Gene annotation
Transcriptome id Sobic.003G388000.1,Sobic.003G388000.2
Synonym CDC27b, HBT, Sb03g042610
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt A0A1B6Q7I8 , A0A1B6Q7K5
Pfam PF13181 PF12895 PF13414 PF07719 PF12895 PF13181 PF13414 PF07719
Panther DB PTHR12558 PTHR12558:SF13
NCBI CDD -
KEGG Orthology K03350; APC3, anaphase-promoting complex subunit 3
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G20000 : CDC27 family protein
RAP-DB (Rice) LOC_Os06g41750.1 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a026439
Brachypodium KQK17638 , KQK17639 , PNT75628 , PNT75627
Barley HORVU7Hr1G093620.5 , HORVU7Hr1G093620.4 , HORVU7Hr1G093620.19 , HORVU7Hr1G093620.18 , HORVU7Hr1G093620.15 , HORVU7Hr1G093620.14 , HORVU7Hr1G093620.17 , HORVU7Hr1G093620.16 , HORVU7Hr1G093620.11 , HORVU7Hr1G093620.10 , HORVU7Hr1G093620.13 , HORVU7Hr1G093620.12 , HORVU7Hr1G093620.9 , HORVU7Hr1G093620.8 , HORVU7Hr1G093620.3 , HORVU7Hr1G093620.2 , HORVU7Hr1G093620.7 , HORVU7Hr1G093620.6 , HORVU7Hr1G002940.16 , HORVU7Hr1G002940.23 , HORVU7Hr1G002940.25
Wheat TraesCS7A02G398600 , TraesCS7A02G398600 , TraesCS7A02G398600 , TraesCS7D02G392900 , TraesCS7D02G392900 , TraesCS7B02G299300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
2 Sobic.004G322300 nucleotide binding protein, putative, expressed K03351: anaphase-promoting complex subunit 4
3 Sobic.002G160700 WD domain, G-beta repeat domain containing protein, expressed K12880: THO complex subunit 3
4 Sobic.004G030400 expressed protein -
5 Sobic.004G177600 DDT domain containing protein, putative, expressed -
6 Sobic.003G396700 DCL2, putative, expressed K11592: DICER1, endoribonuclease Dicer
7 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
8 Sobic.001G340000 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1
9 Sobic.001G475000 expressed protein -
10 Sobic.001G373800 MIF4G domain containing protein, putative, expressed K12882: NCBP1, nuclear cap-binding protein subunit 1
11 Sobic.006G181800 gamma-tubulin complex component 6, putative, expressed K16573: TUBGCP6, gamma-tubulin complex component 6
12 Sobic.009G003700 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
13 Sobic.001G151600 OsRhmbd9 - Putative Rhomboid homologue, expressed -
14 Sobic.003G023200 DNA repair protein Rad51, putative, expressed K10870: RAD51L2, RAD51-like protein 2
15 Sobic.002G426100 aldehyde dehydrogenase, putative, expressed -
16 Sobic.002G363800 expressed protein -
17 Sobic.003G256800 RNA polymerase III subunit RPC82 family protein, putative, expressed K03023: RPC3, DNA-directed RNA polymerase III subunit RPC3
18 Sobic.006G029100 actin, putative, expressed K11673: ACTR8, ARP8, actin-related protein 8
19 Sobic.004G315500 RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed K10756: replication factor C subunit 3/5
20 Sobic.003G217200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -


Gene co-expression network
sample Sobic003G388000 Sobic003G388000 Sobic002G371600 Sobic002G371600 Sobic003G388000--Sobic002G371600 Sobic004G322300 Sobic004G322300 Sobic003G388000--Sobic004G322300 Sobic002G160700 Sobic002G160700 Sobic003G388000--Sobic002G160700 Sobic004G030400 Sobic004G030400 Sobic003G388000--Sobic004G030400 Sobic004G177600 Sobic004G177600 Sobic003G388000--Sobic004G177600 Sobic003G396700 Sobic003G396700 Sobic003G388000--Sobic003G396700 Sobic010G188000 Sobic010G188000 Sobic003G388000--Sobic010G188000 Sobic001G340000 Sobic001G340000 Sobic003G388000--Sobic001G340000 Sobic001G475000 Sobic001G475000 Sobic003G388000--Sobic001G475000 Sobic001G373800 Sobic001G373800 Sobic002G371600--Sobic001G373800 Sobic006G029100 Sobic006G029100 Sobic002G371600--Sobic006G029100 Sobic006G245900 Sobic006G245900 Sobic002G371600--Sobic006G245900 Sobic004G356200 Sobic004G356200 Sobic002G371600--Sobic004G356200 Sobic003G308500 Sobic003G308500 Sobic002G371600--Sobic003G308500 Sobic002G371600--Sobic002G160700 Sobic003G052800 Sobic003G052800 Sobic002G371600--Sobic003G052800 Sobic001G451300 Sobic001G451300 Sobic002G371600--Sobic001G451300 Sobic010G262100 Sobic010G262100 