Gene annotation
Transcriptome id Sobic.007G019300.1
Synonym PAT2, Sb07g001660
Functional annotation adaptin, putative, expressed
UniProt C5YMD0
Pfam PF01602
Panther DB PTHR11134 PTHR11134:SF1
NCBI CDD -
KEGG Orthology K12397; AP-3 complex subunit beta
Gene Ontology GO:0016192; vesicle-mediated transport GO:0006886intracellular protein transport


Orthologs (automatic annotation)
TAIR AT3G55480 : protein affected trafficking 2
RAP-DB (Rice) LOC_Os01g74180.1 : adaptin, putative, expressed
MaizeGDB (Corn) Zm00025a040284
Brachypodium KQK11775 , KQK11774
Barley HORVU3Hr1G115880.3 , HORVU3Hr1G115880.4 , HORVU3Hr1G115880.5 , HORVU3Hr1G115880.6 , HORVU3Hr1G115880.7 , HORVU3Hr1G115880.1 , HORVU3Hr1G115880.2
Wheat TraesCS3D02G535400 , TraesCS3B02G599600 , TraesCS3B02G599600 , TraesCS3A02G530000 , TraesCS3B02G599600 , TraesCS3B02G600100 , TraesCS3B02G599800
Populus -


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cDNA sequences
Sobic.007G019300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G312100 guanine nucleotide exchange family protein, putative, expressed -
2 Sobic.008G124800 expressed protein -
3 Sobic.003G233400 expressed protein -
4 Sobic.001G426600 SH3 domain containing protein, expressed -
5 Sobic.003G314700 expressed protein -
6 Sobic.001G170100 WD domain, G-beta repeat domain containing protein, expressed -
7 Sobic.010G147833 - -
8 Sobic.004G260100 tetratricopeptide repeat, putative, expressed K03255: TIF31, protein TIF31
9 Sobic.009G084900 expressed protein -
10 Sobic.001G457900 expressed protein -
11 Sobic.001G004400 - K14290: XPO1, exportin-1
12 Sobic.002G397500 SAC3/GANP family protein, expressed -
13 Sobic.002G179400 DNA binding protein, putative, expressed -
14 Sobic.004G248600 expressed protein K15166: mediator of RNA polymerase II transcription subunit 23
15 Sobic.002G308500 peptide-Nasparagine amidase, putative, expressed K01456: E3.5.1.52, NGLY1, peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase
16 Sobic.001G214600 expressed protein -
17 Sobic.006G261400 peptidase, trypsin-like serine and cysteine proteases, putative, expressed -
18 Sobic.003G072200 zinc finger protein, putative, expressed K11978: E3 ubiquitin-protein ligase UBR3
19 Sobic.004G256500 WD domain, G-beta repeat domain containing protein, expressed K12616: enhancer of mRNA-decapping protein 4
20 Sobic.001G287500 heat shock protein DnaJ, putative, expressed K09533: DnaJ homolog subfamily C member 13


