Gene annotation
Transcriptome id Sobic.001G340000.3
Synonym HUB2
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1Z5S9J7
Pfam PF13920
Panther DB PTHR23163 PTHR23163:SF0
NCBI CDD KOG0978; E3 ubiquitin ligase involved in syntaxin degradation
KEGG Orthology K10696; E3 ubiquitin-protein ligase BRE1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G55250 : histone mono-ubiquitination 2
RAP-DB (Rice) LOC_Os10g41590.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a002831
Brachypodium KQK07125 , KQK07124
Barley -
Wheat TraesCS3D02G462600 , TraesCS3D02G466100 , TraesCS3D02G466100 , TraesCS3D02G466100 , TraesCS3D02G466100 , TraesCS3D02G466100 , TraesCS3B02G511800 , TraesCS3B02G511800 , TraesCS3A02G467300 , TraesCS3A02G467300 , TraesCS3A02G467300 , TraesCS3D02G462600 , TraesCS3D02G462600 , TraesCS3D02G462600 , TraesCS3D02G462600 , TraesCS3D02G462600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G061900 - K10896: fanconi anemia group M protein
2 Sobic.003G043000 expressed protein -
3 Sobic.002G363800 expressed protein -
4 Sobic.003G256800 RNA polymerase III subunit RPC82 family protein, putative, expressed K03023: RPC3, DNA-directed RNA polymerase III subunit RPC3
5 Sobic.004G265500 SET domain protein SDG117, putative, expressed -
6 Sobic.001G030000 FG-GAP repeat-containing protein, putative, expressed -
7 Sobic.003G163200 expressed protein K11654: SMARCA5, SNF2H, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
8 Sobic.006G026250 - -
9 Sobic.010G273300 Leucine Rich Repeat family protein, expressed -
10 Sobic.006G184900 tetratricopeptide repeat domain containing protein, expressed K15176: RNA polymerase-associated protein CTR9
11 Sobic.003G012000 GTPase of unknown function domain containing protein, putative, expressed -
12 Sobic.003G241700 SET domain containing protein, expressed -
13 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1
14 Sobic.004G213800 expressed protein -
15 Sobic.001G255800 CPuORF15 - conserved peptide uORF-containing transcript, expressed -
16 Sobic.007G155500 pentatricopeptide containing protein, putative, expressed -
17 Sobic.002G374300 FAR1 family protein, expressed K17604: zinc finger SWIM domain-containing protein 3
18 Sobic.003G388000 tetratricopeptide repeat domain containing protein, expressed K03350: APC3, anaphase-promoting complex subunit 3
19 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
20 Sobic.010G244900 auxin efflux carrier, putative, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial


Gene co-expression network
sample Sobic001G340000 Sobic001G340000 Sobic005G061900 Sobic005G061900 Sobic001G340000--Sobic005G061900 Sobic003G043000 Sobic003G043000 Sobic001G340000--Sobic003G043000 Sobic002G363800 Sobic002G363800 Sobic001G340000--Sobic002G363800 Sobic003G256800 Sobic003G256800 Sobic001G340000--Sobic003G256800 Sobic004G265500 Sobic004G265500 Sobic001G340000--Sobic004G265500 Sobic001G030000 Sobic001G030000 Sobic001G340000--Sobic001G030000 Sobic003G163200 Sobic003G163200 Sobic001G340000--Sobic003G163200 Sobic006G026250 Sobic006G026250 Sobic001G340000--Sobic006G026250 Sobic010G273300 Sobic010G273300 Sobic001G340000--Sobic010G273300 Sobic005G061900--Sobic001G340000 Sobic004G213800 Sobic004G213800 Sobic005G061900--Sobic004G213800 Sobic004G053500 Sobic004G053500 Sobic005G061900--Sobic004G053500 Sobic005G061900--Sobic010G273300 Sobic001G450000 Sobic001G450000 Sobic005G061900--Sobic001G450000 Sobic003G388000 Sobic003G388000 Sobic005G061900--Sobic003G388000 Sobic002G371600 Sobic002G371600 Sobic005G061900--Sobic002G371600 Sobic010G205600 Sobic010G205600 Sobic005G061900--Sobic010G205600 Sobic005G061900--Sobic003G163200 Sobic003G043000--Sobic004G265500 Sobic001G308400 Sobic001G308400 