Gene annotation
Transcriptome id Sobic.003G310900.2,Sobic.003G310900.4,Sobic.003G310900.3,Sobic.003G310900.5,Sobic.003G310900.1
Synonym UBP13
Functional annotation ubiquitin carboxyl-terminal hydrolase, putative, expressed
UniProt A0A1W0VZT9 , A0A1B6Q6C3 , A0A1W0VZS7 , A0A1B6Q6C2 , A0A1B6Q6D7
Pfam PF00917 PF13423 PF14533 PF12436
Panther DB PTHR24006 PTHR24006:SF445
NCBI CDD -
KEGG Orthology K11838; USP7, ubiquitin carboxyl-terminal hydrolase 7
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G11910 : ubiquitin-specific protease 13,ubiquitin-specific protease 12
RAP-DB (Rice) LOC_Os01g56490.1 : ubiquitin carboxyl-terminal hydrolase, putative, expressed
MaizeGDB (Corn) Zm00025a027384
Brachypodium KQK09967 , KQK09968
Barley HORVU2Hr1G058700.32 , HORVU2Hr1G058700.33 , HORVU2Hr1G058700.30 , HORVU2Hr1G058700.31 , HORVU2Hr1G058700.34 , HORVU2Hr1G058700.2 , HORVU2Hr1G058700.3 , HORVU2Hr1G058700.1 , HORVU2Hr1G058700.6 , HORVU2Hr1G058700.7 , HORVU2Hr1G058700.4 , HORVU2Hr1G058700.5 , HORVU2Hr1G058700.8 , HORVU2Hr1G058700.9 , HORVU2Hr1G058700.10 , HORVU2Hr1G058700.11 , HORVU2Hr1G058700.12 , HORVU2Hr1G058700.13 , HORVU2Hr1G058700.14 , HORVU2Hr1G058700.15 , HORVU2Hr1G058700.16 , HORVU2Hr1G058700.17 , HORVU2Hr1G058700.18 , HORVU2Hr1G058700.19 , HORVU3Hr1G075250.4 , HORVU3Hr1G075250.5 , HORVU3Hr1G075250.1 , HORVU3Hr1G075250.2 , HORVU3Hr1G075250.3 , HORVU2Hr1G058700.25 , HORVU2Hr1G058700.24 , HORVU2Hr1G058700.27 , HORVU2Hr1G058700.26 , HORVU2Hr1G058700.21 , HORVU2Hr1G058700.23 , HORVU2Hr1G058700.22 , HORVU2Hr1G058700.29 , HORVU2Hr1G058700.28
Wheat TraesCS3D02G307100 , TraesCS3D02G307100 , TraesCS3D02G307100 , TraesCS3D02G307100 , TraesCS3D02G307100 , TraesCS3A02G295900 , TraesCS3A02G295900 , TraesCS3A02G295900 , TraesCS3A02G295900 , TraesCS3A02G295900 , TraesCS3D02G307100 , TraesCS3D02G307100 , TraesCS3A02G295900 , TraesCS3D02G307100 , TraesCS3A02G295900 , TraesCS3A02G295900 , TraesCS3D02G307100 , TraesCS3A02G295900 , TraesCS3A02G295900 , TraesCS3D02G307100 , TraesCS3A02G295900 , TraesCS3D02G307100 , TraesCS3A02G295900 , TraesCS3D02G307100 , TraesCS3D02G307100 , TraesCS3A02G295900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G219900 expressed protein -
2 Sobic.003G214600 transcriptional corepressor LEUNIG, putative, expressed -
3 Sobic.001G191700 expressed protein -
4 Sobic.004G085000 expressed protein K14310: NUP205, nuclear pore complex protein Nup205
5 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
6 Sobic.001G429600 HEAT repeat family protein, putative, expressed -
7 Sobic.002G430300 HEAT repeat family protein, putative, expressed K06100: symplekin
8 Sobic.003G152400 WD domain containing protein, putative, expressed K17601: WD repeat-containing protein 81
9 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
10 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
11 Sobic.006G083300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K18995: ATP-dependent RNA helicase DHX29
12 Sobic.004G248600 expressed protein K15166: mediator of RNA polymerase II transcription subunit 23
