Gene annotation
Transcriptome id Sobic.005G162500.1
Synonym UBP12, Sb05g022390
Functional annotation ubiquitin carboxyl-terminal hydrolase, putative, expressed
UniProt C5Y4X8
Pfam PF00917 PF13423 PF14533 PF12436
Panther DB PTHR24006 PTHR24006:SF445
NCBI CDD -
KEGG Orthology K11838; USP7, ubiquitin carboxyl-terminal hydrolase 7
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G06600 : ubiquitin-specific protease 12
RAP-DB (Rice) LOC_Os12g30540.1 : ubiquitin carboxyl-terminal hydrolase, putative, expressed
MaizeGDB (Corn) Zm00025a024859 , Zm00025a054108 , Zm00025a028438 , Zm00025a033863
Brachypodium KQJ88127 , KQJ88126 , KQJ86691 , KQJ86690 , KQJ86693 , KQJ86692
Barley HORVU4Hr1G034950.79 , HORVU4Hr1G034950.78 , HORVU4Hr1G034950.75 , HORVU4Hr1G034950.74 , HORVU4Hr1G034950.77 , HORVU4Hr1G034950.76 , HORVU4Hr1G034950.71 , HORVU4Hr1G034950.70 , HORVU4Hr1G034950.73 , HORVU4Hr1G034950.72 , HORVU4Hr1G034950.100 , HORVU5Hr1G031980.15 , HORVU4Hr1G034950.102 , HORVU4Hr1G034950.103 , HORVU2Hr1G058700.32 , HORVU2Hr1G058700.30 , HORVU2Hr1G058700.31 , HORVU2Hr1G058700.34 , HORVU5Hr1G031980.12 , HORVU4Hr1G034950.104 , HORVU4Hr1G034950.118 , HORVU4Hr1G034950.111 , HORVU4Hr1G034950.110 , HORVU4Hr1G034950.117 , HORVU4Hr1G034950.116 , HORVU5Hr1G031980.21 , HORVU5Hr1G031980.20 , HORVU5Hr1G031980.23 , HORVU5Hr1G031980.22 , HORVU5Hr1G031980.25 , HORVU5Hr1G031980.24 , HORVU5Hr1G031980.27 , HORVU5Hr1G031980.26 , HORVU5Hr1G031980.29 , HORVU5Hr1G031980.28 , HORVU4Hr1G034950.39 , HORVU4Hr1G034950.38 , HORVU4Hr1G034950.30 , HORVU4Hr1G034950.33 , HORVU4Hr1G034950.35 , HORVU4Hr1G034950.34 , HORVU4Hr1G034950.37 , HORVU4Hr1G034950.36 , HORVU5Hr1G031980.19 , HORVU4Hr1G034950.9 , HORVU4Hr1G034950.8 , HORVU4Hr1G034950.7 , HORVU4Hr1G034950.6 , HORVU4Hr1G034950.5 , HORVU4Hr1G034950.4 , HORVU4Hr1G034950.3 , HORVU4Hr1G034950.2 , HORVU4Hr1G034950.1 , HORVU5Hr1G031980.14 , HORVU4Hr1G034950.99 , HORVU4Hr1G034950.98 , HORVU4Hr1G034950.97 , HORVU4Hr1G034950.96 , HORVU4Hr1G034950.95 , HORVU4Hr1G034950.94 , HORVU4Hr1G034950.93 , HORVU4Hr1G034950.92 , HORVU4Hr1G034950.91 , HORVU4Hr1G034950.90 , HORVU5Hr1G031980.10 , HORVU4Hr1G034950.62 , HORVU4Hr1G034950.63 , HORVU4Hr1G034950.60 , HORVU4Hr1G034950.61 , HORVU4Hr1G034950.64 , HORVU4Hr1G034950.68 , HORVU4Hr1G034950.69 , HORVU5Hr1G031980.11 , HORVU5Hr1G031980.36 , HORVU5Hr1G031980.37 , HORVU5Hr1G031980.34 , HORVU5Hr1G031980.35 , HORVU5Hr1G031980.32 , HORVU5Hr1G031980.33 , HORVU5Hr1G031980.30 , HORVU5Hr1G031980.31 , HORVU5Hr1G031980.38 , HORVU5Hr1G031980.39 , HORVU2Hr1G058700.2 , HORVU2Hr1G058700.3 , HORVU2Hr1G058700.1 , HORVU2Hr1G058700.6 , HORVU2Hr1G058700.7 , HORVU4Hr1G034950.28 , HORVU4Hr1G034950.29 , HORVU4Hr1G034950.27 , HORVU4Hr1G034950.24 , HORVU2Hr1G058700.9 , HORVU4Hr1G034950.22 , HORVU4Hr1G034950.23 , HORVU4Hr1G034950.20 , HORVU5Hr1G031980.40 , HORVU4Hr1G034950.47 , HORVU4Hr1G034950.52 , HORVU4Hr1G034950.51 , HORVU4Hr1G034950.50 , HORVU4Hr1G034950.57 , HORVU4Hr1G034950.56 , HORVU4Hr1G034950.55 , HORVU4Hr1G034950.54 , HORVU5Hr1G031980.7 , HORVU5Hr1G031980.4 , HORVU5Hr1G031980.5 , HORVU5Hr1G031980.2 , HORVU5Hr1G031980.3 , HORVU5Hr1G031980.1 , HORVU5Hr1G031980.8 , HORVU5Hr1G031980.9 , HORVU2Hr1G058700.10 , HORVU2Hr1G058700.11 , HORVU2Hr1G058700.12 , HORVU2Hr1G058700.13 , HORVU2Hr1G058700.14 , HORVU2Hr1G058700.15 , HORVU2Hr1G058700.16 , HORVU2Hr1G058700.17 , HORVU2Hr1G058700.18 , HORVU2Hr1G058700.19 , HORVU4Hr1G034950.88 , HORVU4Hr1G034950.89 , HORVU4Hr1G034950.84 , HORVU4Hr1G034950.85 , HORVU4Hr1G034950.86 , HORVU4Hr1G034950.80 , HORVU4Hr1G034950.81 , HORVU4Hr1G034950.82 , HORVU4Hr1G034950.17 , HORVU4Hr1G034950.16 , HORVU4Hr1G034950.15 , HORVU4Hr1G034950.14 , HORVU4Hr1G034950.13 , HORVU4Hr1G034950.12 , HORVU4Hr1G034950.11 , HORVU4Hr1G034950.10 , HORVU4Hr1G034950.19 , HORVU4Hr1G034950.18 , HORVU2Hr1G058700.4 , HORVU2Hr1G058700.5 , HORVU2Hr1G058700.8 , HORVU4Hr1G034950.21 , HORVU4Hr1G034950.49 , HORVU4Hr1G034950.40 , HORVU4Hr1G034950.43 , HORVU4Hr1G034950.44 , HORVU4Hr1G034950.45 , HORVU4Hr1G034950.46 , HORVU4Hr1G034950.53 , HORVU4Hr1G034950.119 , HORVU4Hr1G034950.113 , HORVU4Hr1G034950.112 , HORVU4Hr1G034950.41 , HORVU2Hr1G058700.33 , HORVU4Hr1G034950.114 , HORVU4Hr1G034950.42 , HORVU2Hr1G058700.25 , HORVU2Hr1G058700.24 , HORVU2Hr1G058700.27 , HORVU2Hr1G058700.26 , HORVU2Hr1G058700.21 , HORVU2Hr1G058700.23 , HORVU2Hr1G058700.22 , HORVU2Hr1G058700.29 , HORVU2Hr1G058700.28 , HORVU5Hr1G031980.18 , HORVU4Hr1G034950.101 , HORVU5Hr1G031980.16 , HORVU5Hr1G031980.17 , HORVU5Hr1G031980.13 , HORVU5Hr1G031980.6
Wheat TraesCS5D02G123300 , TraesCS4D02G165800 , TraesCS2B02G263500 , TraesCS2B02G263500 , TraesCS2B02G263500 , TraesCS2B02G263500 , TraesCS5D02G123300 , TraesCS5D02G123300 , TraesCS5D02G123300 , TraesCS2A02G246800 , TraesCS2A02G246800 , TraesCS2A02G246800 , TraesCS2A02G246800 , TraesCS2A02G246800 , TraesCS4A02G163000 , TraesCS4A02G163000 , TraesCS5B02G111000 , TraesCS5B02G111000 , TraesCS5B02G111000 , TraesCS5B02G111000 , TraesCS5B02G111000 , TraesCS5B02G111000 , TraesCS5B02G111000 , TraesCS5B02G111000 , TraesCS5B02G111000 , TraesCS2D02G249100 , TraesCS2D02G249100 , TraesCS2D02G249100 , TraesCS2D02G249100 , TraesCS5A02G105900 , TraesCS5A02G105900 , TraesCS5B02G111000 , TraesCS5B02G111000 , TraesCS5B02G111000 , TraesCS5D02G123300 , TraesCS5D02G123300 , TraesCS5D02G123300 , TraesCS5D02G123300 , TraesCS5D02G123300 , TraesCS5D02G123300 , TraesCS5D02G123300 , TraesCS5D02G123300 , TraesCS5D02G123300 , TraesCS5A02G105900 , TraesCS5A02G105900 , TraesCS5A02G105900 , TraesCS5A02G105900 , TraesCS5A02G105900 , TraesCS5A02G105900 , TraesCS5A02G105900 , TraesCS5A02G105900 , TraesCS5A02G105900
Populus PNT22088 , PNT22089 , PNT22086 , PNT22087 , PNT22090


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
2 Sobic.002G429300 importin subunit beta, putative, expressed -
3 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
