Gene annotation
Transcriptome id Sobic.006G083300.1,Sobic.006G083300.2
Synonym Sb06g016980
Functional annotation pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed
UniProt A0A1B6PKY7 , A0A1B6PKY5
Pfam PF00270 PF00271 PF04408 PF07717
Panther DB PTHR18934 PTHR18934:SF145
NCBI CDD -
KEGG Orthology K18995; ATP-dependent RNA helicase DHX29
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding GO:0004386helicase activity


Orthologs (automatic annotation)
TAIR AT1G58060 : RNA helicase family protein
RAP-DB (Rice) LOC_Os04g35260.1 : DEAD/DEAH box helicase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a011354
Brachypodium KQJ82662
Barley HORVU2Hr1G075590.6 , HORVU2Hr1G075590.7 , HORVU2Hr1G075590.4 , HORVU2Hr1G075590.8 , HORVU2Hr1G075590.9
Wheat TraesCS2D02G302700 , TraesCS2D02G302700 , TraesCS2B02G320800 , TraesCS2B02G320800 , TraesCS2B02G320800 , TraesCS2B02G320800 , TraesCS2B02G320800 , TraesCS2A02G304100 , TraesCS2A02G304100 , TraesCS2A02G304100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
2 Sobic.004G248600 expressed protein K15166: mediator of RNA polymerase II transcription subunit 23
3 Sobic.001G004400 - K14290: XPO1, exportin-1
4 Sobic.007G098500 BIG, putative, expressed K10691: UBR4, E3 ubiquitin-protein ligase UBR4
5 Sobic.001G110600 HEAT repeat family protein, putative, expressed -
6 Sobic.001G050600 expressed protein -
7 Sobic.002G396500 FAT domain-containing protein, putative, expressed K08874: transformation/transcription domain-associated protein
8 Sobic.001G214600 expressed protein -
9 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
10 Sobic.008G132900 expressed protein -
11 Sobic.001G219900 expressed protein -
12 Sobic.004G260100 tetratricopeptide repeat, putative, expressed K03255: TIF31, protein TIF31
13 Sobic.010G094700 aberrant root formation protein 4, putative, expressed -
14 Sobic.001G137000 aberrant pollen transmission 1, putative, expressed -
15 Sobic.003G312100 guanine nucleotide exchange family protein, putative, expressed -
16 Sobic.001G058200 PPR repeat domain containing protein, putative, expressed -
17 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
18 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
19 Sobic.010G174700 expressed protein -
20 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -


Gene co-expression network
sample Sobic006G083300 Sobic006G083300 Sobic009G109200 Sobic009G109200 Sobic006G083300--Sobic009G109200 Sobic004G248600 Sobic004G248600 Sobic006G083300--Sobic004G248600 Sobic001G004400 Sobic001G004400 Sobic006G083300--Sobic001G004400 Sobic007G098500 Sobic007G098500 Sobic006G083300--Sobic007G098500 Sobic001G110600 Sobic001G110600 Sobic006G083300--Sobic001G110600 Sobic001G050600 Sobic001G050600 Sobic006G083300--Sobic001G050600 Sobic002G396500 Sobic002G396500 Sobic006G083300--Sobic002G396500 Sobic001G214600 Sobic001G214600 Sobic006G083300--Sobic001G214600 Sobic001G352900 Sobic001G352900 Sobic006G083300--Sobic001G352900 Sobic010G105200 Sobic010G105200 Sobic009G109200--Sobic010G105200 Sobic004G242400 Sobic004G242400 Sobic009G109200--Sobic004G242400 Sobic002G397500 Sobic002G397500 Sobic009G109200--Sobic002G397500 Sobic001G542400 Sobic001G542400 Sobic009G109200--Sobic001G542400 Sobic001G540400 Sobic001G540400 Sobic009G109200--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic009G109200--Sobic005G008800 Sobic004G276400 Sobic004G276400 Sobic009G109200--Sobic004G276400 Sobic003G408600 Sobic003G408600 Sobic009G109200--Sobic003G408600 Sobic010G112100 Sobic010G112100 Sobic009G109200--Sobic010G112100 Sobic004G248600--Sobic009G109200 Sobic004G248600--Sobic001G004400 Sobic002G133300 Sobic002G133300 Sobic004G248600--Sobic002G133300 Sobic003G072200 Sobic003G072200 Sobic004G248600--Sobic003G072200 Sobic003G312100 Sobic003G312100 Sobic004G248600--Sobic003G312100 Sobic003G186000 Sobic003G186000 Sobic004G248600--Sobic003G186000 Sobic004G248600--Sobic004G276400 Sobic004G248600--Sobic002G397500 Sobic005G162500 Sobic005G162500 Sobic004G248600--Sobic005G162500 Sobic001G004400--Sobic002G133300 Sobic001G004400--Sobic001G110600 Sobic007G054800 Sobic007G054800 Sobic001G004400--Sobic007G054800 Sobic001G004400--Sobic004G248600 Sobic001G004400--Sobic003G312100 Sobic001G493700 Sobic001G493700 Sobic001G004400--Sobic001G493700 Sobic003G221400 Sobic003G221400 Sobic001G004400--Sobic003G221400 Sobic001G004400--Sobic004G276400 Sobic002G179400 Sobic002G179400 Sobic001G004400--Sobic002G179400 Sobic008G092600 Sobic008G092600 Sobic007G098500--Sobic008G092600 Sobic007G098500--Sobic002G396500 Sobic007G098500--Sobic010G105200 Sobic007G098500--Sobic003G072200 Sobic007G098500--Sobic001G050600 Sobic001G137000 Sobic001G137000 Sobic007G098500--Sobic001G137000 Sobic003G233400 Sobic003G233400 Sobic007G098500--Sobic003G233400 Sobic001G287500 Sobic001G287500 Sobic007G098500--Sobic001G287500 Sobic006G265200 Sobic006G265200 Sobic007G098500--Sobic006G265200 Sobic001G110600--Sobic007G054800 Sobic001G110600--Sobic001G004400 Sobic001G110600--Sobic003G221400 Sobic001G110600--Sobic001G493700 Sobic001G191700 Sobic001G191700 Sobic001G110600--Sobic001G191700 Sobic001G110600--Sobic005G162500 Sobic001G110600--Sobic003G233400 Sobic008G085300 Sobic008G085300 Sobic001G110600--Sobic008G085300 Sobic001G110600--Sobic001G287500 Sobic001G050600--Sobic007G098500 Sobic001G037100 Sobic001G037100 Sobic001G050600--Sobic001G037100 Sobic001G058700 Sobic001G058700 Sobic001G050600--Sobic001G058700 Sobic001G219900 Sobic001G219900 Sobic001G050600--Sobic001G219900 Sobic007G172400 Sobic007G172400 Sobic001G050600--Sobic007G172400 Sobic001G050600--Sobic001G137000 Sobic001G280900 Sobic001G280900 Sobic001G050600--Sobic001G280900 Sobic001G050600--Sobic008G092600 Sobic003G259100 Sobic003G259100 Sobic001G050600--Sobic003G259100 Sobic002G396500--Sobic007G098500 Sobic010G001100 Sobic010G001100 Sobic002G396500--Sobic010G001100 Sobic002G396500--Sobic010G105200 Sobic002G396500--Sobic003G072200 Sobic002G396500--Sobic008G092600 Sobic002G396500--Sobic001G137000 Sobic002G396500--Sobic003G233400 Sobic002G396500--Sobic003G312100 Sobic002G396500--Sobic009G109200 Sobic004G260100 Sobic004G260100 Sobic001G214600--Sobic004G260100 Sobic009G247400 Sobic009G247400 Sobic001G214600--Sobic009G247400 Sobic009G084900 Sobic009G084900 Sobic001G214600--Sobic009G084900 Sobic010G147833 Sobic010G147833 Sobic001G214600--Sobic010G147833 Sobic002G317200 Sobic002G317200 Sobic001G214600--Sobic002G317200 Sobic004G223600 Sobic004G223600 Sobic001G214600--Sobic004G223600 Sobic006G234700 Sobic006G234700 Sobic001G214600--Sobic006G234700 Sobic001G214600--Sobic001G219900 Sobic001G493200 Sobic001G493200 Sobic001G214600--Sobic001G493200 Sobic010G053600 Sobic010G053600 Sobic001G352900--Sobic010G053600 Sobic002G391600 Sobic002G391600 Sobic001G352900--Sobic002G391600 Sobic001G352900--Sobic004G242400 Sobic001G352900--Sobic010G001100 Sobic001G352900--Sobic009G109200 Sobic001G352900--Sobic002G317200 Sobic001G352900--Sobic002G397500 Sobic001G219600 Sobic001G219600 Sobic001G352900--Sobic001G219600 Sobic003G293200 Sobic003G293200 Sobic001G352900--Sobic003G293200
Octagon: transcription factors


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