Gene co-expression network
sample Sobic007G019300 Sobic007G019300 Sobic003G312100 Sobic003G312100 Sobic007G019300--Sobic003G312100 Sobic008G124800 Sobic008G124800 Sobic007G019300--Sobic008G124800 Sobic003G233400 Sobic003G233400 Sobic007G019300--Sobic003G233400 Sobic001G426600 Sobic001G426600 Sobic007G019300--Sobic001G426600 Sobic003G314700 Sobic003G314700 Sobic007G019300--Sobic003G314700 Sobic001G170100 Sobic001G170100 Sobic007G019300--Sobic001G170100 Sobic010G147833 Sobic010G147833 Sobic007G019300--Sobic010G147833 Sobic004G260100 Sobic004G260100 Sobic007G019300--Sobic004G260100 Sobic009G084900 Sobic009G084900 Sobic007G019300--Sobic009G084900 Sobic010G148932 Sobic010G148932 Sobic003G312100--Sobic010G148932 Sobic003G312100--Sobic003G233400 Sobic001G137000 Sobic001G137000 Sobic003G312100--Sobic001G137000 Sobic003G312100--Sobic007G019300 Sobic003G072200 Sobic003G072200 Sobic003G312100--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic003G312100--Sobic002G397500 Sobic001G004400 Sobic001G004400 Sobic003G312100--Sobic001G004400 Sobic004G248600 Sobic004G248600 Sobic003G312100--Sobic004G248600 Sobic002G396500 Sobic002G396500 Sobic003G312100--Sobic002G396500 Sobic002G340900 Sobic002G340900 Sobic008G124800--Sobic002G340900 Sobic006G021700 Sobic006G021700 Sobic008G124800--Sobic006G021700 Sobic008G124800--Sobic007G019300 Sobic004G322400 Sobic004G322400 Sobic008G124800--Sobic004G322400 Sobic001G404600 Sobic001G404600 Sobic008G124800--Sobic001G404600 Sobic008G124800--Sobic003G233400 Sobic002G308500 Sobic002G308500 Sobic008G124800--Sobic002G308500 Sobic003G405500 Sobic003G405500 Sobic008G124800--Sobic003G405500 Sobic002G401500 Sobic002G401500 Sobic008G124800--Sobic002G401500 Sobic001G287500 Sobic001G287500 Sobic003G233400--Sobic001G287500 Sobic003G233400--Sobic003G072200 Sobic007G098500 Sobic007G098500 Sobic003G233400--Sobic007G098500 Sobic003G233400--Sobic001G137000 Sobic003G233400--Sobic003G312100 Sobic008G092600 Sobic008G092600 Sobic003G233400--Sobic008G092600 Sobic003G233400--Sobic002G396500 Sobic002G179400 Sobic002G179400 Sobic003G233400--Sobic002G179400 Sobic004G051200 Sobic004G051200 Sobic003G233400--Sobic004G051200 Sobic001G534800 Sobic001G534800 Sobic001G426600--Sobic001G534800 Sobic001G426600--Sobic001G170100 Sobic009G049400 Sobic009G049400 Sobic001G426600--Sobic009G049400 Sobic001G369000 Sobic001G369000 Sobic001G426600--Sobic001G369000 Sobic010G275500 Sobic010G275500 Sobic001G426600--Sobic010G275500 Sobic001G426600--Sobic001G287500 Sobic001G426600--Sobic007G019300 Sobic004G039600 Sobic004G039600 Sobic001G426600--Sobic004G039600 Sobic001G426600--Sobic004G051200 Sobic003G029600 Sobic003G029600 Sobic003G314700--Sobic003G029600 Sobic003G314700--Sobic008G124800 Sobic001G437400 Sobic001G437400 Sobic003G314700--Sobic001G437400 Sobic003G240700 Sobic003G240700 Sobic003G314700--Sobic003G240700 Sobic003G314700--Sobic003G405500 Sobic003G314700--Sobic007G019300 Sobic004G204100 Sobic004G204100 Sobic003G314700--Sobic004G204100 Sobic003G314700--Sobic001G426600 Sobic002G412700 Sobic002G412700 Sobic003G314700--Sobic002G412700 Sobic006G138000 Sobic006G138000 Sobic001G170100--Sobic006G138000 Sobic001G518400 Sobic001G518400 Sobic001G170100--Sobic001G518400 Sobic001G170100--Sobic001G426600 Sobic001G335900 Sobic001G335900 Sobic001G170100--Sobic001G335900 Sobic001G170100--Sobic001G369000 Sobic001G170100--Sobic010G275500 Sobic001G170100--Sobic003G240700 Sobic001G170100--Sobic010G147833 Sobic001G170100--Sobic007G019300 Sobic001G214600 Sobic001G214600 Sobic010G147833--Sobic001G214600 Sobic010G147833--Sobic004G260100 Sobic010G147833--Sobic001G170100 Sobic010G147833--Sobic007G019300 Sobic010G147833--Sobic001G426600 Sobic003G057700 Sobic003G057700 Sobic010G147833--Sobic003G057700 Sobic003G249600 Sobic003G249600 Sobic010G147833--Sobic003G249600 Sobic007G120500 Sobic007G120500 Sobic010G147833--Sobic007G120500 Sobic010G147833--Sobic001G287500 Sobic004G260100--Sobic001G214600 Sobic004G260100--Sobic009G084900 Sobic004G260100--Sobic002G397500 Sobic001G089600 Sobic001G089600 Sobic004G260100--Sobic001G089600 Sobic001G493200 Sobic001G493200 Sobic004G260100--Sobic001G493200 Sobic001G334700 Sobic001G334700 Sobic004G260100--Sobic001G334700 Sobic004G260100--Sobic010G147833 Sobic004G023100 Sobic004G023100 Sobic004G260100--Sobic004G023100 Sobic010G053600 Sobic010G053600 Sobic004G260100--Sobic010G053600 Sobic010G059500 Sobic010G059500 Sobic009G084900--Sobic010G059500 Sobic009G084900--Sobic003G072200 Sobic009G084900--Sobic001G493200 Sobic001G433800 Sobic001G433800 Sobic009G084900--Sobic001G433800 Sobic009G131300 Sobic009G131300 Sobic009G084900--Sobic009G131300 Sobic002G133300 Sobic002G133300 Sobic009G084900--Sobic002G133300 Sobic006G077200 Sobic006G077200 Sobic009G084900--Sobic006G077200 Sobic008G082500 Sobic008G082500 Sobic009G084900--Sobic008G082500 Sobic009G084900--Sobic004G260100
Octagon: transcription factors


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