Gene annotation
Transcriptome id Sobic.006G280000.1
Synonym Sb06g034050, ATTRN1, TRN1
Functional annotation transportin-2, putative, expressed
UniProt C5YB46
Pfam PF03810 PF02985 PF13513
Panther DB PTHR10527 PTHR10527:SF3
NCBI CDD -
KEGG Orthology K18752; TNPO1, IPO2, transportin-1
Gene Ontology GO:0008536; Ran GTPase binding GO:0006886intracellular protein transport GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G16950 : transportin 1
RAP-DB (Rice) LOC_Os04g59494.4 : transportin-2, putative, expressed
MaizeGDB (Corn) Zm00025a057499 , Zm00025a010561
Brachypodium KQJ85503
Barley HORVU2Hr1G126610.6 , HORVU2Hr1G126610.7 , HORVU2Hr1G126610.4 , HORVU2Hr1G126610.5 , HORVU2Hr1G126610.2 , HORVU2Hr1G126610.3 , HORVU2Hr1G126610.1 , HORVU2Hr1G126610.8 , HORVU2Hr1G126610.9 , HORVU2Hr1G126610.14 , HORVU2Hr1G126610.15 , HORVU2Hr1G126610.16 , HORVU2Hr1G126610.10 , HORVU2Hr1G126610.11 , HORVU2Hr1G126610.12 , HORVU2Hr1G126610.13
Wheat TraesCS2A02G562500 , TraesCS2B02G624100 , TraesCS2B02G624100 , TraesCS2D02G572700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G280000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
2 Sobic.001G542500 1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
3 Sobic.004G004300 expressed protein -
4 Sobic.002G256700 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11844: ubiquitin carboxyl-terminal hydrolase 16/45
5 Sobic.003G337300 HEAT repeat family protein, putative, expressed K08876: SCY1-like protein 1
6 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
7 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
8 Sobic.001G287500 heat shock protein DnaJ, putative, expressed K09533: DnaJ homolog subfamily C member 13
9 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
10 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
11 Sobic.001G004400 - K14290: XPO1, exportin-1
12 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
13 Sobic.009G131300 cation-transporting ATPase, putative, expressed K14950: ATP13A1, manganese-transporting P-type ATPase
14 Sobic.004G322400 WD40-like, putative, expressed -
15 Sobic.001G110600 HEAT repeat family protein, putative, expressed -
16 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
17 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
18 Sobic.010G004100 expressed protein -
19 Sobic.004G023100 protein binding protein, putative, expressed -
20 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'


Gene co-expression network
sample Sobic006G280000 Sobic006G280000 Sobic007G054800 Sobic007G054800 Sobic006G280000--Sobic007G054800 Sobic001G542500 Sobic001G542500 Sobic006G280000--Sobic001G542500 Sobic004G004300 Sobic004G004300 Sobic006G280000--Sobic004G004300 Sobic002G256700 Sobic002G256700 Sobic006G280000--Sobic002G256700 Sobic003G337300 Sobic003G337300 Sobic006G280000--Sobic003G337300 Sobic001G089600 Sobic001G089600 Sobic006G280000--Sobic001G089600 Sobic003G104000 Sobic003G104000 Sobic006G280000--Sobic003G104000 Sobic001G287500 Sobic001G287500 Sobic006G280000--Sobic001G287500 Sobic001G117200 Sobic001G117200 Sobic006G280000--Sobic001G117200 Sobic003G221400 Sobic003G221400 Sobic007G054800--Sobic003G221400 Sobic001G110600 Sobic001G110600 Sobic007G054800--Sobic001G110600 Sobic001G004400 Sobic001G004400 Sobic007G054800--Sobic001G004400 Sobic005G162500 Sobic005G162500 Sobic007G054800--Sobic005G162500 Sobic007G054800--Sobic006G280000 Sobic007G054800--Sobic002G256700 Sobic002G133300 Sobic002G133300 Sobic007G054800--Sobic002G133300 Sobic002G142900 Sobic002G142900 Sobic007G054800--Sobic002G142900 Sobic004G131300 