Gene annotation
Transcriptome id Sobic.002G295500.1
Synonym Sb02g032680, MED8
Functional annotation expressed protein
UniProt C5X7U8
Pfam -
Panther DB PTHR35552 PTHR35552:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G03070 : mediator subunit 8
RAP-DB (Rice) LOC_Os03g31010.1 : expressed protein
MaizeGDB (Corn) Zm00025a047894
Brachypodium KQJ91453 , KQJ91452 , KQJ91451
Barley HORVU5Hr1G089010.12 , HORVU5Hr1G089010.11 , HORVU5Hr1G089010.10 , HORVU5Hr1G089010.9 , HORVU5Hr1G089010.8 , HORVU5Hr1G089010.3 , HORVU5Hr1G089010.2 , HORVU5Hr1G089010.1 , HORVU5Hr1G089010.7 , HORVU5Hr1G089010.6 , HORVU5Hr1G089010.5 , HORVU5Hr1G089010.4
Wheat TraesCS5A02G361500 , TraesCS5A02G361500 , TraesCS5A02G361500 , TraesCS5B02G364100 , TraesCS5B02G364100 , TraesCS5B02G364100 , TraesCS5B02G364100 , TraesCS5D02G370400 , TraesCS5D02G370400 , TraesCS5D02G370400 , TraesCS5D02G370400 , TraesCS5D02G370400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
2 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
3 Sobic.003G416700 homeobox domain containing protein, expressed -
4 Sobic.006G224800 expressed protein -
5 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
6 Sobic.007G183900 ubiquitin family protein, putative, expressed -
7 Sobic.006G240100 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
8 Sobic.007G132100 myrosinase precursor, putative, expressed -
9 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
10 Sobic.002G366400 histone deacetylase, putative, expressed K11407: histone deacetylase 6
11 Sobic.006G088200 nonsense-mediated decay UPF3, putative, expressed K14328: UPF3, regulator of nonsense transcripts 3
12 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
13 Sobic.004G323700 zinc finger family protein, putative, expressed -
14 Sobic.004G155600 dnaJ domain containing protein, expressed -
15 Sobic.002G045600 transcriptional corepressor SEUSS, putative, expressed -
16 Sobic.003G379200 wound-responsive family protein, putative, expressed -
17 Sobic.006G270600 PSF1 - Putative GINS complex subunit, expressed K10732: GINS1, GINS complex subunit 1
18 Sobic.003G062300 NF-X1-type zinc finger protein, putative, expressed K15683: NFXL1, NF-X1-type zinc finger protein NFXL1
19 Sobic.003G212900 zinc ion binding protein, putative, expressed -
20 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1


Gene co-expression network
sample Sobic002G295500 Sobic002G295500 Sobic003G104000 Sobic003G104000 Sobic002G295500--Sobic003G104000 Sobic009G044800 Sobic009G044800 Sobic002G295500--Sobic009G044800 Sobic003G416700 Sobic003G416700 Sobic002G295500--Sobic003G416700 Sobic006G224800 Sobic006G224800 Sobic002G295500--Sobic006G224800 Sobic004G353000 Sobic004G353000 Sobic002G295500--Sobic004G353000 Sobic007G183900 Sobic007G183900 Sobic002G295500--Sobic007G183900 Sobic006G240100 Sobic006G240100 Sobic002G295500--Sobic006G240100 Sobic007G132100 Sobic007G132100 Sobic002G295500--Sobic007G132100 Sobic006G200700 Sobic006G200700 Sobic002G295500--Sobic006G200700 Sobic003G337300 Sobic003G337300 Sobic003G104000--Sobic003G337300 Sobic002G256700 Sobic002G256700 Sobic003G104000--Sobic002G256700 Sobic006G126100 Sobic006G126100 Sobic003G104000--Sobic006G126100 Sobic001G251100 Sobic001G251100 Sobic003G104000--Sobic001G251100 Sobic002G142900 Sobic002G142900 Sobic003G104000--Sobic002G142900 Sobic003G104000--Sobic002G295500 Sobic004G277200 Sobic004G277200 Sobic003G104000--Sobic004G277200 Sobic004G131300 Sobic004G131300 Sobic003G104000--Sobic004G131300 Sobic006G261400 Sobic006G261400 Sobic003G104000--Sobic006G261400 Sobic003G360400 Sobic003G360400 Sobic009G044800--Sobic003G360400 Sobic003G352200 Sobic003G352200 Sobic009G044800--Sobic003G352200 Sobic001G227400 