Gene annotation
Transcriptome id Sobic.001G090100.1
Synonym Sb01g008130, SRPK4
Functional annotation SRPK4, putative, expressed
UniProt C5X151
Pfam PF00069
Panther DB PTHR24055 PTHR24055:SF228
NCBI CDD -
KEGG Orthology K08832; SRPK3, serine/threonine-protein kinase SRPK3
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT3G53030 : ser/arg-rich protein kinase 4
RAP-DB (Rice) LOC_Os03g53720.1 : SRPK4, putative, expressed
MaizeGDB (Corn) Zm00025a008141 , Zm00025a016810
Brachypodium KQK13220 , KQK13218 , KQK13219 , KQK13217 , PNT74137 , PNT74136
Barley HORVU1Hr1G082710.1 , HORVU1Hr1G034750.1 , HORVU5Hr1G094810.2 , HORVU5Hr1G094810.5 , HORVU5Hr1G094810.4 , HORVU6Hr1G081350.9 , HORVU6Hr1G081350.8 , HORVU6Hr1G081350.7 , HORVU6Hr1G081350.5 , HORVU6Hr1G081350.4 , HORVU6Hr1G081350.3 , HORVU6Hr1G081350.2 , HORVU6Hr1G081350.1 , HORVU3Hr1G021690.1 , HORVU5Hr1G046420.3 , HORVU5Hr1G046420.2 , HORVU5Hr1G046420.1 , HORVU4Hr1G018630.1 , HORVU4Hr1G018630.2 , HORVU6Hr1G081350.11 , HORVU6Hr1G081350.10 , HORVU2Hr1G091920.1 , HORVU4Hr1G059640.2 , HORVU4Hr1G059640.3 , HORVU4Hr1G059640.1 , HORVU7Hr1G058230.1 , HORVU7Hr1G090500.1 , HORVU7Hr1G090500.2 , HORVU1Hr1G094650.3 , HORVU1Hr1G094650.2 , HORVU1Hr1G094650.1 , HORVU5Hr1G094810.1 , HORVU5Hr1G094810.3 , HORVU7Hr1G121360.1 , HORVU6Hr1G019910.1 , HORVU6Hr1G019910.2 , HORVU6Hr1G019910.3 , HORVU6Hr1G019910.4 , HORVU3Hr1G049750.1 , HORVU2Hr1G066530.1
Wheat TraesCS5B02G392200 , TraesCS5D02G397000 , TraesCS5A02G387100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G000800 PHD-finger domain containing protein, expressed -
2 Sobic.006G077200 ubiquitin interaction motif-containing protein, putative, expressed -
3 Sobic.003G314700 expressed protein -
4 Sobic.005G115500 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed K13998: dihydrofolate reductase / thymidylate synthase
5 Sobic.003G405500 mannosyl-oligosaccharide glucosidase, putative, expressed K01228: mannosyl-oligosaccharide glucosidase
6 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase
7 Sobic.003G379200 wound-responsive family protein, putative, expressed -
8 Sobic.003G189600 M16 domain containing zinc peptidase, putative, expressed -
9 Sobic.009G182600 SH2 motif, putative, expressed K11292: SUPT6H, transcription elongation factor SPT6
10 Sobic.008G082500 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
11 Sobic.003G062300 NF-X1-type zinc finger protein, putative, expressed K15683: NFXL1, NF-X1-type zinc finger protein NFXL1
12 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
13 Sobic.004G167200 nucleoside-diphosphate-sugar epimerase, putative, expressed -
14 Sobic.002G179400 DNA binding protein, putative, expressed -
15 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1
16 Sobic.006G224800 expressed protein -
17 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
18 Sobic.006G261400 peptidase, trypsin-like serine and cysteine proteases, putative, expressed -
19 Sobic.009G045900 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
20 Sobic.005G133800 NEF1, putative, expressed -


Gene co-expression network
sample Sobic001G090100 Sobic001G090100 Sobic010G000800 Sobic010G000800 Sobic001G090100--Sobic010G000800 Sobic006G077200 Sobic006G077200 Sobic001G090100--Sobic006G077200 Sobic003G314700 Sobic003G314700 Sobic001G090100--Sobic003G314700 Sobic005G115500 Sobic005G115500 Sobic001G090100--Sobic005G115500 Sobic003G405500 Sobic003G405500 Sobic001G090100--Sobic003G405500 Sobic001G248100 Sobic001G248100 Sobic001G090100--Sobic001G248100 Sobic003G379200 Sobic003G379200 Sobic001G090100--Sobic003G379200 Sobic003G189600 Sobic003G189600 Sobic001G090100--Sobic003G189600 Sobic009G182600 Sobic009G182600 Sobic001G090100--Sobic009G182600 Sobic004G265500 Sobic004G265500 Sobic010G000800--Sobic004G265500 Sobic004G322400 Sobic004G322400 Sobic010G000800--Sobic004G322400 Sobic003G163200 Sobic003G163200 Sobic010G000800--Sobic003G163200 Sobic010G000800--Sobic003G379200 Sobic010G000800--Sobic003G189600 Sobic002G179400 Sobic002G179400 Sobic010G000800--Sobic002G179400 Sobic010G000800--Sobic006G077200 Sobic006G261400 Sobic006G261400 