Gene annotation
Transcriptome id Sobic.001G151100.2,Sobic.001G151100.1
Synonym Sb01g013110
Functional annotation CCR4-NOT transcription factor, putative, expressed
UniProt A0A1B6QJ43 , A0A1B6QJ18
Pfam PF04153 PF04065
Panther DB PTHR23326 PTHR23326:SF1
NCBI CDD KOG2150; CCR4-NOT transcriptional regulation complex, NOT5 subunit
KEGG Orthology K12580; CNOT3, CCR4-NOT transcription complex subunit 3
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT5G18230 : transcription regulator NOT2/NOT3/NOT5 family protein
RAP-DB (Rice) LOC_Os03g44900.1 : CCR4-NOT transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a017217 , Zm00025a007574
Brachypodium KQK13929 , KQK13930
Barley HORVU0Hr1G007630.2 , HORVU0Hr1G025460.1 , HORVU4Hr1G002170.4 , HORVU4Hr1G002170.5 , HORVU4Hr1G002170.6 , HORVU4Hr1G002170.7 , HORVU4Hr1G002170.8 , HORVU4Hr1G002170.9 , HORVU7Hr1G044730.1 , HORVU0Hr1G007630.1 , HORVU4Hr1G002170.1 , HORVU4Hr1G002170.2 , HORVU4Hr1G002170.18 , HORVU4Hr1G002170.3 , HORVU4Hr1G002170.12 , HORVU4Hr1G002170.13 , HORVU4Hr1G002170.10 , HORVU4Hr1G002170.11 , HORVU4Hr1G002170.16 , HORVU4Hr1G002170.17 , HORVU4Hr1G002170.14 , HORVU4Hr1G002170.15
Wheat TraesCS4A02G300300 , TraesCS4A02G300300 , TraesCS4A02G300300 , TraesCS3B02G223500 , TraesCS4B02G013500 , TraesCS4D02G011300 , TraesCS4B02G013500 , TraesCS4B02G013500 , TraesCS4B02G013500 , TraesCS4B02G013500 , TraesCS4D02G011300 , TraesCS4D02G011300 , TraesCS4D02G011300 , TraesCS4D02G011300 , TraesCS4A02G300300 , TraesCS4A02G300300 , TraesCS3B02G339900 , TraesCS4A02G300300 , TraesCS4A02G300300 , TraesCS2A02G557500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G058200 PPR repeat domain containing protein, putative, expressed -
2 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
3 Sobic.005G167700 protein phosphatase 2C, putative, expressed -
4 Sobic.001G087600 ZOS9-03 - C2H2 zinc finger protein, expressed -
5 Sobic.002G308700 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
6 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
7 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
8 Sobic.001G542400 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1
9 Sobic.004G248600 expressed protein K15166: mediator of RNA polymerase II transcription subunit 23
10 Sobic.003G441900 Leucine Rich Repeat family protein, expressed -
11 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
12 Sobic.003G168100 BZIP protein, putative, expressed -
13 Sobic.009G256300 DNA binding protein, putative, expressed -
14 Sobic.008G082500 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
15 Sobic.004G334300 ATMAK10, putative, expressed -
16 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
17 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
18 Sobic.001G457800 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K18663: activating signal cointegrator complex subunit 3
19 Sobic.004G131300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
20 Sobic.004G185800 expressed protein -


Gene co-expression network
sample Sobic001G151100 Sobic001G151100 Sobic001G058200 Sobic001G058200 Sobic001G151100--Sobic001G058200 Sobic001G433800 Sobic001G433800 Sobic001G151100--Sobic001G433800 Sobic005G167700 Sobic005G167700 Sobic001G151100--Sobic005G167700 Sobic001G087600 Sobic001G087600 Sobic001G151100--Sobic001G087600 Sobic002G308700 Sobic002G308700 Sobic001G151100--Sobic002G308700 Sobic005G162500 Sobic005G162500 Sobic001G151100--Sobic005G162500 Sobic002G133300 Sobic002G133300 Sobic001G151100--Sobic002G133300 Sobic001G542400 Sobic001G542400 Sobic001G151100--Sobic001G542400 Sobic004G248600 Sobic004G248600 Sobic001G151100--Sobic004G248600 Sobic001G058200--Sobic001G151100 Sobic001G058200--Sobic005G162500 Sobic001G058200--Sobic001G542400 Sobic001G058200--Sobic002G133300 Sobic008G082500 Sobic008G082500 Sobic001G058200--Sobic008G082500 Sobic004G131300 Sobic004G131300 Sobic001G058200--Sobic004G131300 Sobic001G058200--Sobic004G248600 Sobic003G214600 Sobic003G214600 Sobic001G058200--Sobic003G214600 