Gene annotation
Transcriptome id Sobic.003G314700.1
Synonym Sb03g036240
Functional annotation expressed protein
UniProt C5XLM8
Pfam PF08700
Panther DB PTHR31658 PTHR31658:SF0
NCBI CDD KOG2033; Low density lipoprotein B-like protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G16300 : Vps51/Vps67 family (components of vesicular transport) protein
RAP-DB (Rice) LOC_Os01g56910.1 : expressed protein
MaizeGDB (Corn) Zm00025a039903 , Zm00025a027328
Brachypodium KQK10035
Barley HORVU3Hr1G076220.3 , HORVU3Hr1G076220.4 , HORVU3Hr1G076220.5 , HORVU3Hr1G076220.1
Wheat TraesCS3B02G346400 , TraesCS3B02G346400 , TraesCS3B02G346400 , TraesCS3D02G311800 , TraesCS3A02G319900 , TraesCS3A02G319900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G029600 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
2 Sobic.008G124800 expressed protein -
3 Sobic.001G437400 guanine nucleotide exchange family protein, putative, expressed K18442: ARFGEF, brefeldin A-inhibited guanine nucleotide-exchange protein
4 Sobic.003G240700 peptidase S8 and S53, subtilisin, kexin, sedolisin, putative, expressed -
5 Sobic.003G405500 mannosyl-oligosaccharide glucosidase, putative, expressed K01228: mannosyl-oligosaccharide glucosidase
6 Sobic.007G019300 adaptin, putative, expressed K12397: AP-3 complex subunit beta
7 Sobic.004G204100 expressed protein -
8 Sobic.001G426600 SH3 domain containing protein, expressed -
9 Sobic.002G412700 histone-arginine methyltransferase CARM1, putative, expressed K05931: CARM1, type I protein arginine methyltransferase
10 Sobic.010G139500 phospholipid-transporting ATPase, putative, expressed K01530: phospholipid-translocating ATPase
11 Sobic.001G117800 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
12 Sobic.010G000800 PHD-finger domain containing protein, expressed -
13 Sobic.003G334700 HEAT, putative, expressed K16803: CKAP5, cytoskeleton-associated protein 5
14 Sobic.001G170100 WD domain, G-beta repeat domain containing protein, expressed -
15 Sobic.009G120500 golgi transport complex protein-related, putative, expressed -
16 Sobic.007G145400 expressed protein -
17 Sobic.001G090100 SRPK4, putative, expressed K08832: SRPK3, serine/threonine-protein kinase SRPK3
18 Sobic.008G157200 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
19 Sobic.006G077200 ubiquitin interaction motif-containing protein, putative, expressed -
20 Sobic.003G249600 vacuolar protein sorting-associated protein 16, putative, expressed -


Gene co-expression network
sample Sobic003G314700 Sobic003G314700 Sobic003G029600 Sobic003G029600 Sobic003G314700--Sobic003G029600 Sobic008G124800 Sobic008G124800 Sobic003G314700--Sobic008G124800 Sobic001G437400 Sobic001G437400 Sobic003G314700--Sobic001G437400 Sobic003G240700 Sobic003G240700 Sobic003G314700--Sobic003G240700 Sobic003G405500 Sobic003G405500 Sobic003G314700--Sobic003G405500 Sobic007G019300 Sobic007G019300 Sobic003G314700--Sobic007G019300 Sobic004G204100 Sobic004G204100 Sobic003G314700--Sobic004G204100 Sobic001G426600 Sobic001G426600 Sobic003G314700--Sobic001G426600 Sobic002G412700 Sobic002G412700 Sobic003G314700--Sobic002G412700 Sobic001G117800 Sobic001G117800 Sobic003G029600--Sobic001G117800 Sobic003G029600--Sobic003G314700 Sobic002G070600 Sobic002G070600 Sobic003G029600--Sobic002G070600 Sobic002G340900 Sobic002G340900 Sobic003G029600--Sobic002G340900 Sobic001G301200 Sobic001G301200 Sobic003G029600--Sobic001G301200 Sobic001G449900 Sobic001G449900 Sobic003G029600--Sobic001G449900 Sobic003G029600--Sobic008G124800 Sobic009G118900 Sobic009G118900 Sobic003G029600--Sobic009G118900 Sobic003G029600--Sobic001G437400 Sobic008G124800--Sobic002G340900 Sobic006G021700 Sobic006G021700 Sobic008G124800--Sobic006G021700 