13 Sobic.004G309900 cold-induced protein, putative, expressed K13174: THO complex subunit 5
14 Sobic.001G355200 tRNA pseudouridine synthase family protein, putative, expressed K01855: PUS3, tRNA pseudouridine38/39 synthase
15 Sobic.010G114900 expressed protein -
16 Sobic.001G299700 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1
17 Sobic.003G062300 NF-X1-type zinc finger protein, putative, expressed K15683: NFXL1, NF-X1-type zinc finger protein NFXL1
18 Sobic.007G157000 protein transport protein, putative, expressed K14006: protein transport protein SEC23
19 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
20 Sobic.002G380200 calmodulin-binding transcription activator, putative, expressed -


Gene co-expression network
sample Sobic003G310900 Sobic003G310900 Sobic001G219900 Sobic001G219900 Sobic003G310900--Sobic001G219900 Sobic003G214600 Sobic003G214600 Sobic003G310900--Sobic003G214600 Sobic001G191700 Sobic001G191700 Sobic003G310900--Sobic001G191700 Sobic004G085000 Sobic004G085000 Sobic003G310900--Sobic004G085000 Sobic001G145400 Sobic001G145400 Sobic003G310900--Sobic001G145400 Sobic001G429600 Sobic001G429600 Sobic003G310900--Sobic001G429600 Sobic002G430300 Sobic002G430300 Sobic003G310900--Sobic002G430300 Sobic003G152400 Sobic003G152400 Sobic003G310900--Sobic003G152400 Sobic001G052400 Sobic001G052400 Sobic003G310900--Sobic001G052400 Sobic003G408600 Sobic003G408600 Sobic001G219900--Sobic003G408600 Sobic002G071500 Sobic002G071500 Sobic001G219900--Sobic002G071500 Sobic004G223600 Sobic004G223600 Sobic001G219900--Sobic004G223600 Sobic001G058700 Sobic001G058700 Sobic001G219900--Sobic001G058700 Sobic002G397500 Sobic002G397500 Sobic001G219900--Sobic002G397500 Sobic001G050600 Sobic001G050600 Sobic001G219900--Sobic001G050600 Sobic010G001100 Sobic010G001100 Sobic001G219900--Sobic010G001100 Sobic009G119000 Sobic009G119000 Sobic001G219900--Sobic009G119000 Sobic008G009700 Sobic008G009700 Sobic001G219900--Sobic008G009700 Sobic005G200800 Sobic005G200800 Sobic003G214600--Sobic005G200800 Sobic002G029100 Sobic002G029100 Sobic003G214600--Sobic002G029100 Sobic006G088200 Sobic006G088200 Sobic003G214600--Sobic006G088200 Sobic003G214600--Sobic003G408600 Sobic009G255600 Sobic009G255600 Sobic003G214600--Sobic009G255600 Sobic005G008800 Sobic005G008800 Sobic003G214600--Sobic005G008800 Sobic007G183300 Sobic007G183300 Sobic003G214600--Sobic007G183300 Sobic007G163100 Sobic007G163100 Sobic003G214600--Sobic007G163100 Sobic003G360400 Sobic003G360400 Sobic003G214600--Sobic003G360400 Sobic001G299700 Sobic001G299700 Sobic001G191700--Sobic001G299700 Sobic001G542400 Sobic001G542400 Sobic001G191700--Sobic001G542400 Sobic001G004400 Sobic001G004400 Sobic001G191700--Sobic001G004400 Sobic005G162500 Sobic005G162500 Sobic001G191700--Sobic005G162500 Sobic001G400500 Sobic001G400500 Sobic001G191700--Sobic001G400500 Sobic009G109200 Sobic009G109200 Sobic001G191700--Sobic009G109200 Sobic004G248600 Sobic004G248600 Sobic001G191700--Sobic004G248600 Sobic006G032300 