Gene annotation
Transcriptome id Sobic.009G249800.1
Synonym Sb09g030040
Functional annotation AARP2CN domain containing protein, expressed
UniProt C5YWK4
Pfam PF04950 PF08142
Panther DB PTHR12858
NCBI CDD -
KEGG Orthology K14799; pre-rRNA-processing protein TSR1
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT1G42440 : -
RAP-DB (Rice) LOC_Os11g19250.1 : AARP2CN domain containing protein, expressed
MaizeGDB (Corn) Zm00025a040821
Brachypodium PNT75932 , KQK18356 , KQK18357 , KQK18358
Barley HORVU7Hr1G083070.1 , HORVU7Hr1G083070.3 , HORVU7Hr1G083070.2 , HORVU7Hr1G083070.5 , HORVU7Hr1G083070.4 , HORVU7Hr1G083070.7 , HORVU7Hr1G083070.6 , HORVU7Hr1G083070.9 , HORVU7Hr1G083070.8 , HORVU7Hr1G083070.15 , HORVU7Hr1G083070.14 , HORVU7Hr1G083070.11 , HORVU7Hr1G083070.10 , HORVU7Hr1G083070.13 , HORVU7Hr1G083070.12
Wheat TraesCS7B02G249100 , TraesCS7A02G337800 , TraesCS7D02G345100 , TraesCS7D02G345100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G408900 adenyl cyclase, putative, expressed -
2 Sobic.004G208500 eukaryotic translation initiation factor 2A, putative, expressed K15026: translation initiation factor 2A
3 Sobic.001G251600 SET domain protein 123, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
4 Sobic.002G246700 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
5 Sobic.002G295900 ribosomal protein S15 containing protein, expressed -
6 Sobic.006G010400 tRNA-dihydrouridine synthase 3-like, putative, expressed K05544: tRNA-dihydrouridine synthase 3
7 Sobic.001G015400 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
8 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma
9 Sobic.004G256000 NOL1/NOP2/sun family protein, putative, expressed K14835: 25S rRNA (cytosine2870-C5)-methyltransferase
10 Sobic.007G071900 GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
11 Sobic.009G045900 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
12 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
13 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
14 Sobic.001G434200 AGAP008572-PA, putative, expressed K17796: mitochondrial import inner membrane translocase subunit TIM21
15 Sobic.001G468600 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
16 Sobic.001G099900 WD domain, G-beta repeat domain containing protein, expressed K14548: UTP4, U3 small nucleolar RNA-associated protein 4
17 Sobic.008G135200 importin subunit beta, putative, expressed K14293: KPNB1, importin subunit beta-1
18 Sobic.006G269900 bystin, putative, expressed K14797: ENP1, essential nuclear protein 1
19 Sobic.010G081700 PPR repeat domain containing protein, putative, expressed -
20 Sobic.002G150700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein


Gene co-expression network
sample Sobic009G249800 Sobic009G249800 Sobic002G408900 Sobic002G408900 Sobic009G249800--Sobic002G408900 Sobic004G208500 Sobic004G208500 Sobic009G249800--Sobic004G208500 Sobic001G251600 Sobic001G251600 Sobic009G249800--Sobic001G251600 Sobic002G246700 Sobic002G246700 Sobic009G249800--Sobic002G246700 Sobic002G295900 Sobic002G295900 Sobic009G249800--Sobic002G295900 Sobic006G010400 Sobic006G010400 Sobic009G249800--Sobic006G010400 Sobic001G015400 Sobic001G015400 Sobic009G249800--Sobic001G015400 Sobic001G460500 Sobic001G460500 Sobic009G249800--Sobic001G460500 Sobic004G256000 Sobic004G256000 Sobic009G249800--Sobic004G256000 Sobic002G150700 Sobic002G150700 Sobic002G408900--Sobic002G150700 Sobic002G408900--Sobic009G249800 Sobic002G408900--Sobic004G208500 Sobic002G408900--Sobic002G246700 Sobic002G408900--Sobic001G015400 Sobic002G398700 Sobic002G398700 Sobic002G408900--Sobic002G398700 Sobic006G193300 Sobic006G193300 Sobic002G408900--Sobic006G193300 Sobic002G160700 Sobic002G160700 Sobic002G408900--Sobic002G160700 Sobic001G099900 Sobic001G099900 Sobic002G408900--Sobic001G099900 Sobic001G467100 Sobic001G467100 