Gene annotation
Transcriptome id Sobic.004G322300.1
Synonym Sb04g035270
Functional annotation nucleotide binding protein, putative, expressed
UniProt C5XTP9
Pfam PF12894 PF12896
Panther DB PTHR13260
NCBI CDD -
KEGG Orthology K03351; anaphase-promoting complex subunit 4
Gene Ontology GO:0005680; anaphase-promoting complex


Orthologs (automatic annotation)
TAIR AT4G21530 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os02g54490.1 : nucleotide binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a049702 , Zm00025a032990
Brachypodium PNT69699 , KQK02073
Barley -
Wheat TraesCS6B02G377000 , TraesCS6B02G377000 , TraesCS6D02G327000 , TraesCSU02G081200 , TraesCSU02G081200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
2 Sobic.003G388000 tetratricopeptide repeat domain containing protein, expressed K03350: APC3, anaphase-promoting complex subunit 3
3 Sobic.004G315500 RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed K10756: replication factor C subunit 3/5
4 Sobic.009G134900 PPR repeat domain containing protein, putative, expressed -
5 Sobic.010G081700 PPR repeat domain containing protein, putative, expressed -
6 Sobic.006G178100 coiled-coil domain-containing protein 139, putative, expressed K07583: tRNA pseudouridine synthase 10
7 Sobic.008G111600 heat shock protein, putative, expressed K09487: HSP90B, heat shock protein 90kDa beta
8 Sobic.002G160700 WD domain, G-beta repeat domain containing protein, expressed K12880: THO complex subunit 3
9 Sobic.003G306400 holliday junction resolvase, putative, expressed K07447: putative holliday junction resolvase
10 Sobic.003G256800 RNA polymerase III subunit RPC82 family protein, putative, expressed K03023: RPC3, DNA-directed RNA polymerase III subunit RPC3
11 Sobic.001G408600 RNA pseudouridine synthase, putative, expressed -
12 Sobic.006G181800 gamma-tubulin complex component 6, putative, expressed K16573: TUBGCP6, gamma-tubulin complex component 6
13 Sobic.002G142700 PPR repeat containing protein, putative, expressed -
14 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
15 Sobic.001G024000 expressed protein K14844: pumilio homology domain family member 6
16 Sobic.004G031300 PPR repeat domain containing protein, putative, expressed -
17 Sobic.003G023200 DNA repair protein Rad51, putative, expressed K10870: RAD51L2, RAD51-like protein 2
18 Sobic.001G488100 OsNucAP1 - Putative Nucleoporin Autopeptidase homologue, expressed K14297: NUP98, ADAR2, nuclear pore complex protein Nup98-Nup96
19 Sobic.004G356200 expressed protein -
20 Sobic.002G381900 expressed protein -


