Gene annotation
Transcriptome id Sobic.002G308700.1
Synonym PKR1, CHR4
Functional annotation expressed protein
UniProt A0A1B6QEB1
Pfam PF04851 PF00628 PF06465 PF00385 PF00271
Panther DB PTHR10799 PTHR10799:SF625
NCBI CDD KOG0383; Predicted helicase
KEGG Orthology K11643; CHD4, chromodomain-helicase-DNA-binding protein 4
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G44800 : chromatin remodeling 4
RAP-DB (Rice) LOC_Os07g31450.1 : CHR4/MI-2-LIKE, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK16131
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
2 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
3 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
4 Sobic.010G105200 SYD, putative, expressed -
5 Sobic.004G334300 ATMAK10, putative, expressed -
6 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
7 Sobic.001G457800 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K18663: activating signal cointegrator complex subunit 3
8 Sobic.001G151100 CCR4-NOT transcription factor, putative, expressed K12580: CNOT3, CCR4-NOT transcription complex subunit 3
9 Sobic.002G316600 expressed protein -
10 Sobic.010G169600 OsCML2 - Calmodulin-related calcium sensor protein, expressed -
11 Sobic.009G256300 DNA binding protein, putative, expressed -
12 Sobic.009G255700 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
13 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
14 Sobic.001G299700 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1
15 Sobic.003G101700 dnaJ domain containing protein, expressed -
16 Sobic.001G542400 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1
17 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
18 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
19 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
20 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR


Gene co-expression network
sample Sobic002G308700 Sobic002G308700 Sobic003G186000 Sobic003G186000 Sobic002G308700--Sobic003G186000 Sobic004G276400 Sobic004G276400 Sobic002G308700--Sobic004G276400 Sobic005G162500 Sobic005G162500 Sobic002G308700--Sobic005G162500 Sobic010G105200 Sobic010G105200 Sobic002G308700--Sobic010G105200 Sobic004G334300 Sobic004G334300 Sobic002G308700--Sobic004G334300 Sobic002G133300 Sobic002G133300 Sobic002G308700--Sobic002G133300 Sobic001G457800 Sobic001G457800 Sobic002G308700--Sobic001G457800 Sobic001G151100 Sobic001G151100 Sobic002G308700--Sobic001G151100 Sobic002G316600 Sobic002G316600 Sobic002G308700--Sobic002G316600 Sobic003G186000--Sobic004G276400 Sobic003G186000--Sobic010G105200 Sobic010G010700 Sobic010G010700 Sobic003G186000--Sobic010G010700 Sobic005G001000 Sobic005G001000 Sobic003G186000--Sobic005G001000 Sobic003G205200 Sobic003G205200 Sobic003G186000--Sobic003G205200 Sobic001G194200 Sobic001G194200 Sobic003G186000--Sobic001G194200 Sobic007G062800 Sobic007G062800 Sobic003G186000--Sobic007G062800 Sobic008G001200 Sobic008G001200 Sobic003G186000--Sobic008G001200 Sobic007G103100 Sobic007G103100 Sobic003G186000--Sobic007G103100 Sobic004G276400--Sobic003G186000 Sobic004G276400--Sobic010G010700 Sobic004G276400--Sobic010G105200 Sobic004G276400--Sobic001G194200 Sobic004G034900 Sobic004G034900 Sobic004G276400--Sobic004G034900 Sobic004G276400--Sobic007G062800 Sobic004G291900 Sobic004G291900 Sobic004G276400--Sobic004G291900 