Gene annotation
Transcriptome id Sobic.006G067600.1,Sobic.006G067600.3,Sobic.006G067600.2
Synonym HDA9, HDA09, Sb06g015420
Functional annotation histone deacetylase, putative, expressed
UniProt A0A1Z5RD39 , A0A1Z5RCQ0 , C5YFT2
Pfam PF00850
Panther DB PTHR10625 PTHR10625:SF124
NCBI CDD -
KEGG Orthology K06067; histone deacetylase 1/2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G44680 : histone deacetylase 9
RAP-DB (Rice) LOC_Os04g33480.1 : histone deacetylase, putative, expressed
MaizeGDB (Corn) Zm00025a011539
Brachypodium KQJ82484 , KQJ82485 , KQJ82486 , KQJ82482 , KQJ82483
Barley HORVU2Hr1G072600.7 , HORVU2Hr1G072600.6 , HORVU2Hr1G072600.5 , HORVU2Hr1G072600.4 , HORVU2Hr1G072600.3 , HORVU2Hr1G072600.2 , HORVU2Hr1G072600.1 , HORVU2Hr1G072600.9 , HORVU2Hr1G072600.11 , HORVU2Hr1G072600.10 , HORVU2Hr1G072570.1 , HORVU2Hr1G072570.3 , HORVU2Hr1G072570.2 , HORVU2Hr1G072570.5 , HORVU2Hr1G072570.4 , HORVU2Hr1G072570.7 , HORVU2Hr1G072570.6
Wheat TraesCS2D02G291000 , TraesCS2A02G293200 , TraesCS2A02G293200 , TraesCS2B02G309700 , TraesCS2B02G309700
Populus PNT60232 , PNT60231 , PNT60230 , PNT60229


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G357100 SUMO-activating enzyme subunit 2, putative, expressed K10685: UBLE1B, SAE2, ubiquitin-like 1-activating enzyme E1 B
2 Sobic.004G355800 expressed protein -
3 Sobic.006G240100 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
4 Sobic.006G080400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11851: ubiquitin carboxyl-terminal hydrolase 30
5 Sobic.004G155600 dnaJ domain containing protein, expressed -
6 Sobic.003G312700 glycosyl hydrolase family 47 domain contain protein, expressed K10085: ER degradation enhancer, mannosidase alpha-like 2
7 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
8 Sobic.005G200900 SCC3, putative, expressed K06671: STAG1_2, SCC3, cohesin complex subunit SA-1/2
9 Sobic.001G461400 pre-mRNA-processing factor 39, putative, expressed K13217: PRPF39, pre-mRNA-processing factor 39
10 Sobic.006G270600 PSF1 - Putative GINS complex subunit, expressed K10732: GINS1, GINS complex subunit 1
11 Sobic.004G156500 expressed protein -
12 Sobic.006G118700 MYB family transcription factor, putative, expressed -
13 Sobic.004G129300 chromatin modification-related protein EAF3, putative, expressed K11339: MORF4L1, MRG15, mortality factor 4-like protein 1
14 Sobic.002G051750 - -
15 Sobic.007G091600 proline rich protein 3, putative, expressed -
16 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
17 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
18 Sobic.008G002500 RCD1, putative, expressed -
19 Sobic.003G042400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
20 Sobic.001G087600 ZOS9-03 - C2H2 zinc finger protein, expressed -


