Gene annotation
Transcriptome id Sobic.004G213800.1
Synonym Sb04g025910
Functional annotation expressed protein
UniProt C5XXM2
Pfam PF00917
Panther DB PTHR24007 PTHR24007:SF6
NCBI CDD KOG1987; Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G25320 : TRAF-like family protein
RAP-DB (Rice) LOC_Os02g39990.1 : expressed protein
MaizeGDB (Corn) Zm00025a031945
Brachypodium KQK00320
Barley HORVU0Hr1G016000.5 , HORVU0Hr1G016000.4 , HORVU0Hr1G016000.1 , HORVU0Hr1G016000.3 , HORVU0Hr1G016000.2
Wheat TraesCS6D02G204500 , TraesCS6A02G230500 , TraesCS6B02G251400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G241700 SET domain containing protein, expressed -
2 Sobic.001G151100 CCR4-NOT transcription factor, putative, expressed K12580: CNOT3, CCR4-NOT transcription complex subunit 3
3 Sobic.010G244900 auxin efflux carrier, putative, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
4 Sobic.009G228000 ubiquitin-conjugating enzyme domain containing protein, expressed K10581: ubiquitin-conjugating enzyme E2 O
5 Sobic.003G296900 expressed protein -
6 Sobic.003G043000 expressed protein -
7 Sobic.005G167700 protein phosphatase 2C, putative, expressed -
8 Sobic.001G275300 - K10899: ATP-dependent DNA helicase Q1
9 Sobic.007G000300 expressed protein -
10 Sobic.002G374300 FAR1 family protein, expressed K17604: zinc finger SWIM domain-containing protein 3
11 Sobic.001G058200 PPR repeat domain containing protein, putative, expressed -
12 Sobic.004G172500 expressed protein -
13 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1
14 Sobic.001G087600 ZOS9-03 - C2H2 zinc finger protein, expressed -
15 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
16 Sobic.009G107300 3\'-5\' exonuclease, putative, expressed -
17 Sobic.003G012000 GTPase of unknown function domain containing protein, putative, expressed -
18 Sobic.005G061900 - K10896: fanconi anemia group M protein
19 Sobic.008G140700 RNA recognition motif containing protein, putative, expressed -
20 Sobic.006G093300 expressed protein K02519: infB, translation initiation factor IF-2


Gene co-expression network
sample Sobic004G213800 Sobic004G213800 Sobic003G241700 Sobic003G241700 Sobic004G213800--Sobic003G241700 Sobic001G151100 Sobic001G151100 Sobic004G213800--Sobic001G151100 Sobic010G244900 Sobic010G244900 Sobic004G213800--Sobic010G244900 Sobic009G228000 Sobic009G228000 Sobic004G213800--Sobic009G228000 Sobic003G296900 Sobic003G296900 Sobic004G213800--Sobic003G296900 Sobic003G043000 Sobic003G043000 Sobic004G213800--Sobic003G043000 Sobic005G167700 Sobic005G167700 Sobic004G213800--Sobic005G167700 Sobic001G275300 Sobic001G275300 Sobic004G213800--Sobic001G275300 Sobic007G000300 Sobic007G000300 Sobic004G213800--Sobic007G000300 Sobic003G241700--Sobic003G043000 Sobic003G241700--Sobic003G296900 Sobic003G241700--Sobic009G228000 Sobic004G209700 Sobic004G209700 Sobic003G241700--Sobic004G209700 Sobic004G265500 Sobic004G265500 Sobic003G241700--Sobic004G265500 Sobic010G000800 Sobic010G000800 Sobic003G241700--Sobic010G000800 Sobic006G234700 Sobic006G234700 Sobic003G241700--Sobic006G234700 Sobic003G241700--Sobic004G213800 Sobic010G034100 Sobic010G034100 Sobic003G241700--Sobic010G034100 Sobic001G058200 Sobic001G058200 Sobic001G151100--Sobic001G058200 Sobic001G433800 Sobic001G433800 Sobic001G151100--Sobic001G433800 Sobic001G151100--Sobic005G167700 Sobic001G087600 Sobic001G087600 Sobic001G151100--Sobic001G087600 Sobic002G308700 Sobic002G308700 Sobic001G151100--Sobic002G308700 Sobic005G162500 Sobic005G162500 Sobic001G151100--Sobic005G162500 Sobic002G133300 Sobic002G133300 