Sobic004G208500--Sobic001G467100 Sobic004G208500--Sobic001G099900 Sobic004G208500--Sobic001G015400 Sobic004G208500--Sobic002G408900 Sobic004G208500--Sobic002G150700 Sobic001G161700 Sobic001G161700 Sobic004G208500--Sobic001G161700 Sobic010G223300 Sobic010G223300 Sobic004G208500--Sobic010G223300 Sobic005G110499 Sobic005G110499 Sobic004G208500--Sobic005G110499 Sobic005G163700 Sobic005G163700 Sobic004G208500--Sobic005G163700 Sobic001G251600--Sobic006G010400 Sobic002G423500 Sobic002G423500 Sobic001G251600--Sobic002G423500 SobicK004100 SobicK004100 Sobic001G251600--SobicK004100 Sobic001G251600--Sobic004G208500 Sobic001G145400 Sobic001G145400 Sobic001G251600--Sobic001G145400 Sobic001G251600--Sobic009G249800 Sobic001G251600--Sobic002G408900 Sobic002G394600 Sobic002G394600 Sobic001G251600--Sobic002G394600 Sobic002G412700 Sobic002G412700 Sobic001G251600--Sobic002G412700 Sobic001G455800 Sobic001G455800 Sobic002G246700--Sobic001G455800 Sobic002G246700--Sobic002G408900 Sobic009G045900 Sobic009G045900 Sobic002G246700--Sobic009G045900 Sobic002G246700--Sobic009G249800 Sobic002G246700--Sobic004G208500 Sobic001G537500 Sobic001G537500 Sobic002G246700--Sobic001G537500 Sobic007G071900 Sobic007G071900 Sobic002G246700--Sobic007G071900 Sobic008G085700 Sobic008G085700 Sobic002G246700--Sobic008G085700 Sobic001G117800 Sobic001G117800 Sobic002G246700--Sobic001G117800 Sobic002G295900--Sobic009G249800 Sobic003G388900 Sobic003G388900 Sobic002G295900--Sobic003G388900 Sobic001G304000 Sobic001G304000 Sobic002G295900--Sobic001G304000 Sobic004G212100 Sobic004G212100 Sobic002G295900--Sobic004G212100 Sobic002G367800 Sobic002G367800 Sobic002G295900--Sobic002G367800 Sobic001G490500 Sobic001G490500 Sobic002G295900--Sobic001G490500 Sobic003G196200 Sobic003G196200 Sobic002G295900--Sobic003G196200 Sobic006G029000 Sobic006G029000 Sobic002G295900--Sobic006G029000 Sobic002G295900--Sobic001G161700 Sobic006G010400--Sobic001G251600 Sobic006G084000 Sobic006G084000 Sobic006G010400--Sobic006G084000 Sobic006G010400--Sobic007G071900 Sobic006G010400--Sobic001G537500 Sobic006G010400--Sobic009G249800 Sobic007G140400 Sobic007G140400 Sobic006G010400--Sobic007G140400 Sobic008G051200 Sobic008G051200 Sobic006G010400--Sobic008G051200 Sobic004G257100 Sobic004G257100 Sobic006G010400--Sobic004G257100 Sobic006G010400--Sobic001G460500 Sobic001G015400--Sobic001G099900 Sobic001G015400--Sobic004G208500 Sobic007G005500 Sobic007G005500 Sobic001G015400--Sobic007G005500 Sobic006G021700 Sobic006G021700 Sobic001G015400--Sobic006G021700 Sobic003G143800 Sobic003G143800 Sobic001G015400--Sobic003G143800 Sobic006G260500 Sobic006G260500 Sobic001G015400--Sobic006G260500 Sobic003G182300 Sobic003G182300 Sobic001G015400--Sobic003G182300 Sobic001G015400--Sobic002G398700 Sobic006G106300 Sobic006G106300 Sobic001G015400--Sobic006G106300 Sobic001G460500--Sobic005G163700 Sobic001G460500--Sobic002G423500 Sobic002G014400 Sobic002G014400 Sobic001G460500--Sobic002G014400 Sobic001G460500--Sobic004G208500 Sobic010G081700 Sobic010G081700 Sobic001G460500--Sobic010G081700 Sobic004G047200 Sobic004G047200 Sobic001G460500--Sobic004G047200 Sobic001G460500--Sobic002G412700 Sobic001G460500--Sobic001G251600 Sobic003G099300 Sobic003G099300 Sobic001G460500--Sobic003G099300 Sobic002G234300 Sobic002G234300 Sobic004G256000--Sobic002G234300 Sobic002G112100 Sobic002G112100 Sobic004G256000--Sobic002G112100 Sobic009G246500 Sobic009G246500 Sobic004G256000--Sobic009G246500 Sobic002G071400 Sobic002G071400 Sobic004G256000--Sobic002G071400 Sobic004G256000--Sobic009G249800 Sobic006G269900 Sobic006G269900 Sobic004G256000--Sobic006G269900 Sobic008G169200 Sobic008G169200 Sobic004G256000--Sobic008G169200 Sobic008G049100 Sobic008G049100 Sobic004G256000--Sobic008G049100 Sobic008G160000 Sobic008G160000 Sobic004G256000--Sobic008G160000
Octagon: transcription factors


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