Sobic003G043000--Sobic001G308400 Sobic003G296900 Sobic003G296900 Sobic003G043000--Sobic003G296900 Sobic004G357100 Sobic004G357100 Sobic003G043000--Sobic004G357100 Sobic003G241700 Sobic003G241700 Sobic003G043000--Sobic003G241700 Sobic009G228000 Sobic009G228000 Sobic003G043000--Sobic009G228000 SobicK028600 SobicK028600 Sobic003G043000--SobicK028600 Sobic003G043000--Sobic003G163200 Sobic002G227500 Sobic002G227500 Sobic003G043000--Sobic002G227500 Sobic002G296400 Sobic002G296400 Sobic002G363800--Sobic002G296400 Sobic002G363800--Sobic002G371600 Sobic001G125500 Sobic001G125500 Sobic002G363800--Sobic001G125500 Sobic001G097900 Sobic001G097900 Sobic002G363800--Sobic001G097900 Sobic002G363800--Sobic003G256800 Sobic008G092800 Sobic008G092800 Sobic002G363800--Sobic008G092800 Sobic007G145400 Sobic007G145400 Sobic002G363800--Sobic007G145400 Sobic002G363800--Sobic001G340000 Sobic003G230600 Sobic003G230600 Sobic002G363800--Sobic003G230600 Sobic009G254100 Sobic009G254100 Sobic003G256800--Sobic009G254100 Sobic003G256800--Sobic002G227500 Sobic003G021600 Sobic003G021600 Sobic003G256800--Sobic003G021600 Sobic003G012000 Sobic003G012000 Sobic003G256800--Sobic003G012000 Sobic006G029100 Sobic006G029100 Sobic003G256800--Sobic006G029100 Sobic003G256800--Sobic002G296400 Sobic003G256800--Sobic002G363800 Sobic003G256800--Sobic001G097900 Sobic002G398700 Sobic002G398700 Sobic003G256800--Sobic002G398700 Sobic004G265500--Sobic003G043000 Sobic004G265500--Sobic003G163200 Sobic004G265500--Sobic001G308400 Sobic004G265500--Sobic004G357100 Sobic010G000800 Sobic010G000800 Sobic004G265500--Sobic010G000800 Sobic002G042600 Sobic002G042600 Sobic004G265500--Sobic002G042600 Sobic004G265500--Sobic004G053500 Sobic004G265500--SobicK028600 Sobic004G265500--Sobic002G227500 Sobic001G030000--Sobic001G308400 Sobic004G141800 Sobic004G141800 Sobic001G030000--Sobic004G141800 Sobic010G169900 Sobic010G169900 Sobic001G030000--Sobic010G169900 Sobic001G030000--Sobic003G043000 Sobic001G030000--Sobic004G265500 Sobic001G030000--Sobic002G227500 Sobic005G110499 Sobic005G110499 Sobic001G030000--Sobic005G110499 Sobic003G405500 Sobic003G405500 Sobic001G030000--Sobic003G405500 Sobic001G030000--Sobic003G163200 Sobic003G163200--Sobic004G265500 Sobic003G163200--Sobic002G042600 Sobic003G163200--Sobic010G000800 Sobic003G163200--Sobic003G043000 Sobic002G179400 Sobic002G179400 Sobic003G163200--Sobic002G179400 Sobic010G223100 Sobic010G223100 Sobic003G163200--Sobic010G223100 Sobic002G429300 Sobic002G429300 Sobic003G163200--Sobic002G429300 Sobic006G184900 Sobic006G184900 Sobic003G163200--Sobic006G184900 Sobic004G204100 Sobic004G204100 Sobic003G163200--Sobic004G204100 Sobic003G308500 Sobic003G308500 Sobic006G026250--Sobic003G308500 Sobic006G026250--Sobic001G340000 Sobic009G255700 Sobic009G255700 Sobic006G026250--Sobic009G255700 Sobic006G026250--Sobic003G296900 Sobic003G441900 Sobic003G441900 Sobic006G026250--Sobic003G441900 Sobic001G065100 Sobic001G065100 Sobic006G026250--Sobic001G065100 Sobic003G120300 Sobic003G120300 Sobic006G026250--Sobic003G120300 Sobic003G095900 Sobic003G095900 Sobic006G026250--Sobic003G095900 Sobic006G125500 Sobic006G125500 Sobic006G026250--Sobic006G125500 Sobic008G044900 Sobic008G044900 Sobic010G273300--Sobic008G044900 Sobic008G021400 Sobic008G021400 Sobic010G273300--Sobic008G021400 Sobic010G273300--Sobic010G205600 Sobic001G475100 Sobic001G475100 Sobic010G273300--Sobic001G475100 Sobic007G188800 Sobic007G188800 Sobic010G273300--Sobic007G188800 Sobic010G273300--Sobic001G340000 Sobic010G121100 Sobic010G121100 Sobic010G273300--Sobic010G121100 Sobic010G273300--Sobic005G061900 Sobic005G188300 Sobic005G188300 Sobic010G273300--Sobic005G188300
Octagon: transcription factors


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