Gene annotation
Transcriptome id Sobic.007G054800.1
Synonym TWN2, Sb07g004420, VALRS
Functional annotation valyl-tRNA synthetase, putative, expressed
UniProt C5YHH1
Pfam PF00133 PF08264 PF10458
Panther DB PTHR11946:SF5 PTHR11946
NCBI CDD -
KEGG Orthology K01873; VARS, valyl-tRNA synthetase
Gene Ontology GO:0004812; aminoacyl-tRNA ligase activity GO:0006418tRNA aminoacylation for protein translation GO:0000166nucleotide binding GO:0004832valine-tRNA ligase activity GO:0005524ATP binding GO:0005737cytoplasm GO:0006438valyl-tRNA aminoacylation


Orthologs (automatic annotation)
TAIR AT1G14610 : valyl-tRNA synthetase / valine--tRNA ligase (VALRS)
RAP-DB (Rice) LOC_Os03g48850.1 : valyl-tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a055058 , Zm00025a014510
Brachypodium KQK03005
Barley HORVU3Hr1G022350.1 , HORVU3Hr1G022350.3 , HORVU3Hr1G022350.2 , HORVU3Hr1G022350.5 , HORVU3Hr1G022350.4 , HORVU3Hr1G022350.7 , HORVU3Hr1G022350.6 , HORVU3Hr1G022350.9 , HORVU3Hr1G022350.8 , HORVU3Hr1G022350.15 , HORVU3Hr1G022350.14 , HORVU3Hr1G022350.16 , HORVU3Hr1G022350.11 , HORVU3Hr1G022350.10 , HORVU3Hr1G022350.13 , HORVU3Hr1G022350.12
Wheat TraesCS1D02G163400 , TraesCS5B02G053100 , TraesCS3D02G122300 , TraesCS3D02G122300 , TraesCS1B02G204700 , TraesCS3A02G120200 , TraesCS3A02G120200 , TraesCS5A02G048100 , TraesCS3B02G139700 , TraesCS3B02G139700
Populus PNT26259 , PNT26260 , PNT26261


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cDNA sequences
Sobic.007G054800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G221400 tetratricopeptide repeat domain containing protein, expressed K00670: NAA30, N-alpha-acetyltransferase 30
2 Sobic.001G110600 HEAT repeat family protein, putative, expressed -
3 Sobic.001G004400 - K14290: XPO1, exportin-1
4 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
5 Sobic.006G280000 transportin-2, putative, expressed K18752: TNPO1, IPO2, transportin-1
6 Sobic.002G256700 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11844: ubiquitin carboxyl-terminal hydrolase 16/45
7 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
8 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
9 Sobic.004G131300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
10 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
11 Sobic.008G085300 hhH-GPD superfamily base excision DNA repair protein, expressed -
12 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
13 Sobic.002G179400 DNA binding protein, putative, expressed -
14 Sobic.002G429300 importin subunit beta, putative, expressed -
15 Sobic.002G335600 eukaryotic translation initiation factor 4G, putative, expressed K03260: translation initiation factor 4G
16 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
17 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
18 Sobic.009G131300 cation-transporting ATPase, putative, expressed K14950: ATP13A1, manganese-transporting P-type ATPase
19 Sobic.009G201700 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
20 Sobic.008G082500 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase


