Gene annotation
Transcriptome id Sobic.004G085000.1
Synonym Sb04g007000
Functional annotation expressed protein
UniProt A0A194YNI4
Pfam PF11894
Panther DB PTHR31344 PTHR31344:SF0
NCBI CDD -
KEGG Orthology K14310; NUP205, nuclear pore complex protein Nup205
Gene Ontology GO:0005643; nuclear pore


Orthologs (automatic annotation)
TAIR AT5G51200 : Protein of unknown function (DUF3414)
RAP-DB (Rice) LOC_Os02g10790.1 : expressed protein
MaizeGDB (Corn) Zm00025a019523
Brachypodium KQJ93919 , KQJ93920
Barley HORVU6Hr1G037960.24 , HORVU6Hr1G037960.25 , HORVU6Hr1G037960.26 , HORVU6Hr1G037960.27 , HORVU6Hr1G037960.22 , HORVU6Hr1G037960.23 , HORVU6Hr1G037960.28 , HORVU6Hr1G037960.29 , HORVU6Hr1G037960.19 , HORVU6Hr1G037960.11 , HORVU6Hr1G037960.10 , HORVU6Hr1G037960.13 , HORVU6Hr1G037960.12 , HORVU6Hr1G037960.17 , HORVU6Hr1G037960.18 , HORVU6Hr1G037960.15 , HORVU6Hr1G037960.14 , HORVU6Hr1G037960.16 , HORVU6Hr1G037960.20 , HORVU6Hr1G037960.21 , HORVU6Hr1G037960.9 , HORVU6Hr1G037960.8 , HORVU6Hr1G037960.5 , HORVU6Hr1G037960.4 , HORVU6Hr1G037960.7 , HORVU6Hr1G037960.6 , HORVU6Hr1G037960.1 , HORVU6Hr1G037960.3 , HORVU6Hr1G037960.2 , HORVU6Hr1G037960.35 , HORVU6Hr1G037960.34 , HORVU6Hr1G037960.33 , HORVU6Hr1G037960.32 , HORVU6Hr1G037960.31 , HORVU6Hr1G037960.30
Wheat TraesCS6D02G168300 , TraesCS6D02G168300 , TraesCS6D02G168300 , TraesCS6B02G210100 , TraesCS6B02G210100 , TraesCS6B02G210100 , TraesCS6B02G210100 , TraesCS6A02G175000 , TraesCS6A02G175000 , TraesCS6A02G175000 , TraesCS6A02G175000 , TraesCS6A02G175000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
2 Sobic.010G114900 expressed protein -
3 Sobic.006G185200 RNA polymerase IV subunit, putative, expressed K16250: DNA-directed RNA polymerase IV subunit 1
4 Sobic.003G199300 down-regulated in metastasis family protein, expressed K14772: U3 small nucleolar RNA-associated protein 20
5 Sobic.005G010900 expressed protein K14311: nuclear pore complex protein Nup188
6 Sobic.001G219900 expressed protein -
7 Sobic.002G430300 HEAT repeat family protein, putative, expressed K06100: symplekin
8 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
9 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
10 Sobic.004G256500 WD domain, G-beta repeat domain containing protein, expressed K12616: enhancer of mRNA-decapping protein 4
11 Sobic.009G142000 plus-3 domain containing protein, putative, expressed -
12 Sobic.003G312100 guanine nucleotide exchange family protein, putative, expressed -
13 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
14 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
15 Sobic.007G077900 zinc finger domain, LSD1 subclass family protein, expressed -
16 Sobic.010G147833 - -
17 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
18 Sobic.003G042400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
19 Sobic.003G310900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
20 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21


