Gene annotation
Transcriptome id Sobic.004G204100.1
Synonym Sb04g025040
Functional annotation expressed protein
UniProt C5XX45
Pfam -
Panther DB PTHR18937 PTHR18937:SF272
NCBI CDD KOG0978; E3 ubiquitin ligase involved in syntaxin degradation KOG4593Mitotic checkpoint protein MAD1
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G24460 : -
RAP-DB (Rice) LOC_Os02g38480.1 : expressed protein
MaizeGDB (Corn) Zm00025a021290
Brachypodium KQK00188
Barley HORVU6Hr1G054060.7 , HORVU6Hr1G054060.6 , HORVU6Hr1G054060.5 , HORVU6Hr1G054060.4 , HORVU6Hr1G054060.3 , HORVU6Hr1G054060.2 , HORVU6Hr1G054060.1
Wheat TraesCS6D02G194800 , TraesCS6D02G194800 , TraesCS6A02G212800 , TraesCS6A02G212800 , TraesCS6B02G241600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G223100 PAP/25A associated domain containing protein, putative, expressed -
2 Sobic.010G139500 phospholipid-transporting ATPase, putative, expressed K01530: phospholipid-translocating ATPase
3 Sobic.001G287500 heat shock protein DnaJ, putative, expressed K09533: DnaJ homolog subfamily C member 13
4 Sobic.003G233400 expressed protein -
5 Sobic.004G023100 protein binding protein, putative, expressed -
6 Sobic.003G314700 expressed protein -
7 Sobic.002G179400 DNA binding protein, putative, expressed -
8 Sobic.004G040500 expressed protein -
9 Sobic.003G163200 expressed protein K11654: SMARCA5, SNF2H, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
10 Sobic.003G405500 mannosyl-oligosaccharide glucosidase, putative, expressed K01228: mannosyl-oligosaccharide glucosidase
11 Sobic.010G000800 PHD-finger domain containing protein, expressed -
12 Sobic.008G124800 expressed protein -
13 Sobic.004G322400 WD40-like, putative, expressed -
14 Sobic.002G119600 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
15 Sobic.001G404600 expressed protein K18270: Rab3 GTPase-activating protein catalytic subunit
16 Sobic.009G182600 SH2 motif, putative, expressed K11292: SUPT6H, transcription elongation factor SPT6
17 Sobic.008G091300 PolI-like DNA polymerase, putative, expressed K02349: DNA polymerase theta
18 Sobic.009G084900 expressed protein -
19 Sobic.003G189600 M16 domain containing zinc peptidase, putative, expressed -
20 Sobic.001G426600 SH3 domain containing protein, expressed -


Gene co-expression network
sample Sobic004G204100 Sobic004G204100 Sobic010G223100 Sobic010G223100 Sobic004G204100--Sobic010G223100 Sobic010G139500 Sobic010G139500 Sobic004G204100--Sobic010G139500 Sobic001G287500 Sobic001G287500 Sobic004G204100--Sobic001G287500 Sobic003G233400 Sobic003G233400 Sobic004G204100--Sobic003G233400 Sobic004G023100 Sobic004G023100 Sobic004G204100--Sobic004G023100 Sobic003G314700 Sobic003G314700 Sobic004G204100--Sobic003G314700 Sobic002G179400 Sobic002G179400 Sobic004G204100--Sobic002G179400 Sobic004G040500 Sobic004G040500 Sobic004G204100--Sobic004G040500 Sobic003G163200 Sobic003G163200 Sobic004G204100--Sobic003G163200 Sobic010G223100--Sobic004G204100 Sobic004G322400 Sobic004G322400 Sobic010G223100--Sobic004G322400 Sobic010G275500 Sobic010G275500 Sobic010G223100--Sobic010G275500 Sobic009G084900 Sobic009G084900 Sobic010G223100--Sobic009G084900 Sobic010G223100--Sobic004G023100 Sobic010G223100--Sobic001G287500 Sobic003G072200 Sobic003G072200 Sobic010G223100--Sobic003G072200 Sobic003G189600 Sobic003G189600 Sobic010G223100--Sobic003G189600 Sobic010G185400 Sobic010G185400 Sobic010G223100--Sobic010G185400 Sobic010G139500--Sobic004G204100 Sobic003G334700 Sobic003G334700 Sobic010G139500--Sobic003G334700 Sobic002G119600 Sobic002G119600 