4 Sobic.009G131300 cation-transporting ATPase, putative, expressed K14950: ATP13A1, manganese-transporting P-type ATPase
5 Sobic.008G088872 - -
6 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
7 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
8 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
9 Sobic.002G335600 eukaryotic translation initiation factor 4G, putative, expressed K03260: translation initiation factor 4G
10 Sobic.002G308700 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
11 Sobic.003G221400 tetratricopeptide repeat domain containing protein, expressed K00670: NAA30, N-alpha-acetyltransferase 30
12 Sobic.008G085300 hhH-GPD superfamily base excision DNA repair protein, expressed -
13 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
14 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
15 Sobic.001G192000 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
16 Sobic.003G072200 zinc finger protein, putative, expressed K11978: E3 ubiquitin-protein ligase UBR3
17 Sobic.001G457800 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K18663: activating signal cointegrator complex subunit 3
18 Sobic.009G256400 ATP binding protein, putative, expressed K15192: BTAF1, TATA-binding protein-associated factor
19 Sobic.004G334300 ATMAK10, putative, expressed -
20 Sobic.006G184900 tetratricopeptide repeat domain containing protein, expressed K15176: RNA polymerase-associated protein CTR9


Gene co-expression network
sample Sobic005G162500 Sobic005G162500 Sobic001G493700 Sobic001G493700 Sobic005G162500--Sobic001G493700 Sobic002G429300 Sobic002G429300 Sobic005G162500--Sobic002G429300 Sobic001G370900 Sobic001G370900 Sobic005G162500--Sobic001G370900 Sobic009G131300 Sobic009G131300 Sobic005G162500--Sobic009G131300 Sobic008G088872 Sobic008G088872 Sobic005G162500--Sobic008G088872 Sobic003G186000 Sobic003G186000 Sobic005G162500--Sobic003G186000 Sobic008G098900 Sobic008G098900 Sobic005G162500--Sobic008G098900 Sobic004G276400 Sobic004G276400 Sobic005G162500--Sobic004G276400 Sobic002G335600 Sobic002G335600 Sobic005G162500--Sobic002G335600 Sobic002G179400 Sobic002G179400 Sobic001G493700--Sobic002G179400 Sobic001G493700--Sobic005G162500 Sobic006G184900 Sobic006G184900 Sobic001G493700--Sobic006G184900 Sobic002G133300 Sobic002G133300 Sobic001G493700--Sobic002G133300 Sobic001G493700--Sobic009G131300 Sobic001G493700--Sobic002G429300 Sobic002G042600 Sobic002G042600 Sobic001G493700--Sobic002G042600 Sobic001G493700--Sobic002G335600 Sobic006G088200 Sobic006G088200 Sobic001G493700--Sobic006G088200 Sobic002G429300--Sobic009G131300 Sobic002G429300--Sobic005G162500 Sobic002G429300--Sobic006G184900 Sobic001G263600 Sobic001G263600 Sobic002G429300--Sobic001G263600 Sobic002G429300--Sobic002G042600 Sobic002G429300--Sobic008G098900 Sobic002G429300--Sobic001G493700 Sobic002G429300--Sobic002G335600 Sobic002G429300--Sobic008G088872 Sobic001G370900--Sobic008G098900 