Sobic001G151100--Sobic002G133300 Sobic001G542400 Sobic001G542400 Sobic001G151100--Sobic001G542400 Sobic004G248600 Sobic004G248600 Sobic001G151100--Sobic004G248600 Sobic004G172500 Sobic004G172500 Sobic010G244900--Sobic004G172500 Sobic002G292900 Sobic002G292900 Sobic010G244900--Sobic002G292900 Sobic010G244900--Sobic004G213800 Sobic001G237600 Sobic001G237600 Sobic010G244900--Sobic001G237600 Sobic004G320700 Sobic004G320700 Sobic010G244900--Sobic004G320700 Sobic006G039400 Sobic006G039400 Sobic010G244900--Sobic006G039400 Sobic010G244900--Sobic003G043000 Sobic010G244900--Sobic003G241700 Sobic005G150600 Sobic005G150600 Sobic010G244900--Sobic005G150600 Sobic009G107300 Sobic009G107300 Sobic009G228000--Sobic009G107300 Sobic009G228000--Sobic003G043000 Sobic004G240400 Sobic004G240400 Sobic009G228000--Sobic004G240400 Sobic009G228000--Sobic003G241700 Sobic003G363700 Sobic003G363700 Sobic009G228000--Sobic003G363700 Sobic002G063900 Sobic002G063900 Sobic009G228000--Sobic002G063900 Sobic003G297500 Sobic003G297500 Sobic009G228000--Sobic003G297500 Sobic009G228000--Sobic004G209700 Sobic009G228000--Sobic006G234700 Sobic003G296900--Sobic003G043000 Sobic001G065100 Sobic001G065100 Sobic003G296900--Sobic001G065100 Sobic004G053500 Sobic004G053500 Sobic003G296900--Sobic004G053500 Sobic003G308500 Sobic003G308500 Sobic003G296900--Sobic003G308500 Sobic003G296900--Sobic004G265500 Sobic003G296900--Sobic003G241700 Sobic001G255800 Sobic001G255800 Sobic003G296900--Sobic001G255800 Sobic003G296900--Sobic010G000800 Sobic004G131300 Sobic004G131300 Sobic003G296900--Sobic004G131300 Sobic003G043000--Sobic004G265500 Sobic001G308400 Sobic001G308400 Sobic003G043000--Sobic001G308400 Sobic003G043000--Sobic003G296900 Sobic004G357100 Sobic004G357100 Sobic003G043000--Sobic004G357100 Sobic003G043000--Sobic003G241700 Sobic003G043000--Sobic009G228000 SobicK028600 SobicK028600 Sobic003G043000--SobicK028600 Sobic003G163200 Sobic003G163200 Sobic003G043000--Sobic003G163200 Sobic002G227500 Sobic002G227500 Sobic003G043000--Sobic002G227500 Sobic010G123600 Sobic010G123600 Sobic005G167700--Sobic010G123600 Sobic003G441900 Sobic003G441900 Sobic005G167700--Sobic003G441900 Sobic005G167700--Sobic001G433800 Sobic003G168100 Sobic003G168100 Sobic005G167700--Sobic003G168100 Sobic005G167700--Sobic001G151100 Sobic004G158400 Sobic004G158400 Sobic005G167700--Sobic004G158400 Sobic003G188400 Sobic003G188400 Sobic005G167700--Sobic003G188400 Sobic010G126000 Sobic010G126000 Sobic005G167700--Sobic010G126000 Sobic003G360400 Sobic003G360400 Sobic005G167700--Sobic003G360400 Sobic006G088200 Sobic006G088200 Sobic001G275300--Sobic006G088200 Sobic003G214600 Sobic003G214600 Sobic001G275300--Sobic003G214600 Sobic001G275300--Sobic007G000300 Sobic003G095900 Sobic003G095900 Sobic001G275300--Sobic003G095900 Sobic006G056700 Sobic006G056700 Sobic001G275300--Sobic006G056700 Sobic001G275300--Sobic004G158400 Sobic001G275300--Sobic001G058200 Sobic007G159900 Sobic007G159900 Sobic001G275300--Sobic007G159900 Sobic001G275300--Sobic005G167700 Sobic007G000300--Sobic001G275300 Sobic007G000300--Sobic003G241700 Sobic001G393900 Sobic001G393900 Sobic007G000300--Sobic001G393900 Sobic007G000300--Sobic006G088200 Sobic003G062300 Sobic003G062300 Sobic007G000300--Sobic003G062300 Sobic003G016900 Sobic003G016900 Sobic007G000300--Sobic003G016900 Sobic001G261900 Sobic001G261900 Sobic007G000300--Sobic001G261900 Sobic007G212300 Sobic007G212300 Sobic007G000300--Sobic007G212300 Sobic007G173500 Sobic007G173500 Sobic007G000300--Sobic007G173500
Octagon: transcription factors


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