Gene co-expression network
sample Sobic004G322300 Sobic004G322300 Sobic002G371600 Sobic002G371600 Sobic004G322300--Sobic002G371600 Sobic003G388000 Sobic003G388000 Sobic004G322300--Sobic003G388000 Sobic004G315500 Sobic004G315500 Sobic004G322300--Sobic004G315500 Sobic009G134900 Sobic009G134900 Sobic004G322300--Sobic009G134900 Sobic010G081700 Sobic010G081700 Sobic004G322300--Sobic010G081700 Sobic006G178100 Sobic006G178100 Sobic004G322300--Sobic006G178100 Sobic008G111600 Sobic008G111600 Sobic004G322300--Sobic008G111600 Sobic002G160700 Sobic002G160700 Sobic004G322300--Sobic002G160700 Sobic003G306400 Sobic003G306400 Sobic004G322300--Sobic003G306400 Sobic001G373800 Sobic001G373800 Sobic002G371600--Sobic001G373800 Sobic006G029100 Sobic006G029100 Sobic002G371600--Sobic006G029100 Sobic006G245900 Sobic006G245900 Sobic002G371600--Sobic006G245900 Sobic004G356200 Sobic004G356200 Sobic002G371600--Sobic004G356200 Sobic003G308500 Sobic003G308500 Sobic002G371600--Sobic003G308500 Sobic002G371600--Sobic002G160700 Sobic003G052800 Sobic003G052800 Sobic002G371600--Sobic003G052800 Sobic001G451300 Sobic001G451300 Sobic002G371600--Sobic001G451300 Sobic010G262100 Sobic010G262100 Sobic002G371600--Sobic010G262100 Sobic003G388000--Sobic002G371600 Sobic003G388000--Sobic004G322300 Sobic003G388000--Sobic002G160700 Sobic004G030400 Sobic004G030400 Sobic003G388000--Sobic004G030400 Sobic004G177600 Sobic004G177600 Sobic003G388000--Sobic004G177600 Sobic003G396700 Sobic003G396700 Sobic003G388000--Sobic003G396700 Sobic010G188000 Sobic010G188000 Sobic003G388000--Sobic010G188000 Sobic001G340000 Sobic001G340000 Sobic003G388000--Sobic001G340000 Sobic001G475000 Sobic001G475000 Sobic003G388000--Sobic001G475000 Sobic001G488100 Sobic001G488100 Sobic004G315500--Sobic001G488100 Sobic005G010900 Sobic005G010900 Sobic004G315500--Sobic005G010900 Sobic001G373000 Sobic001G373000 Sobic004G315500--Sobic001G373000 Sobic004G315500--Sobic010G188000 Sobic004G315500--Sobic004G322300 Sobic006G137700 Sobic006G137700 Sobic004G315500--Sobic006G137700 Sobic001G239800 Sobic001G239800 Sobic004G315500--Sobic001G239800 Sobic007G089800 Sobic007G089800 Sobic004G315500--Sobic007G089800 Sobic003G123100 Sobic003G123100 Sobic004G315500--Sobic003G123100 Sobic009G134900--Sobic004G322300 Sobic004G357400 Sobic004G357400 Sobic009G134900--Sobic004G357400 Sobic009G134900--Sobic001G488100 Sobic009G134900--Sobic004G315500 Sobic004G224600 Sobic004G224600 Sobic009G134900--Sobic004G224600 Sobic009G134900--Sobic010G081700 Sobic001G015400 Sobic001G015400 Sobic009G134900--Sobic001G015400 Sobic009G134900--Sobic010G188000 Sobic003G230600 Sobic003G230600 Sobic009G134900--Sobic003G230600 Sobic001G460500 Sobic001G460500 Sobic010G081700--Sobic001G460500 Sobic004G348600 Sobic004G348600 Sobic010G081700--Sobic004G348600 Sobic004G208500 Sobic004G208500 Sobic010G081700--Sobic004G208500 Sobic010G081700--Sobic004G322300 Sobic002G398700 Sobic002G398700 Sobic010G081700--Sobic002G398700 Sobic006G106300 Sobic006G106300 Sobic010G081700--Sobic006G106300 Sobic002G408900 Sobic002G408900 Sobic010G081700--Sobic002G408900 Sobic010G081700--Sobic004G356200 Sobic002G150700 Sobic002G150700 Sobic010G081700--Sobic002G150700 Sobic006G178100--Sobic004G224600 Sobic009G254100 Sobic009G254100 Sobic006G178100--Sobic009G254100 Sobic005G108000 Sobic005G108000 Sobic006G178100--Sobic005G108000 Sobic003G143800 Sobic003G143800 Sobic006G178100--Sobic003G143800 Sobic006G125500 Sobic006G125500 Sobic006G178100--Sobic006G125500 Sobic003G146600 Sobic003G146600 Sobic006G178100--Sobic003G146600 Sobic006G178100--Sobic002G371600 Sobic001G408600 Sobic001G408600 Sobic006G178100--Sobic001G408600 Sobic006G178100--Sobic004G322300 Sobic002G426100 Sobic002G426100 Sobic008G111600--Sobic002G426100 Sobic006G181800 Sobic006G181800 Sobic008G111600--Sobic006G181800 Sobic002G362200 Sobic002G362200 Sobic008G111600--Sobic002G362200 Sobic004G215900 Sobic004G215900 Sobic008G111600--Sobic004G215900 Sobic002G043000 Sobic002G043000 Sobic008G111600--Sobic002G043000 Sobic001G024000 Sobic001G024000 Sobic008G111600--Sobic001G024000 Sobic002G078100 Sobic002G078100 Sobic008G111600--Sobic002G078100 Sobic002G003300 Sobic002G003300 Sobic008G111600--Sobic002G003300 Sobic003G144000 Sobic003G144000 Sobic008G111600--Sobic003G144000 Sobic001G151600 Sobic001G151600 Sobic002G160700--Sobic001G151600 Sobic002G160700--Sobic002G371600 Sobic002G160700--Sobic006G029100 Sobic001G248100 Sobic001G248100 Sobic002G160700--Sobic001G248100 Sobic006G265600 Sobic006G265600 Sobic002G160700--Sobic006G265600 Sobic002G199400 Sobic002G199400 Sobic002G160700--Sobic002G199400 Sobic002G160700--Sobic002G408900 Sobic002G160700--Sobic004G030400 Sobic005G115500 Sobic005G115500 Sobic002G160700--Sobic005G115500 Sobic003G306400--Sobic004G322300 Sobic001G191900 Sobic001G191900 Sobic003G306400--Sobic001G191900 Sobic003G129300 Sobic003G129300 Sobic003G306400--Sobic003G129300 Sobic009G113900 Sobic009G113900 Sobic003G306400--Sobic009G113900 Sobic001G027500 Sobic001G027500 Sobic003G306400--Sobic001G027500 Sobic001G039300 Sobic001G039300 Sobic003G306400--Sobic001G039300 Sobic003G306400--Sobic009G254100 Sobic002G116500 Sobic002G116500 Sobic003G306400--Sobic002G116500 Sobic002G208400 Sobic002G208400 Sobic003G306400--Sobic002G208400
Octagon: transcription factors


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