Sobic010G139500--Sobic002G119600 Sobic010G139500--Sobic003G314700 Sobic003G405500 Sobic003G405500 Sobic010G139500--Sobic003G405500 Sobic008G124800 Sobic008G124800 Sobic010G139500--Sobic008G124800 Sobic002G412700 Sobic002G412700 Sobic010G139500--Sobic002G412700 Sobic007G145400 Sobic007G145400 Sobic010G139500--Sobic007G145400 Sobic010G070600 Sobic010G070600 Sobic010G139500--Sobic010G070600 Sobic001G287500--Sobic003G233400 Sobic001G287500--Sobic003G072200 Sobic007G098500 Sobic007G098500 Sobic001G287500--Sobic007G098500 Sobic004G051200 Sobic004G051200 Sobic001G287500--Sobic004G051200 Sobic008G092600 Sobic008G092600 Sobic001G287500--Sobic008G092600 Sobic001G347500 Sobic001G347500 Sobic001G287500--Sobic001G347500 Sobic001G426600 Sobic001G426600 Sobic001G287500--Sobic001G426600 Sobic001G287500--Sobic004G040500 Sobic001G287500--Sobic004G204100 Sobic003G233400--Sobic001G287500 Sobic003G233400--Sobic003G072200 Sobic003G233400--Sobic007G098500 Sobic001G137000 Sobic001G137000 Sobic003G233400--Sobic001G137000 Sobic003G312100 Sobic003G312100 Sobic003G233400--Sobic003G312100 Sobic003G233400--Sobic008G092600 Sobic002G396500 Sobic002G396500 Sobic003G233400--Sobic002G396500 Sobic003G233400--Sobic002G179400 Sobic003G233400--Sobic004G051200 Sobic001G542500 Sobic001G542500 Sobic004G023100--Sobic001G542500 Sobic008G085300 Sobic008G085300 Sobic004G023100--Sobic008G085300 Sobic002G397500 Sobic002G397500 Sobic004G023100--Sobic002G397500 Sobic004G023100--Sobic004G040500 Sobic004G291900 Sobic004G291900 Sobic004G023100--Sobic004G291900 Sobic009G109200 Sobic009G109200 Sobic004G023100--Sobic009G109200 Sobic004G023100--Sobic001G287500 Sobic001G002000 Sobic001G002000 Sobic004G023100--Sobic001G002000 Sobic004G023100--Sobic010G223100 Sobic003G029600 Sobic003G029600 Sobic003G314700--Sobic003G029600 Sobic003G314700--Sobic008G124800 Sobic001G437400 Sobic001G437400 Sobic003G314700--Sobic001G437400 Sobic003G240700 Sobic003G240700 Sobic003G314700--Sobic003G240700 Sobic003G314700--Sobic003G405500 Sobic007G019300 Sobic007G019300 Sobic003G314700--Sobic007G019300 Sobic003G314700--Sobic004G204100 Sobic003G314700--Sobic001G426600 Sobic003G314700--Sobic002G412700 Sobic001G493700 Sobic001G493700 Sobic002G179400--Sobic001G493700 Sobic002G042600 Sobic002G042600 Sobic002G179400--Sobic002G042600 Sobic004G053500 Sobic004G053500 Sobic002G179400--Sobic004G053500 Sobic002G429300 Sobic002G429300 Sobic002G179400--Sobic002G429300 Sobic006G184900 Sobic006G184900 Sobic002G179400--Sobic006G184900 Sobic002G179400--Sobic003G233400 Sobic002G133300 Sobic002G133300 Sobic002G179400--Sobic002G133300 Sobic001G065100 Sobic001G065100 Sobic002G179400--Sobic001G065100 Sobic002G179400--Sobic004G322400 Sobic004G040500--Sobic008G092600 Sobic002G147600 Sobic002G147600 Sobic004G040500--Sobic002G147600 Sobic002G335600 Sobic002G335600 Sobic004G040500--Sobic002G335600 Sobic004G040500--Sobic001G493700 Sobic004G040500--Sobic003G072200 Sobic004G040500--Sobic003G233400 Sobic004G040500--Sobic004G023100 Sobic004G040500--Sobic001G287500 Sobic003G171400 Sobic003G171400 Sobic004G040500--Sobic003G171400 Sobic004G265500 Sobic004G265500 Sobic003G163200--Sobic004G265500 Sobic003G163200--Sobic002G042600 Sobic010G000800 Sobic010G000800 Sobic003G163200--Sobic010G000800 Sobic003G043000 Sobic003G043000 Sobic003G163200--Sobic003G043000 Sobic003G163200--Sobic002G179400 Sobic003G163200--Sobic010G223100 Sobic003G163200--Sobic002G429300 Sobic003G163200--Sobic006G184900 Sobic003G163200--Sobic004G204100
Octagon: transcription factors


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