Sobic006G032300 Sobic001G191700--Sobic006G032300 Sobic001G117200 Sobic001G117200 Sobic001G191700--Sobic001G117200 Sobic004G085000--Sobic001G145400 Sobic010G114900 Sobic010G114900 Sobic004G085000--Sobic010G114900 Sobic006G185200 Sobic006G185200 Sobic004G085000--Sobic006G185200 Sobic003G199300 Sobic003G199300 Sobic004G085000--Sobic003G199300 Sobic005G010900 Sobic005G010900 Sobic004G085000--Sobic005G010900 Sobic004G085000--Sobic001G219900 Sobic004G085000--Sobic002G430300 Sobic009G101200 Sobic009G101200 Sobic004G085000--Sobic009G101200 Sobic006G086600 Sobic006G086600 Sobic004G085000--Sobic006G086600 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic010G059500 Sobic010G059500 Sobic001G145400--Sobic010G059500 Sobic006G077200 Sobic006G077200 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic010G007100 Sobic010G007100 Sobic001G145400--Sobic010G007100 Sobic004G340400 Sobic004G340400 Sobic001G145400--Sobic004G340400 Sobic009G084900 Sobic009G084900 Sobic001G145400--Sobic009G084900 Sobic001G145400--Sobic004G085000 Sobic001G429600--Sobic003G199300 Sobic002G372500 Sobic002G372500 Sobic001G429600--Sobic002G372500 Sobic001G429600--Sobic009G101200 Sobic009G211200 Sobic009G211200 Sobic001G429600--Sobic009G211200 Sobic004G019200 Sobic004G019200 Sobic001G429600--Sobic004G019200 Sobic006G125900 Sobic006G125900 Sobic001G429600--Sobic006G125900 Sobic006G193300 Sobic006G193300 Sobic001G429600--Sobic006G193300 Sobic001G429600--Sobic001G052400 Sobic010G174700 Sobic010G174700 Sobic001G429600--Sobic010G174700 Sobic004G141800 Sobic004G141800 Sobic002G430300--Sobic004G141800 Sobic001G393700 Sobic001G393700 Sobic002G430300--Sobic001G393700 Sobic002G430300--Sobic003G405500 Sobic002G430300--Sobic003G152400 Sobic002G430300--Sobic001G145400 Sobic005G133800 Sobic005G133800 Sobic002G430300--Sobic005G133800 Sobic001G087600 Sobic001G087600 Sobic002G430300--Sobic001G087600 Sobic006G224800 Sobic006G224800 Sobic002G430300--Sobic006G224800 Sobic002G145800 Sobic002G145800 Sobic002G430300--Sobic002G145800 Sobic004G357100 Sobic004G357100 Sobic003G152400--Sobic004G357100 Sobic007G042400 Sobic007G042400 Sobic003G152400--Sobic007G042400 Sobic003G152400--Sobic002G430300 Sobic003G152400--Sobic004G223600 Sobic008G098300 Sobic008G098300 Sobic003G152400--Sobic008G098300 Sobic003G152400--Sobic009G084900 Sobic002G063900 Sobic002G063900 Sobic003G152400--Sobic002G063900 Sobic004G246100 Sobic004G246100 Sobic003G152400--Sobic004G246100 Sobic003G152400--Sobic001G145400 Sobic004G320500 Sobic004G320500 Sobic001G052400--Sobic004G320500 Sobic010G003400 Sobic010G003400 Sobic001G052400--Sobic010G003400 Sobic001G453400 Sobic001G453400 Sobic001G052400--Sobic001G453400 Sobic007G217100 Sobic007G217100 Sobic001G052400--Sobic007G217100 Sobic003G042400 Sobic003G042400 Sobic001G052400--Sobic003G042400 Sobic001G052400--Sobic004G340400 Sobic001G052400--Sobic006G086600 Sobic001G052400--Sobic010G174700 Sobic001G052400--Sobic006G125900
Octagon: transcription factors


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