Gene annotation
Transcriptome id Sobic.003G062300.1
Synonym Sb03g005310, ATNFXL2
Functional annotation NF-X1-type zinc finger protein, putative, expressed
UniProt C5XP82
Pfam PF01422
Panther DB PTHR12360
NCBI CDD KOG1952; Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains
KEGG Orthology K15683; NFXL1, NF-X1-type zinc finger protein NFXL1
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT5G05660 : sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors
RAP-DB (Rice) LOC_Os01g06550.1 : NF-X1-type zinc finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a035664
Brachypodium KQK02230
Barley HORVU3Hr1G025750.12 , HORVU3Hr1G025750.10 , HORVU3Hr1G025750.11 , HORVU3Hr1G025750.8 , HORVU3Hr1G025750.9 , HORVU3Hr1G025750.1 , HORVU3Hr1G025750.2 , HORVU3Hr1G025750.3 , HORVU3Hr1G025750.4 , HORVU3Hr1G025750.5 , HORVU3Hr1G025750.6 , HORVU3Hr1G025750.7
Wheat TraesCS3B02G153700 , TraesCS3A02G310700 , TraesCS3A02G310700 , TraesCS3D02G136600 , TraesCS3D02G136600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G224800 expressed protein -
2 Sobic.004G309900 cold-induced protein, putative, expressed K13174: THO complex subunit 5
3 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
4 Sobic.003G416700 homeobox domain containing protein, expressed -
5 Sobic.005G220000 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
6 Sobic.001G051700 expressed protein -
7 Sobic.002G164200 PFT1, putative, expressed K15168: mediator of RNA polymerase II transcription subunit 25
8 Sobic.003G214600 transcriptional corepressor LEUNIG, putative, expressed -
9 Sobic.007G183300 expressed protein -
10 Sobic.002G295500 expressed protein -
11 Sobic.010G000800 PHD-finger domain containing protein, expressed -
12 Sobic.006G077200 ubiquitin interaction motif-containing protein, putative, expressed -
13 Sobic.005G133800 NEF1, putative, expressed -
14 Sobic.010G001100 chromo domain containing protein, expressed -
15 Sobic.004G096400 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
16 Sobic.001G393900 FAD binding domain containing protein, expressed -
17 Sobic.006G088200 nonsense-mediated decay UPF3, putative, expressed K14328: UPF3, regulator of nonsense transcripts 3
18 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1
19 Sobic.001G542450 - -
20 Sobic.002G430300 HEAT repeat family protein, putative, expressed K06100: symplekin


Gene co-expression network
sample Sobic003G062300 Sobic003G062300 Sobic006G224800 Sobic006G224800 Sobic003G062300--Sobic006G224800 Sobic004G309900 Sobic004G309900 Sobic003G062300--Sobic004G309900 Sobic002G145800 Sobic002G145800 Sobic003G062300--Sobic002G145800 Sobic003G416700 Sobic003G416700 Sobic003G062300--Sobic003G416700 Sobic005G220000 Sobic005G220000 Sobic003G062300--Sobic005G220000 Sobic001G051700 Sobic001G051700 Sobic003G062300--Sobic001G051700 Sobic002G164200 Sobic002G164200 Sobic003G062300--Sobic002G164200 Sobic003G214600 Sobic003G214600 Sobic003G062300--Sobic003G214600 Sobic007G183300 Sobic007G183300 Sobic003G062300--Sobic007G183300 Sobic006G224800--Sobic003G062300 Sobic006G224800--Sobic003G416700 Sobic006G166200 Sobic006G166200 Sobic006G224800--Sobic006G166200 Sobic003G189600 Sobic003G189600 Sobic006G224800--Sobic003G189600 Sobic004G053500 Sobic004G053500 Sobic006G224800--Sobic004G053500 Sobic009G249700 Sobic009G249700 Sobic006G224800--Sobic009G249700 Sobic004G051200 Sobic004G051200 Sobic006G224800--Sobic004G051200 Sobic002G295500 Sobic002G295500 Sobic006G224800--Sobic002G295500 Sobic002G430300 Sobic002G430300 Sobic006G224800--Sobic002G430300 Sobic003G133900 Sobic003G133900 Sobic004G309900--Sobic003G133900 Sobic007G183900 