Gene co-expression network
sample Sobic007G054800 Sobic007G054800 Sobic003G221400 Sobic003G221400 Sobic007G054800--Sobic003G221400 Sobic001G110600 Sobic001G110600 Sobic007G054800--Sobic001G110600 Sobic001G004400 Sobic001G004400 Sobic007G054800--Sobic001G004400 Sobic005G162500 Sobic005G162500 Sobic007G054800--Sobic005G162500 Sobic006G280000 Sobic006G280000 Sobic007G054800--Sobic006G280000 Sobic002G256700 Sobic002G256700 Sobic007G054800--Sobic002G256700 Sobic002G133300 Sobic002G133300 Sobic007G054800--Sobic002G133300 Sobic002G142900 Sobic002G142900 Sobic007G054800--Sobic002G142900 Sobic004G131300 Sobic004G131300 Sobic007G054800--Sobic004G131300 Sobic003G221400--Sobic007G054800 Sobic003G221400--Sobic005G162500 Sobic001G493700 Sobic001G493700 Sobic003G221400--Sobic001G493700 Sobic003G221400--Sobic001G110600 Sobic003G221400--Sobic001G004400 Sobic001G333100 Sobic001G333100 Sobic003G221400--Sobic001G333100 Sobic002G179400 Sobic002G179400 Sobic003G221400--Sobic002G179400 Sobic001G192000 Sobic001G192000 Sobic003G221400--Sobic001G192000 Sobic008G085300 Sobic008G085300 Sobic003G221400--Sobic008G085300 Sobic001G110600--Sobic007G054800 Sobic001G110600--Sobic001G004400 Sobic001G110600--Sobic003G221400 Sobic001G110600--Sobic001G493700 Sobic001G191700 Sobic001G191700 Sobic001G110600--Sobic001G191700 Sobic001G110600--Sobic005G162500 Sobic003G233400 Sobic003G233400 Sobic001G110600--Sobic003G233400 Sobic001G110600--Sobic008G085300 Sobic001G287500 Sobic001G287500 Sobic001G110600--Sobic001G287500 Sobic001G004400--Sobic002G133300 Sobic001G004400--Sobic001G110600 Sobic001G004400--Sobic007G054800 Sobic004G248600 Sobic004G248600 Sobic001G004400--Sobic004G248600 Sobic003G312100 Sobic003G312100 Sobic001G004400--Sobic003G312100 Sobic001G004400--Sobic001G493700 Sobic001G004400--Sobic003G221400 Sobic004G276400 Sobic004G276400 Sobic001G004400--Sobic004G276400 Sobic001G004400--Sobic002G179400 Sobic005G162500--Sobic001G493700 Sobic002G429300 Sobic002G429300 Sobic005G162500--Sobic002G429300 Sobic001G370900 Sobic001G370900 Sobic005G162500--Sobic001G370900 Sobic009G131300 Sobic009G131300 Sobic005G162500--Sobic009G131300 Sobic008G088872 Sobic008G088872 Sobic005G162500--Sobic008G088872 Sobic003G186000 Sobic003G186000 Sobic005G162500--Sobic003G186000 Sobic008G098900 Sobic008G098900 Sobic005G162500--Sobic008G098900 Sobic005G162500--Sobic004G276400 Sobic002G335600 Sobic002G335600 Sobic005G162500--Sobic002G335600 Sobic006G280000--Sobic007G054800 Sobic001G542500 Sobic001G542500 Sobic006G280000--Sobic001G542500 Sobic004G004300 Sobic004G004300 Sobic006G280000--Sobic004G004300 Sobic006G280000--Sobic002G256700 Sobic003G337300 Sobic003G337300 Sobic006G280000--Sobic003G337300 Sobic001G089600 Sobic001G089600 Sobic006G280000--Sobic001G089600 Sobic003G104000 Sobic003G104000 Sobic006G280000--Sobic003G104000 Sobic006G280000--Sobic001G287500 Sobic001G117200 Sobic001G117200 Sobic006G280000--Sobic001G117200 Sobic002G256700--Sobic003G104000 Sobic002G256700--Sobic001G493700 Sobic002G256700--Sobic007G054800 Sobic001G251100 Sobic001G251100 Sobic002G256700--Sobic001G251100 Sobic002G256700--Sobic002G142900 Sobic002G256700--Sobic004G131300 Sobic002G256700--Sobic006G280000 Sobic002G256700--Sobic002G133300 Sobic002G256700--Sobic001G117200 Sobic002G133300--Sobic004G276400 Sobic001G433800 Sobic001G433800 Sobic002G133300--Sobic001G433800 Sobic002G133300--Sobic001G004400 Sobic001G289800 Sobic001G289800 Sobic002G133300--Sobic001G289800 Sobic003G072200 Sobic003G072200 Sobic002G133300--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic002G133300--Sobic002G397500 Sobic002G133300--Sobic004G131300 Sobic001G194200 Sobic001G194200 Sobic002G133300--Sobic001G194200 Sobic002G133300--Sobic001G493700 Sobic002G142900--Sobic004G131300 Sobic001G263600 Sobic001G263600 Sobic002G142900--Sobic001G263600 Sobic002G142900--Sobic002G133300 Sobic003G195000 Sobic003G195000 Sobic002G142900--Sobic003G195000 Sobic002G142900--Sobic007G054800 Sobic002G142900--Sobic005G162500 Sobic002G142900--Sobic003G104000 Sobic002G142900--Sobic002G256700 Sobic002G142900--Sobic002G335600 Sobic004G131300--Sobic002G133300 Sobic004G131300--Sobic002G142900 Sobic005G172500 Sobic005G172500 Sobic004G131300--Sobic005G172500 Sobic009G084900 Sobic009G084900 Sobic004G131300--Sobic009G084900 Sobic004G256500 Sobic004G256500 Sobic004G131300--Sobic004G256500 Sobic010G059500 Sobic010G059500 Sobic004G131300--Sobic010G059500 Sobic004G131300--Sobic007G054800 Sobic006G136400 Sobic006G136400 Sobic004G131300--Sobic006G136400 Sobic004G131300--Sobic002G256700
Octagon: transcription factors


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