Sobic001G227400 Sobic009G044800--Sobic001G227400 Sobic002G045600 Sobic002G045600 Sobic009G044800--Sobic002G045600 Sobic010G116600 Sobic010G116600 Sobic009G044800--Sobic010G116600 Sobic007G218000 Sobic007G218000 Sobic009G044800--Sobic007G218000 Sobic001G025000 Sobic001G025000 Sobic009G044800--Sobic001G025000 Sobic001G433800 Sobic001G433800 Sobic009G044800--Sobic001G433800 Sobic009G044800--Sobic007G183900 Sobic002G154000 Sobic002G154000 Sobic003G416700--Sobic002G154000 Sobic002G264200 Sobic002G264200 Sobic003G416700--Sobic002G264200 Sobic001G461400 Sobic001G461400 Sobic003G416700--Sobic001G461400 Sobic003G416700--Sobic007G183900 Sobic001G051700 Sobic001G051700 Sobic003G416700--Sobic001G051700 Sobic003G416700--Sobic003G360400 Sobic009G119000 Sobic009G119000 Sobic003G416700--Sobic009G119000 Sobic001G063700 Sobic001G063700 Sobic003G416700--Sobic001G063700 Sobic010G275500 Sobic010G275500 Sobic003G416700--Sobic010G275500 Sobic003G062300 Sobic003G062300 Sobic006G224800--Sobic003G062300 Sobic006G224800--Sobic003G416700 Sobic006G166200 Sobic006G166200 Sobic006G224800--Sobic006G166200 Sobic003G189600 Sobic003G189600 Sobic006G224800--Sobic003G189600 Sobic004G053500 Sobic004G053500 Sobic006G224800--Sobic004G053500 Sobic009G249700 Sobic009G249700 Sobic006G224800--Sobic009G249700 Sobic004G051200 Sobic004G051200 Sobic006G224800--Sobic004G051200 Sobic006G224800--Sobic002G295500 Sobic002G430300 Sobic002G430300 Sobic006G224800--Sobic002G430300 Sobic004G353000--Sobic006G200700 Sobic009G143800 Sobic009G143800 Sobic004G353000--Sobic009G143800 Sobic004G353000--Sobic010G116600 Sobic004G353000--Sobic007G183900 Sobic002G371300 Sobic002G371300 Sobic004G353000--Sobic002G371300 Sobic002G371700 Sobic002G371700 Sobic004G353000--Sobic002G371700 Sobic004G353000--Sobic009G044800 Sobic001G473600 Sobic001G473600 Sobic004G353000--Sobic001G473600 Sobic001G291800 Sobic001G291800 Sobic004G353000--Sobic001G291800 Sobic007G183900--Sobic003G416700 Sobic006G118700 Sobic006G118700 Sobic007G183900--Sobic006G118700 Sobic007G183900--Sobic003G360400 Sobic010G236400 Sobic010G236400 Sobic007G183900--Sobic010G236400 Sobic007G183900--Sobic009G044800 Sobic010G069100 Sobic010G069100 Sobic007G183900--Sobic010G069100 Sobic007G183900--Sobic010G275500 Sobic001G354600 Sobic001G354600 Sobic007G183900--Sobic001G354600 Sobic007G183900--Sobic002G264200 Sobic006G240100--Sobic009G044800 Sobic006G240100--Sobic003G416700 Sobic006G240100--Sobic002G154000 Sobic006G240100--Sobic007G132100 Sobic006G240100--Sobic007G218000 Sobic006G240100--Sobic003G360400 Sobic010G204400 Sobic010G204400 Sobic006G240100--Sobic010G204400 Sobic006G240100--Sobic001G354600 Sobic004G072100 Sobic004G072100 Sobic006G240100--Sobic004G072100 Sobic007G132100--Sobic007G218000 Sobic007G132100--Sobic004G072100 Sobic004G039600 Sobic004G039600 Sobic007G132100--Sobic004G039600 Sobic004G178200 Sobic004G178200 Sobic007G132100--Sobic004G178200 Sobic006G131000 Sobic006G131000 Sobic007G132100--Sobic006G131000 Sobic006G012500 Sobic006G012500 Sobic007G132100--Sobic006G012500 Sobic007G132100--Sobic009G044800 Sobic008G099800 Sobic008G099800 Sobic007G132100--Sobic008G099800 Sobic007G132100--Sobic010G204400 Sobic006G200700--Sobic004G353000 Sobic006G208500 Sobic006G208500 Sobic006G200700--Sobic006G208500 Sobic008G014500 Sobic008G014500 Sobic006G200700--Sobic008G014500 Sobic006G200700--Sobic010G116600 Sobic006G204800 Sobic006G204800 Sobic006G200700--Sobic006G204800 Sobic001G522600 Sobic001G522600 Sobic006G200700--Sobic001G522600 Sobic003G006400 Sobic003G006400 Sobic006G200700--Sobic003G006400 Sobic006G200700--Sobic004G277200 Sobic006G200700--Sobic009G044800
Octagon: transcription factors


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