Sobic010G000800--Sobic006G261400 Sobic002G429300 Sobic002G429300 Sobic010G000800--Sobic002G429300 Sobic009G084900 Sobic009G084900 Sobic006G077200--Sobic009G084900 Sobic010G185400 Sobic010G185400 Sobic006G077200--Sobic010G185400 Sobic010G059500 Sobic010G059500 Sobic006G077200--Sobic010G059500 Sobic001G145400 Sobic001G145400 Sobic006G077200--Sobic001G145400 Sobic001G493200 Sobic001G493200 Sobic006G077200--Sobic001G493200 Sobic003G249600 Sobic003G249600 Sobic006G077200--Sobic003G249600 Sobic008G082500 Sobic008G082500 Sobic006G077200--Sobic008G082500 Sobic006G077200--Sobic003G189600 Sobic004G096400 Sobic004G096400 Sobic006G077200--Sobic004G096400 Sobic003G029600 Sobic003G029600 Sobic003G314700--Sobic003G029600 Sobic008G124800 Sobic008G124800 Sobic003G314700--Sobic008G124800 Sobic001G437400 Sobic001G437400 Sobic003G314700--Sobic001G437400 Sobic003G240700 Sobic003G240700 Sobic003G314700--Sobic003G240700 Sobic003G314700--Sobic003G405500 Sobic007G019300 Sobic007G019300 Sobic003G314700--Sobic007G019300 Sobic004G204100 Sobic004G204100 Sobic003G314700--Sobic004G204100 Sobic001G426600 Sobic001G426600 Sobic003G314700--Sobic001G426600 Sobic002G412700 Sobic002G412700 Sobic003G314700--Sobic002G412700 Sobic001G291800 Sobic001G291800 Sobic005G115500--Sobic001G291800 Sobic005G115500--Sobic001G145400 Sobic005G115500--Sobic001G248100 Sobic002G145800 Sobic002G145800 Sobic005G115500--Sobic002G145800 Sobic003G099300 Sobic003G099300 Sobic005G115500--Sobic003G099300 Sobic007G183300 Sobic007G183300 Sobic005G115500--Sobic007G183300 Sobic005G110499 Sobic005G110499 Sobic005G115500--Sobic005G110499 Sobic002G430300 Sobic002G430300 Sobic005G115500--Sobic002G430300 Sobic001G051700 Sobic001G051700 Sobic005G115500--Sobic001G051700 Sobic003G405500--Sobic001G145400 Sobic003G405500--Sobic008G124800 Sobic003G405500--Sobic002G430300 Sobic003G405500--Sobic009G084900 Sobic006G166200 Sobic006G166200 Sobic003G405500--Sobic006G166200 Sobic004G141800 Sobic004G141800 Sobic003G405500--Sobic004G141800 Sobic003G405500--Sobic006G077200 Sobic003G405500--Sobic010G059500 Sobic003G405500--Sobic003G314700 Sobic001G248100--Sobic002G412700 Sobic001G248100--Sobic010G000800 Sobic007G145400 Sobic007G145400 Sobic001G248100--Sobic007G145400 Sobic001G248100--Sobic005G115500 Sobic010G262100 Sobic010G262100 Sobic001G248100--Sobic010G262100 Sobic001G248100--Sobic006G261400 Sobic002G160700 Sobic002G160700 Sobic001G248100--Sobic002G160700 Sobic004G155600 Sobic004G155600 Sobic001G248100--Sobic004G155600 Sobic001G248100--Sobic003G405500 Sobic003G379200--Sobic006G261400 Sobic009G044800 Sobic009G044800 Sobic003G379200--Sobic009G044800 Sobic006G088200 Sobic006G088200 Sobic003G379200--Sobic006G088200 Sobic003G360400 Sobic003G360400 Sobic003G379200--Sobic003G360400 Sobic008G083200 Sobic008G083200 Sobic003G379200--Sobic008G083200 Sobic003G379200--Sobic010G000800 Sobic001G354600 Sobic001G354600 Sobic003G379200--Sobic001G354600 Sobic003G363700 Sobic003G363700 Sobic003G379200--Sobic003G363700 Sobic006G174850 Sobic006G174850 Sobic003G379200--Sobic006G174850 Sobic003G189600--Sobic005G110499 Sobic003G189600--Sobic010G185400 Sobic007G218000 Sobic007G218000 Sobic003G189600--Sobic007G218000 Sobic003G189600--Sobic006G077200 Sobic003G394200 Sobic003G394200 Sobic003G189600--Sobic003G394200 Sobic006G224800 Sobic006G224800 Sobic003G189600--Sobic006G224800 Sobic009G249700 Sobic009G249700 Sobic003G189600--Sobic009G249700 Sobic001G308400 Sobic001G308400 Sobic003G189600--Sobic001G308400 Sobic003G189600--Sobic004G322400 Sobic009G126300 Sobic009G126300 Sobic009G182600--Sobic009G126300 Sobic009G182600--Sobic002G179400 Sobic001G493700 Sobic001G493700 Sobic009G182600--Sobic001G493700 Sobic004G040500 Sobic004G040500 Sobic009G182600--Sobic004G040500 Sobic009G182600--Sobic004G204100 Sobic002G164200 Sobic002G164200 Sobic009G182600--Sobic002G164200 Sobic009G255600 Sobic009G255600 Sobic009G182600--Sobic009G255600 Sobic001G137000 Sobic001G137000 Sobic009G182600--Sobic001G137000 Sobic008G033900 Sobic008G033900 Sobic009G182600--Sobic008G033900
Octagon: transcription factors


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