Sobic002G371600--Sobic010G262100 Sobic004G322300--Sobic002G371600 Sobic004G322300--Sobic003G388000 Sobic004G315500 Sobic004G315500 Sobic004G322300--Sobic004G315500 Sobic009G134900 Sobic009G134900 Sobic004G322300--Sobic009G134900 Sobic010G081700 Sobic010G081700 Sobic004G322300--Sobic010G081700 Sobic006G178100 Sobic006G178100 Sobic004G322300--Sobic006G178100 Sobic008G111600 Sobic008G111600 Sobic004G322300--Sobic008G111600 Sobic004G322300--Sobic002G160700 Sobic003G306400 Sobic003G306400 Sobic004G322300--Sobic003G306400 Sobic001G151600 Sobic001G151600 Sobic002G160700--Sobic001G151600 Sobic002G160700--Sobic002G371600 Sobic002G160700--Sobic006G029100 Sobic001G248100 Sobic001G248100 Sobic002G160700--Sobic001G248100 Sobic006G265600 Sobic006G265600 Sobic002G160700--Sobic006G265600 Sobic002G199400 Sobic002G199400 Sobic002G160700--Sobic002G199400 Sobic002G408900 Sobic002G408900 Sobic002G160700--Sobic002G408900 Sobic002G160700--Sobic004G030400 Sobic005G115500 Sobic005G115500 Sobic002G160700--Sobic005G115500 Sobic004G030400--Sobic002G160700 Sobic004G030400--Sobic004G356200 Sobic001G200200 Sobic001G200200 Sobic004G030400--Sobic001G200200 Sobic004G030400--Sobic002G199400 Sobic001G123600 Sobic001G123600 Sobic004G030400--Sobic001G123600 Sobic002G142700 Sobic002G142700 Sobic004G030400--Sobic002G142700 Sobic002G208400 Sobic002G208400 Sobic004G030400--Sobic002G208400 Sobic004G030400--Sobic003G388000 Sobic002G386600 Sobic002G386600 Sobic004G030400--Sobic002G386600 Sobic010G233000 Sobic010G233000 Sobic004G177600--Sobic010G233000 Sobic004G177600--Sobic003G388000 Sobic003G221500 Sobic003G221500 Sobic004G177600--Sobic003G221500 Sobic004G339700 Sobic004G339700 Sobic004G177600--Sobic004G339700 Sobic008G063600 Sobic008G063600 Sobic004G177600--Sobic008G063600 Sobic004G256300 Sobic004G256300 Sobic004G177600--Sobic004G256300 Sobic004G307900 Sobic004G307900 Sobic004G177600--Sobic004G307900 Sobic001G462600 Sobic001G462600 Sobic004G177600--Sobic001G462600 Sobic004G177600--Sobic004G322300 Sobic003G129500 Sobic003G129500 Sobic003G396700--Sobic003G129500 Sobic003G396700--Sobic003G388000 Sobic003G396700--Sobic008G063600 Sobic002G043000 Sobic002G043000 Sobic003G396700--Sobic002G043000 Sobic006G192332 Sobic006G192332 Sobic003G396700--Sobic006G192332 Sobic003G396700--Sobic008G111600 Sobic002G426100 Sobic002G426100 Sobic003G396700--Sobic002G426100 Sobic006G181800 Sobic006G181800 Sobic003G396700--Sobic006G181800 Sobic002G078100 Sobic002G078100 Sobic003G396700--Sobic002G078100 Sobic001G373000 Sobic001G373000 Sobic010G188000--Sobic001G373000 Sobic004G038100 Sobic004G038100 Sobic010G188000--Sobic004G038100 Sobic010G188000--Sobic002G371600 Sobic010G188000--Sobic006G181800 Sobic010G188000--Sobic001G451300 Sobic010G188000--Sobic002G160700 Sobic010G188000--Sobic004G315500 Sobic005G010900 Sobic005G010900 Sobic010G188000--Sobic005G010900 Sobic010G236600 Sobic010G236600 Sobic010G188000--Sobic010G236600 Sobic005G061900 Sobic005G061900 Sobic001G340000--Sobic005G061900 Sobic003G043000 Sobic003G043000 Sobic001G340000--Sobic003G043000 Sobic002G363800 Sobic002G363800 Sobic001G340000--Sobic002G363800 Sobic003G256800 Sobic003G256800 Sobic001G340000--Sobic003G256800 Sobic004G265500 Sobic004G265500 Sobic001G340000--Sobic004G265500 Sobic001G030000 Sobic001G030000 Sobic001G340000--Sobic001G030000 Sobic003G163200 Sobic003G163200 Sobic001G340000--Sobic003G163200 Sobic006G026250 Sobic006G026250 Sobic001G340000--Sobic006G026250 Sobic010G273300 Sobic010G273300 Sobic001G340000--Sobic010G273300 Sobic003G023200 Sobic003G023200 Sobic001G475000--Sobic003G023200 Sobic001G475000--Sobic006G192332 Sobic001G475200 Sobic001G475200 Sobic001G475000--Sobic001G475200 Sobic001G475000--Sobic003G388000 Sobic007G154350 Sobic007G154350 Sobic001G475000--Sobic007G154350 Sobic010G002800 Sobic010G002800 Sobic001G475000--Sobic010G002800 Sobic003G166500 Sobic003G166500 Sobic001G475000--Sobic003G166500 Sobic002G076500 Sobic002G076500 Sobic001G475000--Sobic002G076500 Sobic001G097900 Sobic001G097900 Sobic001G475000--Sobic001G097900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.