20 Sobic.009G113100 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1


Gene co-expression network
sample Sobic001G484200 Sobic001G484200 Sobic002G148400 Sobic002G148400 Sobic001G484200--Sobic002G148400 Sobic008G057000 Sobic008G057000 Sobic001G484200--Sobic008G057000 Sobic010G233000 Sobic010G233000 Sobic001G484200--Sobic010G233000 Sobic001G373000 Sobic001G373000 Sobic001G484200--Sobic001G373000 Sobic001G346900 Sobic001G346900 Sobic001G484200--Sobic001G346900 Sobic004G043750 Sobic004G043750 Sobic001G484200--Sobic004G043750 Sobic003G409200 Sobic003G409200 Sobic001G484200--Sobic003G409200 Sobic001G013300 Sobic001G013300 Sobic001G484200--Sobic001G013300 Sobic009G235200 Sobic009G235200 Sobic001G484200--Sobic009G235200 Sobic004G049700 Sobic004G049700 Sobic002G148400--Sobic004G049700 Sobic009G129600 Sobic009G129600 Sobic002G148400--Sobic009G129600 Sobic002G148400--Sobic008G057000 Sobic002G148400--Sobic001G484200 Sobic001G134300 Sobic001G134300 Sobic002G148400--Sobic001G134300 Sobic004G156500 Sobic004G156500 Sobic002G148400--Sobic004G156500 Sobic002G357100 Sobic002G357100 Sobic002G148400--Sobic002G357100 Sobic004G086200 Sobic004G086200 Sobic002G148400--Sobic004G086200 Sobic001G346700 Sobic001G346700 Sobic002G148400--Sobic001G346700 Sobic008G057000--Sobic003G409200 Sobic005G200800 Sobic005G200800 Sobic008G057000--Sobic005G200800 Sobic008G057000--Sobic001G346900 Sobic008G057000--Sobic004G086200 Sobic008G057000--Sobic002G148400 Sobic010G279900 Sobic010G279900 Sobic008G057000--Sobic010G279900 Sobic008G057000--Sobic001G484200 Sobic009G032200 Sobic009G032200 Sobic008G057000--Sobic009G032200 Sobic007G183300 Sobic007G183300 Sobic008G057000--Sobic007G183300 Sobic010G233000--Sobic009G032200 Sobic004G006600 Sobic004G006600 Sobic010G233000--Sobic004G006600 Sobic010G233000--Sobic004G043750 Sobic010G233000--Sobic001G484200 Sobic004G177600 Sobic004G177600 Sobic010G233000--Sobic004G177600 Sobic010G236200 Sobic010G236200 Sobic010G233000--Sobic010G236200 Sobic010G233000--Sobic008G057000 Sobic010G215900 Sobic010G215900 Sobic010G233000--Sobic010G215900 Sobic003G221500 Sobic003G221500 Sobic010G233000--Sobic003G221500 Sobic009G104900 Sobic009G104900 Sobic001G373000--Sobic009G104900 Sobic004G038100 Sobic004G038100 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic003G259600 Sobic003G259600 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic002G126800 Sobic002G126800 Sobic001G373000--Sobic002G126800 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic001G346900--Sobic004G086200 Sobic001G346900--Sobic003G409200 Sobic001G346900--Sobic001G134300 Sobic003G042400 Sobic003G042400 Sobic001G346900--Sobic003G042400 Sobic008G147200 Sobic008G147200 Sobic001G346900--Sobic008G147200 Sobic004G285000 Sobic004G285000 Sobic001G346900--Sobic004G285000 Sobic003G416700 Sobic003G416700 Sobic001G346900--Sobic003G416700 Sobic010G096000 Sobic010G096000 Sobic001G346900--Sobic010G096000 Sobic002G422100 Sobic002G422100 Sobic001G346900--Sobic002G422100 Sobic009G190200 Sobic009G190200 Sobic004G043750--Sobic009G190200 Sobic006G280100 Sobic006G280100 Sobic004G043750--Sobic006G280100 Sobic009G259900 Sobic009G259900 Sobic004G043750--Sobic009G259900 Sobic004G043750--Sobic010G236200 Sobic001G395200 Sobic001G395200 Sobic004G043750--Sobic001G395200 Sobic004G111000 Sobic004G111000 Sobic004G043750--Sobic004G111000 Sobic010G269300 Sobic010G269300 Sobic004G043750--Sobic010G269300 Sobic007G125700 Sobic007G125700 Sobic004G043750--Sobic007G125700 Sobic004G043750--Sobic010G233000 Sobic003G409200--Sobic001G346900 Sobic003G409200--Sobic010G215900 Sobic003G409200--Sobic004G111000 Sobic003G409200--Sobic008G057000 Sobic003G427100 Sobic003G427100 Sobic003G409200--Sobic003G427100 Sobic001G501800 Sobic001G501800 Sobic003G409200--Sobic001G501800 Sobic003G409200--Sobic004G285000 Sobic003G409200--Sobic010G279900 Sobic002G145800 Sobic002G145800 Sobic003G409200--Sobic002G145800 Sobic001G013300--Sobic004G285000 Sobic001G013300--Sobic001G373000 Sobic001G013300--Sobic008G147200 Sobic001G013300--Sobic001G346900 Sobic001G004100 Sobic001G004100 Sobic001G013300--Sobic001G004100 Sobic001G013300--Sobic010G215900 Sobic001G013300--Sobic003G409200 Sobic007G187600 Sobic007G187600 Sobic001G013300--Sobic007G187600 Sobic001G023800 Sobic001G023800 Sobic001G013300--Sobic001G023800 Sobic008G163500 Sobic008G163500 Sobic009G235200--Sobic008G163500 Sobic006G226300 Sobic006G226300 Sobic009G235200--Sobic006G226300 Sobic002G142600 Sobic002G142600 Sobic009G235200--Sobic002G142600 Sobic009G235200--Sobic003G042400 Sobic007G014800 Sobic007G014800 Sobic009G235200--Sobic007G014800 Sobic002G399200 Sobic002G399200 Sobic009G235200--Sobic002G399200 Sobic001G173800 Sobic001G173800 Sobic009G235200--Sobic001G173800 Sobic005G199200 Sobic005G199200 Sobic009G235200--Sobic005G199200 Sobic002G263700 Sobic002G263700 Sobic009G235200--Sobic002G263700
Octagon: transcription factors


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