Gene annotation
Transcriptome id Sobic.010G081700.1
Synonym Sb10g007070
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5Z6G4
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF261
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G71060 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os01g32090.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a049589
Brachypodium KQK04428
Barley HORVU5Hr1G079050.1 , HORVU5Hr1G079050.2 , HORVU5Hr1G079050.3
Wheat -
Populus -


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cDNA sequences
Sobic.010G081700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma
2 Sobic.004G348600 tetratricopeptide repeat containing protein, putative, expressed -
3 Sobic.004G208500 eukaryotic translation initiation factor 2A, putative, expressed K15026: translation initiation factor 2A
4 Sobic.004G322300 nucleotide binding protein, putative, expressed K03351: anaphase-promoting complex subunit 4
5 Sobic.002G398700 tim44-like domain containing protein, expressed K17426: large subunit ribosomal protein L45
6 Sobic.006G106300 - K17675: SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3
7 Sobic.002G408900 adenyl cyclase, putative, expressed -
8 Sobic.004G356200 expressed protein -
9 Sobic.002G150700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
10 Sobic.001G015400 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
11 Sobic.004G137500 expressed protein -
12 Sobic.001G537500 GTP-binding protein, putative, expressed K06944: uncharacterized protein
13 Sobic.009G134900 PPR repeat domain containing protein, putative, expressed -
14 Sobic.005G031000 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed K00225: L-galactono-1,4-lactone dehydrogenase
15 Sobic.009G249800 AARP2CN domain containing protein, expressed K14799: pre-rRNA-processing protein TSR1
16 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
17 Sobic.003G222000 metallo-beta-lactamase, putative, expressed K13148: CPSF3L, integrator complex subunit 11
18 Sobic.003G130900 glucosidase II beta subunit-like domain containing protein, expressed K08288: protein kinase C substrate 80K-H
19 Sobic.003G143800 nodal modulator 1 precursor, putative, expressed -
20 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase


Gene co-expression network
sample Sobic010G081700 Sobic010G081700 Sobic001G460500 Sobic001G460500 Sobic010G081700--Sobic001G460500 Sobic004G348600 Sobic004G348600 Sobic010G081700--Sobic004G348600 Sobic004G208500 Sobic004G208500 Sobic010G081700--Sobic004G208500 Sobic004G322300 Sobic004G322300 Sobic010G081700--Sobic004G322300 Sobic002G398700 Sobic002G398700 Sobic010G081700--Sobic002G398700 Sobic006G106300 Sobic006G106300 Sobic010G081700--Sobic006G106300 Sobic002G408900 Sobic002G408900 Sobic010G081700--Sobic002G408900 Sobic004G356200 Sobic004G356200 Sobic010G081700--Sobic004G356200 Sobic002G150700 Sobic002G150700 Sobic010G081700--Sobic002G150700 Sobic005G163700 Sobic005G163700 Sobic001G460500--Sobic005G163700 Sobic002G423500 Sobic002G423500 Sobic001G460500--Sobic002G423500 Sobic002G014400 Sobic002G014400 Sobic001G460500--Sobic002G014400 Sobic001G460500--Sobic004G208500 Sobic001G460500--Sobic010G081700 Sobic004G047200 Sobic004G047200 Sobic001G460500--Sobic004G047200 Sobic002G412700 Sobic002G412700 Sobic001G460500--Sobic002G412700 Sobic001G251600 Sobic001G251600 Sobic001G460500--Sobic001G251600 Sobic003G099300 Sobic003G099300 Sobic001G460500--Sobic003G099300 Sobic004G137500 Sobic004G137500 Sobic004G348600--Sobic004G137500 Sobic004G348600--Sobic010G081700 Sobic002G071100 Sobic002G071100 Sobic004G348600--Sobic002G071100 Sobic004G174700 Sobic004G174700 Sobic004G348600--Sobic004G174700 Sobic006G265600 Sobic006G265600 Sobic004G348600--Sobic006G265600 Sobic002G367800 Sobic002G367800 Sobic004G348600--Sobic002G367800 Sobic001G004200 Sobic001G004200 Sobic004G348600--Sobic001G004200 Sobic003G130000 Sobic003G130000 Sobic004G348600--Sobic003G130000 Sobic009G041800 Sobic009G041800 Sobic004G348600--Sobic009G041800 Sobic001G467100 Sobic001G467100 Sobic004G208500--Sobic001G467100 Sobic001G099900 Sobic001G099900 Sobic004G208500--Sobic001G099900 Sobic001G015400 Sobic001G015400 Sobic004G208500--Sobic001G015400 Sobic004G208500--Sobic002G408900 Sobic004G208500--Sobic002G150700 Sobic001G161700 Sobic001G161700 Sobic004G208500--Sobic001G161700 Sobic010G223300 Sobic010G223300 Sobic004G208500--Sobic010G223300 Sobic005G110499 Sobic005G110499 Sobic004G208500--Sobic005G110499 Sobic004G208500--Sobic005G163700 Sobic002G371600 Sobic002G371600 Sobic004G322300--Sobic002G371600 Sobic003G388000 Sobic003G388000 Sobic004G322300--Sobic003G388000 Sobic004G315500 Sobic004G315500 Sobic004G322300--Sobic004G315500 Sobic009G134900 Sobic009G134900 Sobic004G322300--Sobic009G134900 Sobic004G322300--Sobic010G081700 Sobic006G178100 Sobic006G178100 Sobic004G322300--Sobic006G178100 Sobic008G111600 Sobic008G111600 Sobic004G322300--Sobic008G111600 Sobic002G160700 Sobic002G160700 Sobic004G322300--Sobic002G160700 Sobic003G306400 Sobic003G306400 Sobic004G322300--Sobic003G306400 Sobic003G304400 Sobic003G304400 Sobic002G398700--Sobic003G304400 Sobic002G398700--Sobic006G106300 Sobic010G091400 Sobic010G091400 Sobic002G398700--Sobic010G091400 Sobic002G398700--Sobic001G015400 Sobic002G398700--Sobic002G150700 Sobic005G026400 Sobic005G026400 Sobic002G398700--Sobic005G026400 Sobic002G398700--Sobic002G408900 Sobic002G386600 Sobic002G386600 Sobic002G398700--Sobic002G386600 Sobic002G364900 Sobic002G364900 Sobic002G398700--Sobic002G364900 Sobic003G409900 Sobic003G409900 Sobic006G106300--Sobic003G409900 Sobic003G021600 Sobic003G021600 Sobic006G106300--Sobic003G021600 Sobic006G106300--Sobic002G398700 Sobic001G097900 Sobic001G097900 Sobic006G106300--Sobic001G097900 Sobic006G106300--Sobic001G015400 Sobic009G254100 Sobic009G254100 Sobic006G106300--Sobic009G254100 Sobic002G301100 Sobic002G301100 Sobic006G106300--Sobic002G301100 Sobic001G474400 Sobic001G474400 Sobic006G106300--Sobic001G474400 Sobic006G106300--Sobic002G364900 Sobic002G408900--Sobic002G150700 Sobic009G249800 Sobic009G249800 Sobic002G408900--Sobic009G249800 Sobic002G408900--Sobic004G208500 Sobic002G246700 Sobic002G246700 Sobic002G408900--Sobic002G246700 Sobic002G408900--Sobic001G015400 Sobic002G408900--Sobic002G398700 Sobic006G193300 Sobic006G193300 Sobic002G408900--Sobic006G193300 Sobic002G408900--Sobic002G160700 Sobic002G408900--Sobic001G099900 Sobic001G200200 Sobic001G200200 Sobic004G356200--Sobic001G200200 Sobic004G356200--Sobic002G371600 Sobic005G031000 Sobic005G031000 Sobic004G356200--Sobic005G031000 Sobic001G248100 Sobic001G248100 Sobic004G356200--Sobic001G248100 Sobic002G137601 Sobic002G137601 Sobic004G356200--Sobic002G137601 Sobic004G356200--Sobic002G160700 Sobic007G047600 Sobic007G047600 Sobic004G356200--Sobic007G047600 Sobic004G030400 Sobic004G030400 Sobic004G356200--Sobic004G030400 Sobic001G085800 Sobic001G085800 Sobic004G356200--Sobic001G085800 Sobic002G150700--Sobic002G408900 Sobic006G002800 Sobic006G002800 Sobic002G150700--Sobic006G002800 Sobic001G455800 Sobic001G455800 Sobic002G150700--Sobic001G455800 Sobic003G146600 Sobic003G146600 Sobic002G150700--Sobic003G146600 Sobic002G150700--Sobic001G099900 Sobic002G150700--Sobic004G208500 Sobic002G150700--Sobic002G398700 Sobic001G145400 Sobic001G145400 Sobic002G150700--Sobic001G145400 Sobic002G150700--Sobic003G304400
Octagon: transcription factors


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