Gene co-expression network
sample Sobic004G085000 Sobic004G085000 Sobic001G145400 Sobic001G145400 Sobic004G085000--Sobic001G145400 Sobic010G114900 Sobic010G114900 Sobic004G085000--Sobic010G114900 Sobic006G185200 Sobic006G185200 Sobic004G085000--Sobic006G185200 Sobic003G199300 Sobic003G199300 Sobic004G085000--Sobic003G199300 Sobic005G010900 Sobic005G010900 Sobic004G085000--Sobic005G010900 Sobic001G219900 Sobic001G219900 Sobic004G085000--Sobic001G219900 Sobic002G430300 Sobic002G430300 Sobic004G085000--Sobic002G430300 Sobic009G101200 Sobic009G101200 Sobic004G085000--Sobic009G101200 Sobic006G086600 Sobic006G086600 Sobic004G085000--Sobic006G086600 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic010G059500 Sobic010G059500 Sobic001G145400--Sobic010G059500 Sobic006G077200 Sobic006G077200 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic010G007100 Sobic010G007100 Sobic001G145400--Sobic010G007100 Sobic004G340400 Sobic004G340400 Sobic001G145400--Sobic004G340400 Sobic009G084900 Sobic009G084900 Sobic001G145400--Sobic009G084900 Sobic001G145400--Sobic004G085000 Sobic007G077900 Sobic007G077900 Sobic010G114900--Sobic007G077900 Sobic010G114900--Sobic004G085000 Sobic001G453400 Sobic001G453400 Sobic010G114900--Sobic001G453400 Sobic003G312100 Sobic003G312100 Sobic010G114900--Sobic003G312100 Sobic007G168300 Sobic007G168300 Sobic010G114900--Sobic007G168300 Sobic010G003400 Sobic010G003400 Sobic010G114900--Sobic010G003400 Sobic007G155500 Sobic007G155500 Sobic010G114900--Sobic007G155500 Sobic010G114900--Sobic005G010900 Sobic001G052400 Sobic001G052400 Sobic010G114900--Sobic001G052400 Sobic002G378100 Sobic002G378100 Sobic006G185200--Sobic002G378100 Sobic006G185200--Sobic004G085000 Sobic008G017100 Sobic008G017100 Sobic006G185200--Sobic008G017100 Sobic001G214600 Sobic001G214600 Sobic006G185200--Sobic001G214600 Sobic009G213200 Sobic009G213200 Sobic006G185200--Sobic009G213200 Sobic010G147833 Sobic010G147833 Sobic006G185200--Sobic010G147833 Sobic004G223600 Sobic004G223600 Sobic006G185200--Sobic004G223600 Sobic004G260100 Sobic004G260100 Sobic006G185200--Sobic004G260100 Sobic006G185200--Sobic001G145400 Sobic002G071400 Sobic002G071400 Sobic003G199300--Sobic002G071400 Sobic008G049100 Sobic008G049100 Sobic003G199300--Sobic008G049100 Sobic003G199300--Sobic004G085000 Sobic010G205900 Sobic010G205900 Sobic003G199300--Sobic010G205900 Sobic001G429600 Sobic001G429600 Sobic003G199300--Sobic001G429600 Sobic003G199300--Sobic002G378100 Sobic009G246500 Sobic009G246500 Sobic003G199300--Sobic009G246500 Sobic010G224700 Sobic010G224700 Sobic003G199300--Sobic010G224700 Sobic003G199300--Sobic006G185200 Sobic005G010900--Sobic004G085000 Sobic001G373800 Sobic001G373800 Sobic005G010900--Sobic001G373800 Sobic005G010900--Sobic010G114900 Sobic004G315500 Sobic004G315500 Sobic005G010900--Sobic004G315500 Sobic005G010900--Sobic003G199300 Sobic002G371600 Sobic002G371600 Sobic005G010900--Sobic002G371600 Sobic005G010900--Sobic008G049100 Sobic006G125500 Sobic006G125500 Sobic005G010900--Sobic006G125500 Sobic003G123100 Sobic003G123100 Sobic005G010900--Sobic003G123100 Sobic003G408600 Sobic003G408600 Sobic001G219900--Sobic003G408600 Sobic002G071500 Sobic002G071500 Sobic001G219900--Sobic002G071500 Sobic001G219900--Sobic004G223600 Sobic001G058700 Sobic001G058700 Sobic001G219900--Sobic001G058700 Sobic002G397500 Sobic002G397500 Sobic001G219900--Sobic002G397500 Sobic001G050600 Sobic001G050600 Sobic001G219900--Sobic001G050600 Sobic010G001100 Sobic010G001100 Sobic001G219900--Sobic010G001100 Sobic009G119000 Sobic009G119000 Sobic001G219900--Sobic009G119000 Sobic008G009700 Sobic008G009700 Sobic001G219900--Sobic008G009700 Sobic004G141800 Sobic004G141800 Sobic002G430300--Sobic004G141800 Sobic001G393700 Sobic001G393700 Sobic002G430300--Sobic001G393700 Sobic002G430300--Sobic003G405500 Sobic003G152400 Sobic003G152400 Sobic002G430300--Sobic003G152400 Sobic002G430300--Sobic001G145400 Sobic005G133800 Sobic005G133800 Sobic002G430300--Sobic005G133800 Sobic001G087600 Sobic001G087600 Sobic002G430300--Sobic001G087600 Sobic006G224800 Sobic006G224800 Sobic002G430300--Sobic006G224800 Sobic002G145800 Sobic002G145800 Sobic002G430300--Sobic002G145800 Sobic009G101200--Sobic006G086600 Sobic009G101200--Sobic010G003400 Sobic009G101200--Sobic001G145400 Sobic001G259000 Sobic001G259000 Sobic009G101200--Sobic001G259000 Sobic009G101200--Sobic004G085000 Sobic009G101200--Sobic001G052400 Sobic009G101200--Sobic009G246500 Sobic009G101200--Sobic001G429600 Sobic006G049600 Sobic006G049600 Sobic009G101200--Sobic006G049600 Sobic006G086600--Sobic010G003400 Sobic006G086600--Sobic001G145400 Sobic001G089600 Sobic001G089600 Sobic006G086600--Sobic001G089600 Sobic006G086600--Sobic009G101200 Sobic006G086600--Sobic001G453400 Sobic004G320500 Sobic004G320500 Sobic006G086600--Sobic004G320500 Sobic002G235200 Sobic002G235200 Sobic006G086600--Sobic002G235200 Sobic007G220300 Sobic007G220300 Sobic006G086600--Sobic007G220300 Sobic006G086600--Sobic010G007100
Octagon: transcription factors


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