Gene annotation
Transcriptome id Sobic.009G182600.1
Synonym GTB1, Sb09g024270
Functional annotation SH2 motif, putative, expressed
UniProt A0A1B6P998
Pfam PF14641 PF14632 PF14639 PF14635 PF14878 PF14633
Panther DB PTHR10145 PTHR10145:SF6
NCBI CDD -
KEGG Orthology K11292; SUPT6H, transcription elongation factor SPT6
Gene Ontology GO:0003677; DNA binding GO:0006357regulation of transcription by RNA polymerase II


Orthologs (automatic annotation)
TAIR AT1G65440 : global transcription factor group B1
RAP-DB (Rice) LOC_Os05g41510.1 : SH2 motif, putative, expressed
MaizeGDB (Corn) Zm00025a044096 , Zm00025a044095
Brachypodium PNT76874 , PNT76875 , KQK05622 , KQK05623 , PNT71003
Barley HORVU0Hr1G001120.4 , HORVU0Hr1G001120.2 , HORVU0Hr1G001120.3 , HORVU0Hr1G001120.1 , HORVU1Hr1G067820.2 , HORVU1Hr1G067820.4 , HORVU1Hr1G067820.5 , HORVU1Hr1G067820.3 , HORVU1Hr1G067820.1
Wheat TraesCS1D02G311400 , TraesCS1B02G322900 , TraesCS1B02G322900 , TraesCS1D02G311400 , TraesCS1A02G311400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G126300 RING E3 ligase protein, putative, expressed K16279: E3 ubiquitin-protein ligase KEG
2 Sobic.002G179400 DNA binding protein, putative, expressed -
3 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
4 Sobic.004G040500 expressed protein -
5 Sobic.004G204100 expressed protein -
6 Sobic.002G164200 PFT1, putative, expressed K15168: mediator of RNA polymerase II transcription subunit 25
7 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1
8 Sobic.001G137000 aberrant pollen transmission 1, putative, expressed -
9 Sobic.008G033900 PHD-finger family protein, expressed -
10 Sobic.002G396500 FAT domain-containing protein, putative, expressed K08874: transformation/transcription domain-associated protein
11 Sobic.003G214600 transcriptional corepressor LEUNIG, putative, expressed -
12 Sobic.003G062300 NF-X1-type zinc finger protein, putative, expressed K15683: NFXL1, NF-X1-type zinc finger protein NFXL1
13 Sobic.006G088200 nonsense-mediated decay UPF3, putative, expressed K14328: UPF3, regulator of nonsense transcripts 3
14 Sobic.001G090100 SRPK4, putative, expressed K08832: SRPK3, serine/threonine-protein kinase SRPK3
15 Sobic.010G105200 SYD, putative, expressed -
16 Sobic.006G224800 expressed protein -
17 Sobic.001G287500 heat shock protein DnaJ, putative, expressed K09533: DnaJ homolog subfamily C member 13
18 Sobic.010G001100 chromo domain containing protein, expressed -
19 Sobic.003G233400 expressed protein -
20 Sobic.001G457900 expressed protein -