Sobic001G058200--Sobic001G087600 Sobic010G112100 Sobic010G112100 Sobic001G433800--Sobic010G112100 Sobic003G360400 Sobic003G360400 Sobic001G433800--Sobic003G360400 Sobic007G063000 Sobic007G063000 Sobic001G433800--Sobic007G063000 Sobic005G112300 Sobic005G112300 Sobic001G433800--Sobic005G112300 Sobic004G242400 Sobic004G242400 Sobic001G433800--Sobic004G242400 Sobic001G433800--Sobic002G133300 Sobic001G363500 Sobic001G363500 Sobic001G433800--Sobic001G363500 Sobic006G252900 Sobic006G252900 Sobic001G433800--Sobic006G252900 Sobic006G041600 Sobic006G041600 Sobic001G433800--Sobic006G041600 Sobic010G123600 Sobic010G123600 Sobic005G167700--Sobic010G123600 Sobic003G441900 Sobic003G441900 Sobic005G167700--Sobic003G441900 Sobic005G167700--Sobic001G433800 Sobic003G168100 Sobic003G168100 Sobic005G167700--Sobic003G168100 Sobic005G167700--Sobic001G151100 Sobic004G158400 Sobic004G158400 Sobic005G167700--Sobic004G158400 Sobic003G188400 Sobic003G188400 Sobic005G167700--Sobic003G188400 Sobic010G126000 Sobic010G126000 Sobic005G167700--Sobic010G126000 Sobic005G167700--Sobic003G360400 Sobic001G087600--Sobic001G151100 Sobic001G461400 Sobic001G461400 Sobic001G087600--Sobic001G461400 Sobic001G020000 Sobic001G020000 Sobic001G087600--Sobic001G020000 Sobic002G145800 Sobic002G145800 Sobic001G087600--Sobic002G145800 Sobic002G154000 Sobic002G154000 Sobic001G087600--Sobic002G154000 Sobic003G416700 Sobic003G416700 Sobic001G087600--Sobic003G416700 Sobic002G430300 Sobic002G430300 Sobic001G087600--Sobic002G430300 Sobic001G087600--Sobic005G167700 Sobic002G371700 Sobic002G371700 Sobic001G087600--Sobic002G371700 Sobic003G186000 Sobic003G186000 Sobic002G308700--Sobic003G186000 Sobic004G276400 Sobic004G276400 Sobic002G308700--Sobic004G276400 Sobic002G308700--Sobic005G162500 Sobic010G105200 Sobic010G105200 Sobic002G308700--Sobic010G105200 Sobic004G334300 Sobic004G334300 Sobic002G308700--Sobic004G334300 Sobic002G308700--Sobic002G133300 Sobic001G457800 Sobic001G457800 Sobic002G308700--Sobic001G457800 Sobic002G308700--Sobic001G151100 Sobic002G316600 Sobic002G316600 Sobic002G308700--Sobic002G316600 Sobic001G493700 Sobic001G493700 Sobic005G162500--Sobic001G493700 Sobic002G429300 Sobic002G429300 Sobic005G162500--Sobic002G429300 Sobic001G370900 Sobic001G370900 Sobic005G162500--Sobic001G370900 Sobic009G131300 Sobic009G131300 Sobic005G162500--Sobic009G131300 Sobic008G088872 Sobic008G088872 Sobic005G162500--Sobic008G088872 Sobic005G162500--Sobic003G186000 Sobic008G098900 Sobic008G098900 Sobic005G162500--Sobic008G098900 Sobic005G162500--Sobic004G276400 Sobic002G335600 Sobic002G335600 Sobic005G162500--Sobic002G335600 Sobic002G133300--Sobic004G276400 Sobic002G133300--Sobic001G433800 Sobic001G004400 Sobic001G004400 Sobic002G133300--Sobic001G004400 Sobic001G289800 Sobic001G289800 Sobic002G133300--Sobic001G289800 Sobic003G072200 Sobic003G072200 Sobic002G133300--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic002G133300--Sobic002G397500 Sobic002G133300--Sobic004G131300 Sobic001G194200 Sobic001G194200 Sobic002G133300--Sobic001G194200 Sobic002G133300--Sobic001G493700 Sobic001G299700 Sobic001G299700 Sobic001G542400--Sobic001G299700 Sobic009G109200 Sobic009G109200 Sobic001G542400--Sobic009G109200 Sobic001G400500 Sobic001G400500 Sobic001G542400--Sobic001G400500 Sobic009G256300 Sobic009G256300 Sobic001G542400--Sobic009G256300 Sobic001G542400--Sobic010G112100 Sobic001G542400--Sobic004G276400 Sobic001G542400--Sobic010G105200 Sobic005G008800 Sobic005G008800 Sobic001G542400--Sobic005G008800 Sobic008G001200 Sobic008G001200 Sobic001G542400--Sobic008G001200 Sobic004G248600--Sobic009G109200 Sobic004G248600--Sobic001G004400 Sobic004G248600--Sobic002G133300 Sobic004G248600--Sobic003G072200 Sobic003G312100 Sobic003G312100 Sobic004G248600--Sobic003G312100 Sobic004G248600--Sobic003G186000 Sobic004G248600--Sobic004G276400 Sobic004G248600--Sobic002G397500 Sobic004G248600--Sobic005G162500
Octagon: transcription factors


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