Gene annotation
Transcriptome id Sobic.006G270600.5,Sobic.006G270600.3,Sobic.006G270600.4
Synonym Sb06g033210, PSF1
Functional annotation PSF1 - Putative GINS complex subunit, expressed
UniProt A0A1B6PP58
Pfam PF05916
Panther DB PTHR12914:SF2 PTHR12914 PTHR12914 PTHR12914:SF2
NCBI CDD KOG3303; Predicted alpha-helical protein, potentially involved in replication/repair
KEGG Orthology K10732; GINS1, GINS complex subunit 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G80190 : partner of SLD five 1
RAP-DB (Rice) LOC_Os05g37980.1 : PSF1 - Putative GINS complex subunit, expressed
MaizeGDB (Corn) Zm00025a009260
Brachypodium KQJ86581 , KQJ86582 , PNT62646 , PNT62647
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G155600 dnaJ domain containing protein, expressed -
2 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
3 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
4 Sobic.010G264000 expressed protein(PubMedID : 28640841)@expressed protein -
5 Sobic.002G295500 expressed protein -
6 Sobic.009G131900 - K18177: cytochrome c oxidase assembly factor 4
7 Sobic.006G014100 serine-rich 25 kDa antigen protein, putative, expressed -
8 Sobic.001G492200 OsFBK11 - F-box domain and kelch repeat containing protein, expressed -
9 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
10 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase
11 Sobic.003G182300 zinc finger family protein, putative, expressed K16284: E3 ubiquitin-protein ligase SIS3
12 Sobic.003G363700 OsFBL5 - F-box domain and LRR containing protein, expressed -
13 Sobic.004G156800 RNA pseudouridine synthase, putative, expressed -
14 Sobic.006G067600 histone deacetylase, putative, expressed K06067: histone deacetylase 1/2
15 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
16 Sobic.001G542450 - -
17 Sobic.008G129600 glucosidase II beta subunit-like domain containing protein, expressed K10088: protein OS-9
18 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
19 Sobic.005G115500 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed K13998: dihydrofolate reductase / thymidylate synthase
20 Sobic.007G134100 expressed protein -


Gene co-expression network
sample Sobic006G270600 Sobic006G270600 Sobic004G155600 Sobic004G155600 Sobic006G270600--Sobic004G155600 Sobic003G132000 Sobic003G132000 Sobic006G270600--Sobic003G132000 Sobic001G259000 Sobic001G259000 Sobic006G270600--Sobic001G259000 Sobic010G264000 Sobic010G264000 Sobic006G270600--Sobic010G264000 Sobic002G295500 Sobic002G295500 Sobic006G270600--Sobic002G295500 Sobic009G131900 Sobic009G131900 Sobic006G270600--Sobic009G131900 Sobic006G014100 Sobic006G014100 Sobic006G270600--Sobic006G014100 Sobic001G492200 Sobic001G492200 Sobic006G270600--Sobic001G492200 Sobic001G114500 Sobic001G114500 Sobic006G270600--Sobic001G114500 Sobic004G155600--Sobic006G014100 Sobic004G155600--Sobic006G270600 Sobic006G080400 Sobic006G080400 Sobic004G155600--Sobic006G080400 Sobic004G355800 Sobic004G355800 Sobic004G155600--Sobic004G355800 Sobic002G425500 Sobic002G425500 Sobic004G155600--Sobic002G425500 Sobic006G118700 Sobic006G118700 Sobic004G155600--Sobic006G118700 Sobic006G210000 Sobic006G210000 Sobic004G155600--Sobic006G210000 Sobic002G145800 Sobic002G145800 Sobic004G155600--Sobic002G145800 Sobic001G002600 Sobic001G002600 Sobic004G155600--Sobic001G002600 Sobic003G132000--Sobic001G114500 Sobic003G132000--Sobic006G270600 Sobic003G046300 Sobic003G046300 Sobic003G132000--Sobic003G046300 Sobic008G103300 Sobic008G103300 Sobic003G132000--Sobic008G103300 Sobic001G487100 Sobic001G487100 Sobic003G132000--Sobic001G487100 Sobic004G192900 Sobic004G192900 