Gene co-expression network
sample Sobic009G182600 Sobic009G182600 Sobic009G126300 Sobic009G126300 Sobic009G182600--Sobic009G126300 Sobic002G179400 Sobic002G179400 Sobic009G182600--Sobic002G179400 Sobic001G493700 Sobic001G493700 Sobic009G182600--Sobic001G493700 Sobic004G040500 Sobic004G040500 Sobic009G182600--Sobic004G040500 Sobic004G204100 Sobic004G204100 Sobic009G182600--Sobic004G204100 Sobic002G164200 Sobic002G164200 Sobic009G182600--Sobic002G164200 Sobic009G255600 Sobic009G255600 Sobic009G182600--Sobic009G255600 Sobic001G137000 Sobic001G137000 Sobic009G182600--Sobic001G137000 Sobic008G033900 Sobic008G033900 Sobic009G182600--Sobic008G033900 Sobic009G126300--Sobic009G182600 Sobic009G126300--Sobic001G493700 Sobic007G168300 Sobic007G168300 Sobic009G126300--Sobic007G168300 Sobic009G126300--Sobic001G137000 Sobic009G126300--Sobic002G179400 Sobic004G088501 Sobic004G088501 Sobic009G126300--Sobic004G088501 Sobic009G126300--Sobic009G255600 Sobic001G117200 Sobic001G117200 Sobic009G126300--Sobic001G117200 Sobic002G388500 Sobic002G388500 Sobic009G126300--Sobic002G388500 Sobic002G179400--Sobic001G493700 Sobic002G042600 Sobic002G042600 Sobic002G179400--Sobic002G042600 Sobic004G053500 Sobic004G053500 Sobic002G179400--Sobic004G053500 Sobic002G429300 Sobic002G429300 Sobic002G179400--Sobic002G429300 Sobic006G184900 Sobic006G184900 Sobic002G179400--Sobic006G184900 Sobic003G233400 Sobic003G233400 Sobic002G179400--Sobic003G233400 Sobic002G133300 Sobic002G133300 Sobic002G179400--Sobic002G133300 Sobic001G065100 Sobic001G065100 Sobic002G179400--Sobic001G065100 Sobic004G322400 Sobic004G322400 Sobic002G179400--Sobic004G322400 Sobic001G493700--Sobic002G179400 Sobic005G162500 Sobic005G162500 Sobic001G493700--Sobic005G162500 Sobic001G493700--Sobic006G184900 Sobic001G493700--Sobic002G133300 Sobic009G131300 Sobic009G131300 Sobic001G493700--Sobic009G131300 Sobic001G493700--Sobic002G429300 Sobic001G493700--Sobic002G042600 Sobic002G335600 Sobic002G335600 Sobic001G493700--Sobic002G335600 Sobic006G088200 Sobic006G088200 Sobic001G493700--Sobic006G088200 Sobic008G092600 Sobic008G092600 Sobic004G040500--Sobic008G092600 Sobic002G147600 Sobic002G147600 Sobic004G040500--Sobic002G147600 Sobic004G040500--Sobic002G335600 Sobic004G040500--Sobic001G493700 Sobic003G072200 Sobic003G072200 Sobic004G040500--Sobic003G072200 Sobic004G040500--Sobic003G233400 Sobic004G023100 Sobic004G023100 Sobic004G040500--Sobic004G023100 Sobic001G287500 Sobic001G287500 Sobic004G040500--Sobic001G287500 Sobic003G171400 Sobic003G171400 Sobic004G040500--Sobic003G171400 Sobic010G223100 Sobic010G223100 Sobic004G204100--Sobic010G223100 Sobic010G139500 Sobic010G139500 Sobic004G204100--Sobic010G139500 Sobic004G204100--Sobic001G287500 Sobic004G204100--Sobic003G233400 Sobic004G204100--Sobic004G023100 Sobic003G314700 Sobic003G314700 Sobic004G204100--Sobic003G314700 Sobic004G204100--Sobic002G179400 Sobic004G204100--Sobic004G040500 Sobic003G163200 Sobic003G163200 Sobic004G204100--Sobic003G163200 Sobic007G183300 Sobic007G183300 Sobic002G164200--Sobic007G183300 Sobic003G062300 Sobic003G062300 Sobic002G164200--Sobic003G062300 Sobic002G164200--Sobic009G182600 Sobic006G224800 Sobic006G224800 Sobic002G164200--Sobic006G224800 Sobic001G051700 Sobic001G051700 Sobic002G164200--Sobic001G051700 Sobic005G133800 Sobic005G133800 Sobic002G164200--Sobic005G133800 Sobic002G029100 Sobic002G029100 Sobic002G164200--Sobic002G029100 Sobic007G000200 Sobic007G000200 Sobic002G164200--Sobic007G000200 Sobic005G200800 Sobic005G200800 Sobic002G164200--Sobic005G200800 Sobic010G186600 Sobic010G186600 Sobic009G255600--Sobic010G186600 Sobic003G416700 Sobic003G416700 Sobic009G255600--Sobic003G416700 Sobic003G214600 Sobic003G214600 Sobic009G255600--Sobic003G214600 Sobic009G255600--Sobic005G200800 Sobic009G119000 Sobic009G119000 Sobic009G255600--Sobic009G119000 Sobic009G255600--Sobic002G029100 Sobic003G042400 Sobic003G042400 Sobic009G255600--Sobic003G042400 Sobic001G291800 Sobic001G291800 Sobic009G255600--Sobic001G291800 Sobic003G360400 Sobic003G360400 Sobic009G255600--Sobic003G360400 Sobic001G137000--Sobic008G092600 Sobic007G098500 Sobic007G098500 Sobic001G137000--Sobic007G098500 Sobic001G137000--Sobic003G233400 Sobic003G312100 Sobic003G312100 Sobic001G137000--Sobic003G312100 Sobic001G137000--Sobic001G117200 Sobic002G396500 Sobic002G396500 Sobic001G137000--Sobic002G396500 Sobic001G050600 Sobic001G050600 Sobic001G137000--Sobic001G050600 Sobic008G098900 Sobic008G098900 Sobic001G137000--Sobic008G098900 Sobic008G099800 Sobic008G099800 Sobic001G137000--Sobic008G099800 Sobic003G196300 Sobic003G196300 Sobic008G033900--Sobic003G196300 Sobic008G033900--Sobic002G133300 Sobic003G379200 Sobic003G379200 Sobic008G033900--Sobic003G379200 Sobic009G256300 Sobic009G256300 Sobic008G033900--Sobic009G256300 Sobic001G457900 Sobic001G457900 Sobic008G033900--Sobic001G457900 Sobic008G033900--Sobic001G493700 Sobic002G308700 Sobic002G308700 Sobic008G033900--Sobic002G308700 Sobic008G033900--Sobic002G179400 Sobic004G276400 Sobic004G276400 Sobic008G033900--Sobic004G276400
Octagon: transcription factors


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