Sobic005G001000 Sobic005G001000 Sobic001G370900--Sobic005G001000 Sobic009G256400 Sobic009G256400 Sobic001G370900--Sobic009G256400 Sobic002G146300 Sobic002G146300 Sobic001G370900--Sobic002G146300 Sobic003G205200 Sobic003G205200 Sobic001G370900--Sobic003G205200 Sobic001G194200 Sobic001G194200 Sobic001G370900--Sobic001G194200 Sobic001G370900--Sobic004G276400 Sobic008G001200 Sobic008G001200 Sobic001G370900--Sobic008G001200 Sobic001G457800 Sobic001G457800 Sobic001G370900--Sobic001G457800 Sobic009G131300--Sobic002G429300 Sobic002G401500 Sobic002G401500 Sobic009G131300--Sobic002G401500 Sobic009G131300--Sobic005G162500 Sobic009G131300--Sobic008G088872 Sobic010G059500 Sobic010G059500 Sobic009G131300--Sobic010G059500 Sobic009G131300--Sobic008G098900 Sobic009G131300--Sobic006G184900 Sobic009G131300--Sobic001G493700 Sobic009G084900 Sobic009G084900 Sobic009G131300--Sobic009G084900 Sobic008G088872--Sobic005G162500 Sobic008G088872--Sobic001G370900 Sobic008G088872--Sobic009G131300 Sobic008G088872--Sobic006G184900 Sobic005G062200 Sobic005G062200 Sobic008G088872--Sobic005G062200 Sobic008G088872--Sobic001G263600 Sobic008G088872--Sobic002G042600 Sobic008G088872--Sobic002G429300 Sobic008G088872--Sobic002G335600 Sobic003G186000--Sobic004G276400 Sobic010G105200 Sobic010G105200 Sobic003G186000--Sobic010G105200 Sobic010G010700 Sobic010G010700 Sobic003G186000--Sobic010G010700 Sobic003G186000--Sobic005G001000 Sobic003G186000--Sobic003G205200 Sobic003G186000--Sobic001G194200 Sobic007G062800 Sobic007G062800 Sobic003G186000--Sobic007G062800 Sobic003G186000--Sobic008G001200 Sobic007G103100 Sobic007G103100 Sobic003G186000--Sobic007G103100 Sobic008G098900--Sobic001G370900 Sobic008G085300 Sobic008G085300 Sobic008G098900--Sobic008G085300 Sobic001G117200 Sobic001G117200 Sobic008G098900--Sobic001G117200 Sobic008G098900--Sobic003G205200 Sobic008G098900--Sobic005G001000 Sobic003G072200 Sobic003G072200 Sobic008G098900--Sobic003G072200 Sobic008G098900--Sobic005G162500 Sobic008G098900--Sobic002G042600 Sobic008G098900--Sobic004G276400 Sobic004G276400--Sobic003G186000 Sobic004G276400--Sobic010G010700 Sobic004G276400--Sobic010G105200 Sobic004G276400--Sobic001G194200 Sobic004G034900 Sobic004G034900 Sobic004G276400--Sobic004G034900 Sobic004G276400--Sobic007G062800 Sobic004G291900 Sobic004G291900 Sobic004G276400--Sobic004G291900 Sobic004G242400 Sobic004G242400 Sobic004G276400--Sobic004G242400 Sobic004G276400--Sobic008G001200 Sobic002G335600--Sobic006G184900 Sobic002G335600--Sobic005G162500 Sobic006G032300 Sobic006G032300 Sobic002G335600--Sobic006G032300 Sobic002G335600--Sobic009G131300 Sobic002G335600--Sobic002G429300 Sobic002G335600--Sobic001G493700 Sobic002G335600--Sobic008G088872 Sobic004G040500 Sobic004G040500 Sobic002G335600--Sobic004G040500 Sobic004G053500 Sobic004G053500 Sobic002G335600--Sobic004G053500
Octagon: transcription factors


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