Gene annotation
Transcriptome id Sobic.002G430300.1
Synonym Sb02g044000, ESP4
Functional annotation HEAT repeat family protein, putative, expressed
UniProt A0A1B6QGJ0
Pfam PF11935 PF12295
Panther DB PTHR15245 PTHR15245:SF25
NCBI CDD KOG1895; mRNA cleavage and polyadenylation factor II complex, subunit PTA1
KEGG Orthology K06100; symplekin
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G01400 : HEAT repeat-containing protein
RAP-DB (Rice) LOC_Os07g49320.1 : HEAT repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a049270
Brachypodium KQK14477 , KQK14476
Barley HORVU2Hr1G013790.1 , HORVU2Hr1G013790.26 , HORVU2Hr1G013790.24 , HORVU2Hr1G013790.23 , HORVU2Hr1G013790.22 , HORVU2Hr1G013790.21 , HORVU2Hr1G013790.20 , HORVU2Hr1G013790.25 , HORVU2Hr1G013790.18 , HORVU2Hr1G013790.19 , HORVU2Hr1G013790.16 , HORVU2Hr1G013790.17 , HORVU2Hr1G013790.14 , HORVU2Hr1G013790.15 , HORVU2Hr1G013790.12 , HORVU2Hr1G013790.13 , HORVU2Hr1G013790.10 , HORVU2Hr1G013790.11 , HORVU2Hr1G013790.8 , HORVU2Hr1G013790.9 , HORVU2Hr1G013790.4 , HORVU2Hr1G013790.5 , HORVU2Hr1G013790.6 , HORVU2Hr1G013790.7 , HORVU2Hr1G013790.2 , HORVU2Hr1G013790.3
Wheat TraesCS2B02G098800 , TraesCS2B02G098800 , TraesCS2B02G098800 , TraesCS2B02G098800 , TraesCS2A02G084200 , TraesCS2A02G084200 , TraesCS2D02G082200 , TraesCS2D02G082200 , TraesCS2D02G082200 , TraesCS2B02G098800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G141800 expressed protein -
2 Sobic.001G393700 expressed protein -
3 Sobic.003G405500 mannosyl-oligosaccharide glucosidase, putative, expressed K01228: mannosyl-oligosaccharide glucosidase
4 Sobic.003G152400 WD domain containing protein, putative, expressed K17601: WD repeat-containing protein 81
5 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
6 Sobic.005G133800 NEF1, putative, expressed -
7 Sobic.001G087600 ZOS9-03 - C2H2 zinc finger protein, expressed -
8 Sobic.006G224800 expressed protein -
9 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
10 Sobic.003G052800 RST1, putative, expressed -
11 Sobic.004G236800 MAG2, putative, expressed -
12 Sobic.004G085000 expressed protein K14310: NUP205, nuclear pore complex protein Nup205
13 Sobic.003G312700 glycosyl hydrolase family 47 domain contain protein, expressed K10085: ER degradation enhancer, mannosidase alpha-like 2
14 Sobic.005G115500 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed K13998: dihydrofolate reductase / thymidylate synthase
15 Sobic.004G256500 WD domain, G-beta repeat domain containing protein, expressed K12616: enhancer of mRNA-decapping protein 4
16 Sobic.006G166200 Alg9-like mannosyltransferase protein, putative, expressed K03847: alpha-1,6-mannosyltransferase
17 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1
18 Sobic.007G183300 expressed protein -
19 Sobic.001G035200 ThiF family domain containing protein, putative, expressed K04532: NAE1, amyloid beta precursor protein binding protein 1
20 Sobic.003G062300 NF-X1-type zinc finger protein, putative, expressed K15683: NFXL1, NF-X1-type zinc finger protein NFXL1


Gene co-expression network
sample Sobic002G430300 Sobic002G430300 Sobic004G141800 Sobic004G141800 Sobic002G430300--Sobic004G141800 Sobic001G393700 Sobic001G393700 Sobic002G430300--Sobic001G393700 Sobic003G405500 Sobic003G405500 Sobic002G430300--Sobic003G405500 Sobic003G152400 Sobic003G152400 Sobic002G430300--Sobic003G152400 Sobic001G145400 Sobic001G145400 Sobic002G430300--Sobic001G145400 Sobic005G133800 Sobic005G133800 Sobic002G430300--Sobic005G133800 Sobic001G087600 Sobic001G087600 Sobic002G430300--Sobic001G087600 Sobic006G224800 Sobic006G224800 Sobic002G430300--Sobic006G224800 Sobic002G145800 Sobic002G145800 Sobic002G430300--Sobic002G145800 Sobic004G141800--Sobic002G430300 Sobic004G141800--Sobic003G405500 Sobic004G236800 Sobic004G236800 Sobic004G141800--Sobic004G236800 Sobic002G227500 Sobic002G227500 Sobic004G141800--Sobic002G227500 Sobic001G030000 Sobic001G030000 Sobic004G141800--Sobic001G030000 Sobic003G143800 Sobic003G143800 Sobic004G141800--Sobic003G143800 