Gene annotation
Transcriptome id Sobic.009G255700.1
Synonym
Functional annotation SIT4 phosphatase-associated protein domain containing protein, expressed
UniProt A0A1B6PA78
Pfam PF04499
Panther DB PTHR12634 PTHR12634:SF17
NCBI CDD KOG2073; SAP family cell cycle dependent phosphatase-associated protein
KEGG Orthology K15501; PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G30470 : SIT4 phosphatase-associated family protein
RAP-DB (Rice) LOC_Os05g51490.1 : SIT4 phosphatase-associated protein domain containing protein, expressed
MaizeGDB (Corn) Zm00025a044748 , Zm00025a038412 , Zm00025a028519
Brachypodium KQK08471
Barley HORVU3Hr1G050920.14 , HORVU3Hr1G050920.13 , HORVU3Hr1G050920.12 , HORVU3Hr1G050920.11 , HORVU3Hr1G050920.10 , HORVU3Hr1G050920.9 , HORVU3Hr1G050920.8 , HORVU3Hr1G050920.7 , HORVU3Hr1G050920.6 , HORVU3Hr1G050920.5 , HORVU3Hr1G050920.4 , HORVU3Hr1G050920.3 , HORVU3Hr1G050920.2 , HORVU3Hr1G050920.1
Wheat TraesCS3A02G210300 , TraesCS3A02G210300 , TraesCS3B02G240900 , TraesCS3D02G213100 , TraesCS3D02G213100 , TraesCS3B02G240900
Populus PNT42417 , PNT42419 , PNT42418 , PNT42420


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cDNA sequences
Sobic.009G255700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G192000 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
2 Sobic.008G088872 - -
3 Sobic.002G275700 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
4 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
5 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
6 Sobic.006G184900 tetratricopeptide repeat domain containing protein, expressed K15176: RNA polymerase-associated protein CTR9
7 Sobic.002G308700 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
8 Sobic.002G335600 eukaryotic translation initiation factor 4G, putative, expressed K03260: translation initiation factor 4G
9 Sobic.004G244900 expressed protein -
10 Sobic.004G334300 ATMAK10, putative, expressed -
11 Sobic.010G123600 WW domain containing protein, expressed -
12 Sobic.002G429300 importin subunit beta, putative, expressed -
13 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
14 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
15 Sobic.003G166750 - K15188: cyclin T
16 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
17 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
18 Sobic.001G527800 DCL2, putative, expressed K11592: DICER1, endoribonuclease Dicer
19 Sobic.001G263600 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
20 Sobic.006G041600 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1