Sobic004G242400 Sobic004G242400 Sobic004G276400--Sobic004G242400 Sobic004G276400--Sobic008G001200 Sobic001G493700 Sobic001G493700 Sobic005G162500--Sobic001G493700 Sobic002G429300 Sobic002G429300 Sobic005G162500--Sobic002G429300 Sobic001G370900 Sobic001G370900 Sobic005G162500--Sobic001G370900 Sobic009G131300 Sobic009G131300 Sobic005G162500--Sobic009G131300 Sobic008G088872 Sobic008G088872 Sobic005G162500--Sobic008G088872 Sobic005G162500--Sobic003G186000 Sobic008G098900 Sobic008G098900 Sobic005G162500--Sobic008G098900 Sobic005G162500--Sobic004G276400 Sobic002G335600 Sobic002G335600 Sobic005G162500--Sobic002G335600 Sobic010G105200--Sobic004G276400 Sobic009G109200 Sobic009G109200 Sobic010G105200--Sobic009G109200 Sobic010G105200--Sobic003G186000 Sobic007G098500 Sobic007G098500 Sobic010G105200--Sobic007G098500 Sobic010G105200--Sobic004G242400 Sobic010G105200--Sobic004G034900 Sobic010G105200--Sobic007G062800 Sobic005G008800 Sobic005G008800 Sobic010G105200--Sobic005G008800 Sobic010G105200--Sobic010G010700 Sobic004G334300--Sobic003G186000 Sobic004G334300--Sobic008G001200 Sobic004G334300--Sobic001G457800 Sobic006G040500 Sobic006G040500 Sobic004G334300--Sobic006G040500 Sobic010G123600 Sobic010G123600 Sobic004G334300--Sobic010G123600 Sobic004G334300--Sobic002G308700 Sobic004G334300--Sobic005G162500 Sobic004G244900 Sobic004G244900 Sobic004G334300--Sobic004G244900 Sobic004G334300--Sobic004G276400 Sobic002G133300--Sobic004G276400 Sobic001G433800 Sobic001G433800 Sobic002G133300--Sobic001G433800 Sobic001G004400 Sobic001G004400 Sobic002G133300--Sobic001G004400 Sobic001G289800 Sobic001G289800 Sobic002G133300--Sobic001G289800 Sobic003G072200 Sobic003G072200 Sobic002G133300--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic002G133300--Sobic002G397500 Sobic004G131300 Sobic004G131300 Sobic002G133300--Sobic004G131300 Sobic002G133300--Sobic001G194200 Sobic002G133300--Sobic001G493700 Sobic009G256400 Sobic009G256400 Sobic001G457800--Sobic009G256400 Sobic001G457800--Sobic008G001200 Sobic001G457800--Sobic001G370900 Sobic003G166750 Sobic003G166750 Sobic001G457800--Sobic003G166750 Sobic003G155100 Sobic003G155100 Sobic001G457800--Sobic003G155100 Sobic004G001500 Sobic004G001500 Sobic001G457800--Sobic004G001500 Sobic001G230000 Sobic001G230000 Sobic001G457800--Sobic001G230000 Sobic003G043200 Sobic003G043200 Sobic001G457800--Sobic003G043200 Sobic001G457800--Sobic004G334300 Sobic001G058200 Sobic001G058200 Sobic001G151100--Sobic001G058200 Sobic001G151100--Sobic001G433800 Sobic005G167700 Sobic005G167700 Sobic001G151100--Sobic005G167700 Sobic001G087600 Sobic001G087600 Sobic001G151100--Sobic001G087600 Sobic001G151100--Sobic002G308700 Sobic001G151100--Sobic005G162500 Sobic001G151100--Sobic002G133300 Sobic001G542400 Sobic001G542400 Sobic001G151100--Sobic001G542400 Sobic004G248600 Sobic004G248600 Sobic001G151100--Sobic004G248600 Sobic002G316600--Sobic007G103100 Sobic001G527800 Sobic001G527800 Sobic002G316600--Sobic001G527800 Sobic002G316600--Sobic003G186000 Sobic002G316600--Sobic004G276400 Sobic001G529600 Sobic001G529600 Sobic002G316600--Sobic001G529600 Sobic002G316600--Sobic003G166750 Sobic002G316600--Sobic001G194200 Sobic002G316600--Sobic001G289800 Sobic010G079500 Sobic010G079500 Sobic002G316600--Sobic010G079500
Octagon: transcription factors


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