Sobic003G312700 Sobic003G312700 Sobic004G141800--Sobic003G312700 Sobic001G035200 Sobic001G035200 Sobic004G141800--Sobic001G035200 Sobic002G386600 Sobic002G386600 Sobic004G141800--Sobic002G386600 Sobic001G393700--Sobic002G430300 Sobic001G393700--Sobic001G145400 Sobic010G099800 Sobic010G099800 Sobic001G393700--Sobic010G099800 Sobic005G114800 Sobic005G114800 Sobic001G393700--Sobic005G114800 Sobic001G393700--Sobic006G224800 Sobic001G103300 Sobic001G103300 Sobic001G393700--Sobic001G103300 Sobic001G393700--Sobic003G405500 Sobic003G240700 Sobic003G240700 Sobic001G393700--Sobic003G240700 Sobic009G045200 Sobic009G045200 Sobic001G393700--Sobic009G045200 Sobic003G405500--Sobic001G145400 Sobic008G124800 Sobic008G124800 Sobic003G405500--Sobic008G124800 Sobic003G405500--Sobic002G430300 Sobic009G084900 Sobic009G084900 Sobic003G405500--Sobic009G084900 Sobic006G166200 Sobic006G166200 Sobic003G405500--Sobic006G166200 Sobic003G405500--Sobic004G141800 Sobic006G077200 Sobic006G077200 Sobic003G405500--Sobic006G077200 Sobic010G059500 Sobic010G059500 Sobic003G405500--Sobic010G059500 Sobic003G314700 Sobic003G314700 Sobic003G405500--Sobic003G314700 Sobic004G357100 Sobic004G357100 Sobic003G152400--Sobic004G357100 Sobic007G042400 Sobic007G042400 Sobic003G152400--Sobic007G042400 Sobic003G152400--Sobic002G430300 Sobic004G223600 Sobic004G223600 Sobic003G152400--Sobic004G223600 Sobic008G098300 Sobic008G098300 Sobic003G152400--Sobic008G098300 Sobic003G152400--Sobic009G084900 Sobic002G063900 Sobic002G063900 Sobic003G152400--Sobic002G063900 Sobic004G246100 Sobic004G246100 Sobic003G152400--Sobic004G246100 Sobic003G152400--Sobic001G145400 Sobic006G086600 Sobic006G086600 Sobic001G145400--Sobic006G086600 Sobic001G145400--Sobic001G035200 Sobic001G145400--Sobic010G059500 Sobic001G145400--Sobic006G077200 Sobic001G145400--Sobic003G405500 Sobic010G007100 Sobic010G007100 Sobic001G145400--Sobic010G007100 Sobic004G340400 Sobic004G340400 Sobic001G145400--Sobic004G340400 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic005G133800--Sobic006G166200 Sobic004G053500 Sobic004G053500 Sobic005G133800--Sobic004G053500 Sobic005G133800--Sobic002G430300 Sobic005G133800--Sobic006G224800 Sobic005G110499 Sobic005G110499 Sobic005G133800--Sobic005G110499 Sobic005G133800--Sobic003G405500 Sobic004G256500 Sobic004G256500 Sobic005G133800--Sobic004G256500 Sobic003G062300 Sobic003G062300 Sobic005G133800--Sobic003G062300 Sobic001G058200 Sobic001G058200 Sobic005G133800--Sobic001G058200 Sobic001G151100 Sobic001G151100 Sobic001G087600--Sobic001G151100 Sobic001G461400 Sobic001G461400 Sobic001G087600--Sobic001G461400 Sobic001G020000 Sobic001G020000 Sobic001G087600--Sobic001G020000 Sobic001G087600--Sobic002G145800 Sobic002G154000 Sobic002G154000 Sobic001G087600--Sobic002G154000 Sobic003G416700 Sobic003G416700 Sobic001G087600--Sobic003G416700 Sobic001G087600--Sobic002G430300 Sobic005G167700 Sobic005G167700 Sobic001G087600--Sobic005G167700 Sobic002G371700 Sobic002G371700 Sobic001G087600--Sobic002G371700 Sobic006G224800--Sobic003G062300 Sobic006G224800--Sobic003G416700 Sobic006G224800--Sobic006G166200 Sobic003G189600 Sobic003G189600 Sobic006G224800--Sobic003G189600 Sobic006G224800--Sobic004G053500 Sobic009G249700 Sobic009G249700 Sobic006G224800--Sobic009G249700 Sobic004G051200 Sobic004G051200 Sobic006G224800--Sobic004G051200 Sobic002G295500 Sobic002G295500 Sobic006G224800--Sobic002G295500 Sobic006G224800--Sobic002G430300 Sobic006G269800 Sobic006G269800 Sobic002G145800--Sobic006G269800 Sobic002G145800--Sobic003G416700 Sobic007G183300 Sobic007G183300 Sobic002G145800--Sobic007G183300 Sobic002G145800--Sobic001G087600 Sobic001G051700 Sobic001G051700 Sobic002G145800--Sobic001G051700 Sobic002G145800--Sobic003G062300 Sobic008G147200 Sobic008G147200 Sobic002G145800--Sobic008G147200 Sobic001G023000 Sobic001G023000 Sobic002G145800--Sobic001G023000 Sobic010G186600 Sobic010G186600 Sobic002G145800--Sobic010G186600
Octagon: transcription factors


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