Sobic008G124800--Sobic007G019300 Sobic004G322400 Sobic004G322400 Sobic008G124800--Sobic004G322400 Sobic001G404600 Sobic001G404600 Sobic008G124800--Sobic001G404600 Sobic003G233400 Sobic003G233400 Sobic008G124800--Sobic003G233400 Sobic002G308500 Sobic002G308500 Sobic008G124800--Sobic002G308500 Sobic008G124800--Sobic003G405500 Sobic002G401500 Sobic002G401500 Sobic008G124800--Sobic002G401500 Sobic001G437400--Sobic002G340900 Sobic001G437400--Sobic003G314700 Sobic003G250900 Sobic003G250900 Sobic001G437400--Sobic003G250900 Sobic001G437400--Sobic009G118900 Sobic001G437400--Sobic003G029600 Sobic001G437400--Sobic001G117800 Sobic003G334700 Sobic003G334700 Sobic001G437400--Sobic003G334700 Sobic001G437400--Sobic008G124800 Sobic001G437400--Sobic007G019300 Sobic001G369000 Sobic001G369000 Sobic003G240700--Sobic001G369000 Sobic001G335900 Sobic001G335900 Sobic003G240700--Sobic001G335900 Sobic001G170100 Sobic001G170100 Sobic003G240700--Sobic001G170100 Sobic006G138000 Sobic006G138000 Sobic003G240700--Sobic006G138000 Sobic003G240700--Sobic003G314700 Sobic003G293000 Sobic003G293000 Sobic003G240700--Sobic003G293000 Sobic009G049400 Sobic009G049400 Sobic003G240700--Sobic009G049400 Sobic003G240700--Sobic001G426600 Sobic003G227100 Sobic003G227100 Sobic003G240700--Sobic003G227100 Sobic001G145400 Sobic001G145400 Sobic003G405500--Sobic001G145400 Sobic003G405500--Sobic008G124800 Sobic002G430300 Sobic002G430300 Sobic003G405500--Sobic002G430300 Sobic009G084900 Sobic009G084900 Sobic003G405500--Sobic009G084900 Sobic006G166200 Sobic006G166200 Sobic003G405500--Sobic006G166200 Sobic004G141800 Sobic004G141800 Sobic003G405500--Sobic004G141800 Sobic006G077200 Sobic006G077200 Sobic003G405500--Sobic006G077200 Sobic010G059500 Sobic010G059500 Sobic003G405500--Sobic010G059500 Sobic003G405500--Sobic003G314700 Sobic003G312100 Sobic003G312100 Sobic007G019300--Sobic003G312100 Sobic007G019300--Sobic008G124800 Sobic007G019300--Sobic003G233400 Sobic007G019300--Sobic001G426600 Sobic007G019300--Sobic003G314700 Sobic007G019300--Sobic001G170100 Sobic010G147833 Sobic010G147833 Sobic007G019300--Sobic010G147833 Sobic004G260100 Sobic004G260100 Sobic007G019300--Sobic004G260100 Sobic007G019300--Sobic009G084900 Sobic010G223100 Sobic010G223100 Sobic004G204100--Sobic010G223100 Sobic010G139500 Sobic010G139500 Sobic004G204100--Sobic010G139500 Sobic001G287500 Sobic001G287500 Sobic004G204100--Sobic001G287500 Sobic004G204100--Sobic003G233400 Sobic004G023100 Sobic004G023100 Sobic004G204100--Sobic004G023100 Sobic004G204100--Sobic003G314700 Sobic002G179400 Sobic002G179400 Sobic004G204100--Sobic002G179400 Sobic004G040500 Sobic004G040500 Sobic004G204100--Sobic004G040500 Sobic003G163200 Sobic003G163200 Sobic004G204100--Sobic003G163200 Sobic001G534800 Sobic001G534800 Sobic001G426600--Sobic001G534800 Sobic001G426600--Sobic001G170100 Sobic001G426600--Sobic009G049400 Sobic001G426600--Sobic001G369000 Sobic010G275500 Sobic010G275500 Sobic001G426600--Sobic010G275500 Sobic001G426600--Sobic001G287500 Sobic001G426600--Sobic007G019300 Sobic004G039600 Sobic004G039600 Sobic001G426600--Sobic004G039600 Sobic004G051200 Sobic004G051200 Sobic001G426600--Sobic004G051200 Sobic001G248100 Sobic001G248100 Sobic002G412700--Sobic001G248100 Sobic002G412700--Sobic003G405500 Sobic002G412700--Sobic003G314700 Sobic004G034700 Sobic004G034700 Sobic002G412700--Sobic004G034700 Sobic003G209400 Sobic003G209400 Sobic002G412700--Sobic003G209400 Sobic007G047600 Sobic007G047600 Sobic002G412700--Sobic007G047600 Sobic010G085200 Sobic010G085200 Sobic002G412700--Sobic010G085200 Sobic002G119600 Sobic002G119600 Sobic002G412700--Sobic002G119600 Sobic002G412700--Sobic010G139500
Octagon: transcription factors


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