Gene annotation
Transcriptome id Sobic.009G045900.2
Synonym Sb09g003930
Functional annotation tRNA synthetase class II core domain containing protein, expressed
UniProt A0A1Z5R1W3
Pfam PF03129 PF13393
Panther DB PTHR11476 PTHR11476:SF7
NCBI CDD -
KEGG Orthology K01892; HARS, histidyl-tRNA synthetase
Gene Ontology GO:0005737; cytoplasm


Orthologs (automatic annotation)
TAIR AT3G02760 : Class II aaRS and biotin synthetases superfamily protein
RAP-DB (Rice) LOC_Os05g05840.1 : tRNA synthetase class II core domain containing protein, expressed
MaizeGDB (Corn) Zm00025a038086 , Zm00025a041043
Brachypodium KQK07476
Barley HORVU1Hr1G021700.8 , HORVU1Hr1G021700.5 , HORVU1Hr1G021700.4 , HORVU1Hr1G021700.7 , HORVU1Hr1G021700.6 , HORVU1Hr1G021700.1 , HORVU1Hr1G021700.3 , HORVU1Hr1G021700.2
Wheat TraesCS1D02G101300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G135200 importin subunit beta, putative, expressed K14293: KPNB1, importin subunit beta-1
2 Sobic.002G047000 YT521-B, putative, expressed -
3 Sobic.002G246700 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
4 Sobic.002G408900 adenyl cyclase, putative, expressed -
5 Sobic.001G090100 SRPK4, putative, expressed K08832: SRPK3, serine/threonine-protein kinase SRPK3
6 Sobic.003G314700 expressed protein -
7 Sobic.010G206300 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
8 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase
9 Sobic.001G537500 GTP-binding protein, putative, expressed K06944: uncharacterized protein
10 Sobic.005G115500 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed K13998: dihydrofolate reductase / thymidylate synthase
11 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
12 Sobic.002G160700 WD domain, G-beta repeat domain containing protein, expressed K12880: THO complex subunit 3
13 Sobic.002G412700 histone-arginine methyltransferase CARM1, putative, expressed K05931: CARM1, type I protein arginine methyltransferase
14 Sobic.009G249800 AARP2CN domain containing protein, expressed K14799: pre-rRNA-processing protein TSR1
15 Sobic.002G234300 NOL1/NOP2/sun family protein, putative, expressed K15334: NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
16 Sobic.008G157200 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
17 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
18 Sobic.010G236600 oligopeptidase, putative, expressed K01410: mitochondrial intermediate peptidase
19 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma
20 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19