Sobic007G183900 Sobic004G309900--Sobic007G183900 Sobic004G309900--Sobic003G062300 Sobic006G077200 Sobic006G077200 Sobic004G309900--Sobic006G077200 Sobic004G096400 Sobic004G096400 Sobic004G309900--Sobic004G096400 Sobic002G366400 Sobic002G366400 Sobic004G309900--Sobic002G366400 Sobic006G210000 Sobic006G210000 Sobic004G309900--Sobic006G210000 Sobic004G309900--Sobic003G416700 Sobic001G008200 Sobic001G008200 Sobic004G309900--Sobic001G008200 Sobic006G269800 Sobic006G269800 Sobic002G145800--Sobic006G269800 Sobic002G145800--Sobic003G416700 Sobic002G145800--Sobic007G183300 Sobic001G087600 Sobic001G087600 Sobic002G145800--Sobic001G087600 Sobic002G145800--Sobic001G051700 Sobic002G145800--Sobic003G062300 Sobic008G147200 Sobic008G147200 Sobic002G145800--Sobic008G147200 Sobic001G023000 Sobic001G023000 Sobic002G145800--Sobic001G023000 Sobic010G186600 Sobic010G186600 Sobic002G145800--Sobic010G186600 Sobic002G154000 Sobic002G154000 Sobic003G416700--Sobic002G154000 Sobic002G264200 Sobic002G264200 Sobic003G416700--Sobic002G264200 Sobic001G461400 Sobic001G461400 Sobic003G416700--Sobic001G461400 Sobic003G416700--Sobic007G183900 Sobic003G416700--Sobic001G051700 Sobic003G360400 Sobic003G360400 Sobic003G416700--Sobic003G360400 Sobic009G119000 Sobic009G119000 Sobic003G416700--Sobic009G119000 Sobic001G063700 Sobic001G063700 Sobic003G416700--Sobic001G063700 Sobic010G275500 Sobic010G275500 Sobic003G416700--Sobic010G275500 Sobic001G111600 Sobic001G111600 Sobic005G220000--Sobic001G111600 Sobic005G220000--Sobic002G145800 Sobic005G220000--Sobic007G183900 Sobic005G128400 Sobic005G128400 Sobic005G220000--Sobic005G128400 Sobic003G293200 Sobic003G293200 Sobic005G220000--Sobic003G293200 Sobic005G220000--Sobic007G183300 Sobic005G220000--Sobic003G062300 Sobic010G085200 Sobic010G085200 Sobic005G220000--Sobic010G085200 Sobic001G026500 Sobic001G026500 Sobic005G220000--Sobic001G026500 Sobic001G051700--Sobic003G416700 Sobic001G051700--Sobic002G145800 Sobic006G267600 Sobic006G267600 Sobic001G051700--Sobic006G267600 Sobic001G051700--Sobic002G154000 Sobic006G261400 Sobic006G261400 Sobic001G051700--Sobic006G261400 Sobic001G051700--Sobic006G224800 Sobic001G051700--Sobic007G183300 Sobic001G051700--Sobic010G275500 Sobic001G051700--Sobic003G062300 Sobic002G164200--Sobic007G183300 Sobic002G164200--Sobic003G062300 Sobic009G182600 Sobic009G182600 Sobic002G164200--Sobic009G182600 Sobic002G164200--Sobic006G224800 Sobic002G164200--Sobic001G051700 Sobic005G133800 Sobic005G133800 Sobic002G164200--Sobic005G133800 Sobic002G029100 Sobic002G029100 Sobic002G164200--Sobic002G029100 Sobic007G000200 Sobic007G000200 Sobic002G164200--Sobic007G000200 Sobic005G200800 Sobic005G200800 Sobic002G164200--Sobic005G200800 Sobic003G214600--Sobic005G200800 Sobic003G214600--Sobic002G029100 Sobic006G088200 Sobic006G088200 Sobic003G214600--Sobic006G088200 Sobic003G408600 Sobic003G408600 Sobic003G214600--Sobic003G408600 Sobic009G255600 Sobic009G255600 Sobic003G214600--Sobic009G255600 Sobic005G008800 Sobic005G008800 Sobic003G214600--Sobic005G008800 Sobic003G214600--Sobic007G183300 Sobic007G163100 Sobic007G163100 Sobic003G214600--Sobic007G163100 Sobic003G214600--Sobic003G360400 Sobic007G183300--Sobic005G200800 Sobic007G183300--Sobic002G145800 Sobic007G183300--Sobic003G416700 Sobic007G183300--Sobic003G214600 Sobic010G279900 Sobic010G279900 Sobic007G183300--Sobic010G279900 Sobic007G183300--Sobic002G154000 Sobic007G183300--Sobic005G220000 Sobic007G168300 Sobic007G168300 Sobic007G183300--Sobic007G168300 Sobic007G183300--Sobic001G051700
Octagon: transcription factors


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