Gene co-expression network
sample Sobic009G255700 Sobic009G255700 Sobic001G192000 Sobic001G192000 Sobic009G255700--Sobic001G192000 Sobic008G088872 Sobic008G088872 Sobic009G255700--Sobic008G088872 Sobic002G275700 Sobic002G275700 Sobic009G255700--Sobic002G275700 Sobic001G370900 Sobic001G370900 Sobic009G255700--Sobic001G370900 Sobic005G162500 Sobic005G162500 Sobic009G255700--Sobic005G162500 Sobic006G184900 Sobic006G184900 Sobic009G255700--Sobic006G184900 Sobic002G308700 Sobic002G308700 Sobic009G255700--Sobic002G308700 Sobic002G335600 Sobic002G335600 Sobic009G255700--Sobic002G335600 Sobic004G244900 Sobic004G244900 Sobic009G255700--Sobic004G244900 Sobic001G192000--Sobic002G275700 Sobic001G192000--Sobic009G255700 Sobic001G192000--Sobic005G162500 Sobic001G192000--Sobic008G088872 Sobic001G333100 Sobic001G333100 Sobic001G192000--Sobic001G333100 Sobic003G195000 Sobic003G195000 Sobic001G192000--Sobic003G195000 Sobic002G146300 Sobic002G146300 Sobic001G192000--Sobic002G146300 Sobic001G192000--Sobic001G370900 Sobic003G221400 Sobic003G221400 Sobic001G192000--Sobic003G221400 Sobic008G088872--Sobic005G162500 Sobic008G088872--Sobic001G370900 Sobic009G131300 Sobic009G131300 Sobic008G088872--Sobic009G131300 Sobic008G088872--Sobic006G184900 Sobic005G062200 Sobic005G062200 Sobic008G088872--Sobic005G062200 Sobic001G263600 Sobic001G263600 Sobic008G088872--Sobic001G263600 Sobic002G042600 Sobic002G042600 Sobic008G088872--Sobic002G042600 Sobic002G429300 Sobic002G429300 Sobic008G088872--Sobic002G429300 Sobic008G088872--Sobic002G335600 Sobic002G275700--Sobic001G192000 Sobic001G194200 Sobic001G194200 Sobic002G275700--Sobic001G194200 Sobic007G103100 Sobic007G103100 Sobic002G275700--Sobic007G103100 Sobic006G041600 Sobic006G041600 Sobic002G275700--Sobic006G041600 Sobic002G275700--Sobic009G255700 Sobic002G275700--Sobic003G195000 Sobic001G289800 Sobic001G289800 Sobic002G275700--Sobic001G289800 Sobic001G527800 Sobic001G527800 Sobic002G275700--Sobic001G527800 Sobic003G196300 Sobic003G196300 Sobic002G275700--Sobic003G196300 Sobic008G098900 Sobic008G098900 Sobic001G370900--Sobic008G098900 Sobic005G001000 Sobic005G001000 Sobic001G370900--Sobic005G001000 Sobic009G256400 Sobic009G256400 Sobic001G370900--Sobic009G256400 Sobic001G370900--Sobic002G146300 Sobic003G205200 Sobic003G205200 Sobic001G370900--Sobic003G205200 Sobic001G370900--Sobic001G194200 Sobic004G276400 Sobic004G276400 Sobic001G370900--Sobic004G276400 Sobic008G001200 Sobic008G001200 Sobic001G370900--Sobic008G001200 Sobic001G457800 Sobic001G457800 Sobic001G370900--Sobic001G457800 Sobic001G493700 Sobic001G493700 Sobic005G162500--Sobic001G493700 Sobic005G162500--Sobic002G429300 Sobic005G162500--Sobic001G370900 Sobic005G162500--Sobic009G131300 Sobic005G162500--Sobic008G088872 Sobic003G186000 Sobic003G186000 Sobic005G162500--Sobic003G186000 Sobic005G162500--Sobic008G098900 Sobic005G162500--Sobic004G276400 Sobic005G162500--Sobic002G335600 Sobic006G184900--Sobic002G335600 Sobic006G184900--Sobic002G429300 Sobic006G184900--Sobic008G088872 Sobic006G184900--Sobic002G042600 Sobic006G184900--Sobic001G370900 Sobic006G184900--Sobic009G131300 Sobic006G184900--Sobic001G493700 Sobic002G179400 Sobic002G179400 Sobic006G184900--Sobic002G179400 Sobic006G184900--Sobic005G062200 Sobic002G308700--Sobic003G186000 Sobic002G308700--Sobic004G276400 Sobic002G308700--Sobic005G162500 Sobic010G105200 Sobic010G105200 Sobic002G308700--Sobic010G105200 Sobic004G334300 Sobic004G334300 Sobic002G308700--Sobic004G334300 Sobic002G133300 Sobic002G133300 Sobic002G308700--Sobic002G133300 Sobic002G308700--Sobic001G457800 Sobic001G151100 Sobic001G151100 Sobic002G308700--Sobic001G151100 Sobic002G316600 Sobic002G316600 Sobic002G308700--Sobic002G316600 Sobic002G335600--Sobic006G184900 Sobic002G335600--Sobic005G162500 Sobic006G032300 Sobic006G032300 Sobic002G335600--Sobic006G032300 Sobic002G335600--Sobic009G131300 Sobic002G335600--Sobic002G429300 Sobic002G335600--Sobic001G493700 Sobic002G335600--Sobic008G088872 Sobic004G040500 Sobic004G040500 Sobic002G335600--Sobic004G040500 Sobic004G053500 Sobic004G053500 Sobic002G335600--Sobic004G053500 Sobic004G244900--Sobic001G457800 Sobic004G244900--Sobic004G334300 Sobic003G119600 Sobic003G119600 Sobic004G244900--Sobic003G119600 Sobic003G155100 Sobic003G155100 Sobic004G244900--Sobic003G155100 Sobic004G244900--Sobic008G001200 Sobic004G356700 Sobic004G356700 Sobic004G244900--Sobic004G356700 Sobic009G201300 Sobic009G201300 Sobic004G244900--Sobic009G201300 Sobic004G244900--Sobic002G275700 Sobic003G168100 Sobic003G168100 Sobic004G244900--Sobic003G168100
Octagon: transcription factors


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