Gene co-expression network
sample Sobic009G045900 Sobic009G045900 Sobic008G135200 Sobic008G135200 Sobic009G045900--Sobic008G135200 Sobic002G047000 Sobic002G047000 Sobic009G045900--Sobic002G047000 Sobic002G246700 Sobic002G246700 Sobic009G045900--Sobic002G246700 Sobic002G408900 Sobic002G408900 Sobic009G045900--Sobic002G408900 Sobic001G090100 Sobic001G090100 Sobic009G045900--Sobic001G090100 Sobic003G314700 Sobic003G314700 Sobic009G045900--Sobic003G314700 Sobic010G206300 Sobic010G206300 Sobic009G045900--Sobic010G206300 Sobic001G248100 Sobic001G248100 Sobic009G045900--Sobic001G248100 Sobic001G537500 Sobic001G537500 Sobic009G045900--Sobic001G537500 Sobic002G020700 Sobic002G020700 Sobic008G135200--Sobic002G020700 Sobic008G135200--Sobic009G045900 Sobic006G073200 Sobic006G073200 Sobic008G135200--Sobic006G073200 Sobic008G157200 Sobic008G157200 Sobic008G135200--Sobic008G157200 Sobic002G350600 Sobic002G350600 Sobic008G135200--Sobic002G350600 Sobic001G251100 Sobic001G251100 Sobic008G135200--Sobic001G251100 Sobic003G029600 Sobic003G029600 Sobic008G135200--Sobic003G029600 Sobic008G033500 Sobic008G033500 Sobic008G135200--Sobic008G033500 Sobic007G054800 Sobic007G054800 Sobic008G135200--Sobic007G054800 Sobic002G047000--Sobic009G045900 Sobic008G160000 Sobic008G160000 Sobic002G047000--Sobic008G160000 Sobic002G234300 Sobic002G234300 Sobic002G047000--Sobic002G234300 Sobic001G431400 Sobic001G431400 Sobic002G047000--Sobic001G431400 Sobic004G256000 Sobic004G256000 Sobic002G047000--Sobic004G256000 Sobic010G142700 Sobic010G142700 Sobic002G047000--Sobic010G142700 Sobic001G052400 Sobic001G052400 Sobic002G047000--Sobic001G052400 Sobic009G016400 Sobic009G016400 Sobic002G047000--Sobic009G016400 Sobic008G169200 Sobic008G169200 Sobic002G047000--Sobic008G169200 Sobic001G455800 Sobic001G455800 Sobic002G246700--Sobic001G455800 Sobic002G246700--Sobic002G408900 Sobic002G246700--Sobic009G045900 Sobic009G249800 Sobic009G249800 Sobic002G246700--Sobic009G249800 Sobic004G208500 Sobic004G208500 Sobic002G246700--Sobic004G208500 Sobic002G246700--Sobic001G537500 Sobic007G071900 Sobic007G071900 Sobic002G246700--Sobic007G071900 Sobic008G085700 Sobic008G085700 Sobic002G246700--Sobic008G085700 Sobic001G117800 Sobic001G117800 Sobic002G246700--Sobic001G117800 Sobic002G150700 Sobic002G150700 Sobic002G408900--Sobic002G150700 Sobic002G408900--Sobic009G249800 Sobic002G408900--Sobic004G208500 Sobic002G408900--Sobic002G246700 Sobic001G015400 Sobic001G015400 Sobic002G408900--Sobic001G015400 Sobic002G398700 Sobic002G398700 Sobic002G408900--Sobic002G398700 Sobic006G193300 Sobic006G193300 Sobic002G408900--Sobic006G193300 Sobic002G160700 Sobic002G160700 Sobic002G408900--Sobic002G160700 Sobic001G099900 Sobic001G099900 Sobic002G408900--Sobic001G099900 Sobic010G000800 Sobic010G000800 Sobic001G090100--Sobic010G000800 Sobic006G077200 Sobic006G077200 Sobic001G090100--Sobic006G077200 Sobic001G090100--Sobic003G314700 Sobic005G115500 Sobic005G115500 Sobic001G090100--Sobic005G115500 Sobic003G405500 Sobic003G405500 Sobic001G090100--Sobic003G405500 Sobic001G090100--Sobic001G248100 Sobic003G379200 Sobic003G379200 Sobic001G090100--Sobic003G379200 Sobic003G189600 Sobic003G189600 Sobic001G090100--Sobic003G189600 Sobic009G182600 Sobic009G182600 Sobic001G090100--Sobic009G182600 Sobic003G314700--Sobic003G029600 Sobic008G124800 Sobic008G124800 Sobic003G314700--Sobic008G124800 Sobic001G437400 Sobic001G437400 Sobic003G314700--Sobic001G437400 Sobic003G240700 Sobic003G240700 Sobic003G314700--Sobic003G240700 Sobic003G314700--Sobic003G405500 Sobic007G019300 Sobic007G019300 Sobic003G314700--Sobic007G019300 Sobic004G204100 Sobic004G204100 Sobic003G314700--Sobic004G204100 Sobic001G426600 Sobic001G426600 Sobic003G314700--Sobic001G426600 Sobic002G412700 Sobic002G412700 Sobic003G314700--Sobic002G412700 Sobic008G082500 Sobic008G082500 Sobic010G206300--Sobic008G082500 Sobic001G145400 Sobic001G145400 Sobic010G206300--Sobic001G145400 Sobic010G206300--Sobic007G054800 Sobic010G206300--Sobic003G405500 Sobic009G084900 Sobic009G084900 Sobic010G206300--Sobic009G084900 Sobic010G206300--Sobic001G455800 Sobic001G058200 Sobic001G058200 Sobic010G206300--Sobic001G058200 Sobic009G201700 Sobic009G201700 Sobic010G206300--Sobic009G201700 Sobic001G110600 Sobic001G110600 Sobic010G206300--Sobic001G110600 Sobic001G248100--Sobic002G412700 Sobic001G248100--Sobic010G000800 Sobic007G145400 Sobic007G145400 Sobic001G248100--Sobic007G145400 Sobic001G248100--Sobic005G115500 Sobic010G262100 Sobic010G262100 Sobic001G248100--Sobic010G262100 Sobic006G261400 Sobic006G261400 Sobic001G248100--Sobic006G261400 Sobic001G248100--Sobic002G160700 Sobic004G155600 Sobic004G155600 Sobic001G248100--Sobic004G155600 Sobic001G248100--Sobic003G405500 Sobic001G537500--Sobic006G073200 Sobic004G167200 Sobic004G167200 Sobic001G537500--Sobic004G167200 Sobic006G002800 Sobic006G002800 Sobic001G537500--Sobic006G002800 Sobic004G275600 Sobic004G275600 Sobic001G537500--Sobic004G275600 Sobic004G257100 Sobic004G257100 Sobic001G537500--Sobic004G257100 Sobic001G537500--Sobic007G145400 Sobic001G537500--Sobic005G115500 Sobic001G178300 Sobic001G178300 Sobic001G537500--Sobic001G178300 Sobic001G537500--Sobic002G246700
Octagon: transcription factors


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