Gene co-expression network
sample Sobic006G067600 Sobic006G067600 Sobic002G357100 Sobic002G357100 Sobic006G067600--Sobic002G357100 Sobic004G355800 Sobic004G355800 Sobic006G067600--Sobic004G355800 Sobic006G240100 Sobic006G240100 Sobic006G067600--Sobic006G240100 Sobic006G080400 Sobic006G080400 Sobic006G067600--Sobic006G080400 Sobic004G155600 Sobic004G155600 Sobic006G067600--Sobic004G155600 Sobic003G312700 Sobic003G312700 Sobic006G067600--Sobic003G312700 Sobic001G346900 Sobic001G346900 Sobic006G067600--Sobic001G346900 Sobic005G200900 Sobic005G200900 Sobic006G067600--Sobic005G200900 Sobic001G461400 Sobic001G461400 Sobic006G067600--Sobic001G461400 Sobic004G156500 Sobic004G156500 Sobic002G357100--Sobic004G156500 Sobic002G357100--Sobic006G067600 Sobic006G210000 Sobic006G210000 Sobic002G357100--Sobic006G210000 Sobic009G129600 Sobic009G129600 Sobic002G357100--Sobic009G129600 Sobic007G183300 Sobic007G183300 Sobic002G357100--Sobic007G183300 Sobic007G091600 Sobic007G091600 Sobic002G357100--Sobic007G091600 Sobic009G151200 Sobic009G151200 Sobic002G357100--Sobic009G151200 Sobic008G100100 Sobic008G100100 Sobic002G357100--Sobic008G100100 Sobic004G129300 Sobic004G129300 Sobic002G357100--Sobic004G129300 Sobic004G355800--Sobic005G200900 Sobic006G118700 Sobic006G118700 Sobic004G355800--Sobic006G118700 Sobic004G355800--Sobic006G210000 Sobic002G154000 Sobic002G154000 Sobic004G355800--Sobic002G154000 Sobic004G355800--Sobic004G155600 Sobic005G191900 Sobic005G191900 Sobic004G355800--Sobic005G191900 Sobic004G355800--Sobic006G067600 Sobic004G355800--Sobic004G156500 Sobic008G002500 Sobic008G002500 Sobic004G355800--Sobic008G002500 Sobic009G044800 Sobic009G044800 Sobic006G240100--Sobic009G044800 Sobic003G416700 Sobic003G416700 Sobic006G240100--Sobic003G416700 Sobic006G240100--Sobic002G154000 Sobic007G132100 Sobic007G132100 Sobic006G240100--Sobic007G132100 Sobic007G218000 Sobic007G218000 Sobic006G240100--Sobic007G218000 Sobic003G360400 Sobic003G360400 Sobic006G240100--Sobic003G360400 Sobic010G204400 Sobic010G204400 Sobic006G240100--Sobic010G204400 Sobic001G354600 Sobic001G354600 Sobic006G240100--Sobic001G354600 Sobic004G072100 Sobic004G072100 Sobic006G240100--Sobic004G072100 Sobic006G080400--Sobic008G002500 Sobic006G080400--Sobic001G461400 Sobic006G080400--Sobic004G155600 Sobic002G405500 Sobic002G405500 Sobic006G080400--Sobic002G405500 Sobic001G063700 Sobic001G063700 Sobic006G080400--Sobic001G063700 Sobic006G080400--Sobic002G154000 Sobic006G080400--Sobic004G355800 Sobic006G040800 Sobic006G040800 Sobic006G080400--Sobic006G040800 Sobic006G080400--Sobic003G360400 Sobic006G014100 Sobic006G014100 Sobic004G155600--Sobic006G014100 Sobic006G270600 Sobic006G270600 Sobic004G155600--Sobic006G270600 Sobic004G155600--Sobic006G080400 Sobic004G155600--Sobic004G355800 Sobic002G425500 Sobic002G425500 Sobic004G155600--Sobic002G425500 Sobic004G155600--Sobic006G118700 Sobic004G155600--Sobic006G210000 Sobic002G145800 Sobic002G145800 Sobic004G155600--Sobic002G145800 Sobic001G002600 Sobic001G002600 Sobic004G155600--Sobic001G002600 Sobic001G087600 Sobic001G087600 Sobic003G312700--Sobic001G087600 Sobic001G014300 Sobic001G014300 Sobic003G312700--Sobic001G014300 Sobic003G405500 Sobic003G405500 Sobic003G312700--Sobic003G405500 Sobic004G141800 Sobic004G141800 Sobic003G312700--Sobic004G141800 Sobic002G430300 Sobic002G430300 Sobic003G312700--Sobic002G430300 Sobic003G312700--Sobic004G355800 Sobic003G152400 Sobic003G152400 Sobic003G312700--Sobic003G152400 Sobic002G063900 Sobic002G063900 Sobic003G312700--Sobic002G063900 Sobic008G140700 Sobic008G140700 Sobic003G312700--Sobic008G140700 Sobic004G086200 Sobic004G086200 Sobic001G346900--Sobic004G086200 Sobic003G409200 Sobic003G409200 Sobic001G346900--Sobic003G409200 Sobic001G134300 Sobic001G134300 Sobic001G346900--Sobic001G134300 Sobic003G042400 Sobic003G042400 Sobic001G346900--Sobic003G042400 Sobic008G147200 Sobic008G147200 Sobic001G346900--Sobic008G147200 Sobic004G285000 Sobic004G285000 Sobic001G346900--Sobic004G285000 Sobic001G346900--Sobic003G416700 Sobic010G096000 Sobic010G096000 Sobic001G346900--Sobic010G096000 Sobic002G422100 Sobic002G422100 Sobic001G346900--Sobic002G422100 Sobic005G200900--Sobic004G355800 Sobic005G200900--Sobic002G154000 Sobic005G200900--Sobic003G360400 Sobic009G251500 Sobic009G251500 Sobic005G200900--Sobic009G251500 Sobic009G088000 Sobic009G088000 Sobic005G200900--Sobic009G088000 Sobic005G200900--Sobic006G118700 Sobic005G200900--Sobic006G210000 Sobic005G200900--Sobic004G156500 Sobic005G200900--Sobic008G002500 Sobic001G461400--Sobic001G063700 Sobic001G461400--Sobic003G416700 Sobic002G264200 Sobic002G264200 Sobic001G461400--Sobic002G264200 Sobic001G461400--Sobic002G154000 Sobic001G461400--Sobic001G087600 Sobic005G200800 Sobic005G200800 Sobic001G461400--Sobic005G200800 Sobic001G461400--Sobic003G360400 Sobic002G071500 Sobic002G071500 Sobic001G461400--Sobic002G071500 Sobic010G112100 Sobic010G112100 Sobic001G461400--Sobic010G112100
Octagon: transcription factors


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