Sobic003G132000--Sobic004G192900 Sobic009G164000 Sobic009G164000 Sobic003G132000--Sobic009G164000 Sobic002G371700 Sobic002G371700 Sobic003G132000--Sobic002G371700 Sobic003G363700 Sobic003G363700 Sobic003G132000--Sobic003G363700 Sobic009G143800 Sobic009G143800 Sobic001G259000--Sobic009G143800 Sobic004G156800 Sobic004G156800 Sobic001G259000--Sobic004G156800 Sobic001G259000--Sobic006G270600 Sobic009G101200 Sobic009G101200 Sobic001G259000--Sobic009G101200 Sobic001G145400 Sobic001G145400 Sobic001G259000--Sobic001G145400 Sobic008G160000 Sobic008G160000 Sobic001G259000--Sobic008G160000 Sobic007G039400 Sobic007G039400 Sobic001G259000--Sobic007G039400 Sobic004G340400 Sobic004G340400 Sobic001G259000--Sobic004G340400 Sobic009G138700 Sobic009G138700 Sobic001G259000--Sobic009G138700 Sobic010G264000--Sobic006G270600 Sobic008G129600 Sobic008G129600 Sobic010G264000--Sobic008G129600 Sobic010G264000--Sobic008G103300 Sobic001G042200 Sobic001G042200 Sobic010G264000--Sobic001G042200 Sobic010G235200 Sobic010G235200 Sobic010G264000--Sobic010G235200 Sobic010G264000--Sobic003G363700 Sobic003G182300 Sobic003G182300 Sobic010G264000--Sobic003G182300 Sobic010G264000--Sobic001G492200 Sobic006G142400 Sobic006G142400 Sobic010G264000--Sobic006G142400 Sobic003G104000 Sobic003G104000 Sobic002G295500--Sobic003G104000 Sobic009G044800 Sobic009G044800 Sobic002G295500--Sobic009G044800 Sobic003G416700 Sobic003G416700 Sobic002G295500--Sobic003G416700 Sobic006G224800 Sobic006G224800 Sobic002G295500--Sobic006G224800 Sobic004G353000 Sobic004G353000 Sobic002G295500--Sobic004G353000 Sobic007G183900 Sobic007G183900 Sobic002G295500--Sobic007G183900 Sobic006G240100 Sobic006G240100 Sobic002G295500--Sobic006G240100 Sobic007G132100 Sobic007G132100 Sobic002G295500--Sobic007G132100 Sobic006G200700 Sobic006G200700 Sobic002G295500--Sobic006G200700 Sobic009G131900--Sobic003G104000 Sobic009G131900--Sobic006G270600 Sobic004G316700 Sobic004G316700 Sobic009G131900--Sobic004G316700 Sobic007G042900 Sobic007G042900 Sobic009G131900--Sobic007G042900 Sobic009G131900--Sobic003G182300 Sobic009G131900--Sobic010G235200 Sobic006G131000 Sobic006G131000 Sobic009G131900--Sobic006G131000 Sobic009G131900--Sobic008G129600 Sobic009G131900--Sobic010G264000 Sobic006G014100--Sobic004G155600 Sobic010G237900 Sobic010G237900 Sobic006G014100--Sobic010G237900 Sobic004G266900 Sobic004G266900 Sobic006G014100--Sobic004G266900 Sobic007G191700 Sobic007G191700 Sobic006G014100--Sobic007G191700 Sobic001G395100 Sobic001G395100 Sobic006G014100--Sobic001G395100 Sobic006G014100--Sobic006G270600 Sobic006G014100--Sobic001G002600 Sobic003G379200 Sobic003G379200 Sobic006G014100--Sobic003G379200 Sobic008G047300 Sobic008G047300 Sobic006G014100--Sobic008G047300 Sobic001G492200--Sobic003G363700 Sobic001G492200--Sobic003G182300 Sobic001G492200--Sobic006G270600 Sobic001G492200--Sobic008G103300 Sobic001G492200--Sobic001G395100 Sobic001G449900 Sobic001G449900 Sobic001G492200--Sobic001G449900 Sobic004G309900 Sobic004G309900 Sobic001G492200--Sobic004G309900 Sobic001G492200--Sobic002G295500 Sobic001G492200--Sobic004G155600 Sobic001G114500--Sobic003G132000 Sobic003G121300 Sobic003G121300 Sobic001G114500--Sobic003G121300 Sobic001G114500--Sobic008G103300 Sobic001G114500--Sobic009G164000 Sobic001G473600 Sobic001G473600 Sobic001G114500--Sobic001G473600 Sobic007G084100 Sobic007G084100 Sobic001G114500--Sobic007G084100 Sobic005G160400 Sobic005G160400 Sobic001G114500--Sobic005G160400 Sobic009G258400 Sobic009G258400 Sobic001G114500--Sobic009G258400 Sobic001G114500--Sobic004G156800
Octagon: transcription factors


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