Gene annotation
Transcriptome id Sobic.003G312100.3,Sobic.003G312100.4,Sobic.003G312100.2
Synonym
Functional annotation guanine nucleotide exchange family protein, putative, expressed
UniProt A0A1W0VZU1 , A0A1W0VZT2 , A0A1W0VZT1
Pfam PF09324 PF12783 PF16213 PF16206 PF16213 PF09324 PF12783 PF16206 PF09324 PF16213 PF12783 PF16206
Panther DB PTHR10663 PTHR10663:SF114
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0015031; protein transport


Orthologs (automatic annotation)
TAIR AT5G27970 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os01g56590.1 : guanine nucleotide exchange family protein, putative, expressed
MaizeGDB (Corn) Zm00025a027370 , Zm00025a027361
Brachypodium KQK09984 , PNT72948 , PNT72949 , PNT72947
Barley HORVU3Hr1G075550.31 , HORVU3Hr1G075550.30 , HORVU3Hr1G075550.33 , HORVU3Hr1G075550.32 , HORVU3Hr1G075550.35 , HORVU3Hr1G075550.34 , HORVU3Hr1G075550.37 , HORVU3Hr1G075550.36 , HORVU3Hr1G075550.39 , HORVU3Hr1G075550.38 , HORVU3Hr1G075550.26 , HORVU3Hr1G075550.27 , HORVU3Hr1G075550.24 , HORVU3Hr1G075550.25 , HORVU3Hr1G075550.22 , HORVU3Hr1G075550.23 , HORVU3Hr1G075550.20 , HORVU3Hr1G075550.21 , HORVU3Hr1G075550.28 , HORVU3Hr1G075550.29 , HORVU0Hr1G006940.1 , HORVU0Hr1G006940.2 , HORVU3Hr1G075550.7 , HORVU3Hr1G075550.6 , HORVU3Hr1G075550.5 , HORVU3Hr1G075550.4 , HORVU3Hr1G075550.2 , HORVU3Hr1G075550.9 , HORVU3Hr1G075550.8 , HORVU3Hr1G075550.53 , HORVU3Hr1G075550.52 , HORVU3Hr1G075550.51 , HORVU3Hr1G075550.50 , HORVU3Hr1G075550.57 , HORVU3Hr1G075550.56 , HORVU3Hr1G075550.55 , HORVU3Hr1G075550.54 , HORVU3Hr1G075550.58 , HORVU3Hr1G075550.41 , HORVU3Hr1G075550.42 , HORVU3Hr1G075550.43 , HORVU3Hr1G075550.44 , HORVU3Hr1G075550.45 , HORVU3Hr1G075550.46 , HORVU3Hr1G075550.47 , HORVU3Hr1G075550.48 , HORVU3Hr1G075550.49 , HORVU0Hr1G007020.1 , HORVU3Hr1G075550.60 , HORVU3Hr1G075550.61 , HORVU0Hr1G006980.1 , HORVU0Hr1G007000.2 , HORVU0Hr1G007000.1 , HORVU3Hr1G075550.13 , HORVU3Hr1G075550.19 , HORVU3Hr1G075550.18 , HORVU3Hr1G075550.17 , HORVU3Hr1G075550.16 , HORVU3Hr1G075550.15 , HORVU3Hr1G075550.14 , HORVU3Hr1G075550.12 , HORVU3Hr1G075550.11 , HORVU3Hr1G075550.10
Wheat TraesCS3B02G342700 , TraesCS3B02G342700 , TraesCS3B02G342700 , TraesCS3B02G342700 , TraesCS3B02G342700 , TraesCS3B02G342700 , TraesCS3A02G323000 , TraesCS3A02G323000 , TraesCS3A02G323000 , TraesCS3D02G308500
Populus PNT06517 , PNT06516


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G148932 - -
2 Sobic.003G233400 expressed protein -
3 Sobic.001G137000 aberrant pollen transmission 1, putative, expressed -
4 Sobic.007G019300 adaptin, putative, expressed K12397: AP-3 complex subunit beta
5 Sobic.003G072200 zinc finger protein, putative, expressed K11978: E3 ubiquitin-protein ligase UBR3
6 Sobic.002G397500 SAC3/GANP family protein, expressed -
7 Sobic.001G004400 - K14290: XPO1, exportin-1
8 Sobic.004G248600 expressed protein K15166: mediator of RNA polymerase II transcription subunit 23
9 Sobic.002G396500 FAT domain-containing protein, putative, expressed K08874: transformation/transcription domain-associated protein
10 Sobic.007G098500 BIG, putative, expressed K10691: UBR4, E3 ubiquitin-protein ligase UBR4
11 Sobic.007G077900 zinc finger domain, LSD1 subclass family protein, expressed -
12 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
13 Sobic.004G319900 expressed protein K05310: PIGG, ethanolamine phosphate transferase 2 subunit G
14 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
15 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
16 Sobic.009G084900 expressed protein -
17 Sobic.009G131300 cation-transporting ATPase, putative, expressed K14950: ATP13A1, manganese-transporting P-type ATPase
18 Sobic.002G179400 DNA binding protein, putative, expressed -
19 Sobic.002G429300 importin subunit beta, putative, expressed -
20 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -


Gene co-expression network
sample Sobic003G312100 Sobic003G312100 Sobic010G148932 Sobic010G148932 Sobic003G312100--Sobic010G148932 Sobic003G233400 Sobic003G233400 Sobic003G312100--Sobic003G233400 Sobic001G137000 Sobic001G137000 Sobic003G312100--Sobic001G137000 Sobic007G019300 Sobic007G019300 Sobic003G312100--Sobic007G019300 Sobic003G072200 Sobic003G072200 Sobic003G312100--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic003G312100--Sobic002G397500 Sobic001G004400 Sobic001G004400 Sobic003G312100--Sobic001G004400 Sobic004G248600 Sobic004G248600 Sobic003G312100--Sobic004G248600 Sobic002G396500 Sobic002G396500 Sobic003G312100--Sobic002G396500 Sobic010G148932--Sobic003G312100 Sobic002G042600 Sobic002G042600 Sobic010G148932--Sobic002G042600 Sobic003G229500 Sobic003G229500 Sobic010G148932--Sobic003G229500 Sobic010G148932--Sobic002G397500 Sobic008G098900 Sobic008G098900 Sobic010G148932--Sobic008G098900 Sobic001G117200 Sobic001G117200 Sobic010G148932--Sobic001G117200 Sobic010G148932--Sobic001G137000 Sobic007G062800 Sobic007G062800 Sobic010G148932--Sobic007G062800 Sobic001G457900 Sobic001G457900 Sobic010G148932--Sobic001G457900 Sobic001G287500 Sobic001G287500 Sobic003G233400--Sobic001G287500 Sobic003G233400--Sobic003G072200 Sobic007G098500 Sobic007G098500 Sobic003G233400--Sobic007G098500 Sobic003G233400--Sobic001G137000 Sobic003G233400--Sobic003G312100 Sobic008G092600 Sobic008G092600 Sobic003G233400--Sobic008G092600 Sobic003G233400--Sobic002G396500 Sobic002G179400 Sobic002G179400 Sobic003G233400--Sobic002G179400 Sobic004G051200 Sobic004G051200 Sobic003G233400--Sobic004G051200 Sobic001G137000--Sobic008G092600 Sobic001G137000--Sobic007G098500 Sobic001G137000--Sobic003G233400 Sobic001G137000--Sobic003G312100 Sobic001G137000--Sobic001G117200 Sobic001G137000--Sobic002G396500 Sobic001G050600 Sobic001G050600 Sobic001G137000--Sobic001G050600 Sobic001G137000--Sobic008G098900 Sobic008G099800 Sobic008G099800 Sobic001G137000--Sobic008G099800 Sobic007G019300--Sobic003G312100 Sobic008G124800 Sobic008G124800 Sobic007G019300--Sobic008G124800 Sobic007G019300--Sobic003G233400 Sobic001G426600 Sobic001G426600 Sobic007G019300--Sobic001G426600 Sobic003G314700 Sobic003G314700 Sobic007G019300--Sobic003G314700 Sobic001G170100 Sobic001G170100 Sobic007G019300--Sobic001G170100 Sobic010G147833 Sobic010G147833 Sobic007G019300--Sobic010G147833 Sobic004G260100 Sobic004G260100 Sobic007G019300--Sobic004G260100 Sobic009G084900 Sobic009G084900 Sobic007G019300--Sobic009G084900 Sobic003G072200--Sobic002G397500 Sobic003G072200--Sobic007G098500 Sobic003G072200--Sobic007G062800 Sobic003G072200--Sobic003G233400 Sobic003G072200--Sobic009G084900 Sobic003G072200--Sobic008G098900 Sobic005G112300 Sobic005G112300 Sobic003G072200--Sobic005G112300 Sobic001G347500 Sobic001G347500 Sobic003G072200--Sobic001G347500 Sobic002G133300 Sobic002G133300 Sobic003G072200--Sobic002G133300 Sobic003G408600 Sobic003G408600 Sobic002G397500--Sobic003G408600 Sobic002G397500--Sobic007G062800 Sobic002G397500--Sobic005G112300 Sobic001G540400 Sobic001G540400 Sobic002G397500--Sobic001G540400 Sobic009G109200 Sobic009G109200 Sobic002G397500--Sobic009G109200 Sobic002G397500--Sobic003G072200 Sobic004G242400 Sobic004G242400 Sobic002G397500--Sobic004G242400 Sobic004G276400 Sobic004G276400 Sobic002G397500--Sobic004G276400 Sobic010G112100 Sobic010G112100 Sobic002G397500--Sobic010G112100 Sobic001G004400--Sobic002G133300 Sobic001G110600 Sobic001G110600 Sobic001G004400--Sobic001G110600 Sobic007G054800 Sobic007G054800 Sobic001G004400--Sobic007G054800 Sobic001G004400--Sobic004G248600 Sobic001G004400--Sobic003G312100 Sobic001G493700 Sobic001G493700 Sobic001G004400--Sobic001G493700 Sobic003G221400 Sobic003G221400 Sobic001G004400--Sobic003G221400 Sobic001G004400--Sobic004G276400 Sobic001G004400--Sobic002G179400 Sobic004G248600--Sobic009G109200 Sobic004G248600--Sobic001G004400 Sobic004G248600--Sobic002G133300 Sobic004G248600--Sobic003G072200 Sobic004G248600--Sobic003G312100 Sobic003G186000 Sobic003G186000 Sobic004G248600--Sobic003G186000 Sobic004G248600--Sobic004G276400 Sobic004G248600--Sobic002G397500 Sobic005G162500 Sobic005G162500 Sobic004G248600--Sobic005G162500 Sobic002G396500--Sobic007G098500 Sobic010G001100 Sobic010G001100 Sobic002G396500--Sobic010G001100 Sobic010G105200 Sobic010G105200 Sobic002G396500--Sobic010G105200 Sobic002G396500--Sobic003G072200 Sobic002G396500--Sobic008G092600 Sobic002G396500--Sobic001G137000 Sobic002G396500--Sobic003G233400 Sobic002G396500--Sobic003G312100 Sobic002G396500--Sobic009G109200
Octagon: transcription factors


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