Sobic004G131300 Sobic007G054800--Sobic004G131300 Sobic004G291900 Sobic004G291900 Sobic001G542500--Sobic004G291900 Sobic001G289800 Sobic001G289800 Sobic001G542500--Sobic001G289800 Sobic008G085300 Sobic008G085300 Sobic001G542500--Sobic008G085300 Sobic004G276400 Sobic004G276400 Sobic001G542500--Sobic004G276400 Sobic008G098900 Sobic008G098900 Sobic001G542500--Sobic008G098900 Sobic003G196300 Sobic003G196300 Sobic001G542500--Sobic003G196300 Sobic001G542500--Sobic001G117200 Sobic009G109200 Sobic009G109200 Sobic001G542500--Sobic009G109200 Sobic004G174200 Sobic004G174200 Sobic001G542500--Sobic004G174200 Sobic001G281100 Sobic001G281100 Sobic004G004300--Sobic001G281100 Sobic005G026200 Sobic005G026200 Sobic004G004300--Sobic005G026200 Sobic001G534800 Sobic001G534800 Sobic004G004300--Sobic001G534800 Sobic006G126100 Sobic006G126100 Sobic004G004300--Sobic006G126100 Sobic004G004300--Sobic001G117200 Sobic004G004200 Sobic004G004200 Sobic004G004300--Sobic004G004200 Sobic001G415300 Sobic001G415300 Sobic004G004300--Sobic001G415300 Sobic010G275500 Sobic010G275500 Sobic004G004300--Sobic010G275500 Sobic005G003300 Sobic005G003300 Sobic004G004300--Sobic005G003300 Sobic002G256700--Sobic003G104000 Sobic001G493700 Sobic001G493700 Sobic002G256700--Sobic001G493700 Sobic002G256700--Sobic007G054800 Sobic001G251100 Sobic001G251100 Sobic002G256700--Sobic001G251100 Sobic002G256700--Sobic002G142900 Sobic002G256700--Sobic004G131300 Sobic002G256700--Sobic006G280000 Sobic002G256700--Sobic002G133300 Sobic002G256700--Sobic001G117200 Sobic003G337300--Sobic003G104000 Sobic010G004100 Sobic010G004100 Sobic003G337300--Sobic010G004100 Sobic002G137400 Sobic002G137400 Sobic003G337300--Sobic002G137400 Sobic004G039600 Sobic004G039600 Sobic003G337300--Sobic004G039600 Sobic006G131000 Sobic006G131000 Sobic003G337300--Sobic006G131000 Sobic004G344901 Sobic004G344901 Sobic003G337300--Sobic004G344901 Sobic004G322400 Sobic004G322400 Sobic003G337300--Sobic004G322400 Sobic003G332500 Sobic003G332500 Sobic003G337300--Sobic003G332500 Sobic003G337300--Sobic001G415300 Sobic003G095900 Sobic003G095900 Sobic001G089600--Sobic003G095900 Sobic006G086600 Sobic006G086600 Sobic001G089600--Sobic006G086600 Sobic010G115400 Sobic010G115400 Sobic001G089600--Sobic010G115400 Sobic001G089600--Sobic001G493700 Sobic002G397500 Sobic002G397500 Sobic001G089600--Sobic002G397500 Sobic004G260100 Sobic004G260100 Sobic001G089600--Sobic004G260100 Sobic004G248600 Sobic004G248600 Sobic001G089600--Sobic004G248600 Sobic001G089600--Sobic004G322400 Sobic009G084900 Sobic009G084900 Sobic001G089600--Sobic009G084900 Sobic003G104000--Sobic003G337300 Sobic003G104000--Sobic002G256700 Sobic003G104000--Sobic006G126100 Sobic003G104000--Sobic001G251100 Sobic003G104000--Sobic002G142900 Sobic002G295500 Sobic002G295500 Sobic003G104000--Sobic002G295500 Sobic004G277200 Sobic004G277200 Sobic003G104000--Sobic004G277200 Sobic003G104000--Sobic004G131300 Sobic006G261400 Sobic006G261400 Sobic003G104000--Sobic006G261400 Sobic003G233400 Sobic003G233400 Sobic001G287500--Sobic003G233400 Sobic003G072200 Sobic003G072200 Sobic001G287500--Sobic003G072200 Sobic007G098500 Sobic007G098500 Sobic001G287500--Sobic007G098500 Sobic004G051200 Sobic004G051200 Sobic001G287500--Sobic004G051200 Sobic008G092600 Sobic008G092600 Sobic001G287500--Sobic008G092600 Sobic001G347500 Sobic001G347500 Sobic001G287500--Sobic001G347500 Sobic001G426600 Sobic001G426600 Sobic001G287500--Sobic001G426600 Sobic004G040500 Sobic004G040500 Sobic001G287500--Sobic004G040500 Sobic004G204100 Sobic004G204100 Sobic001G287500--Sobic004G204100 Sobic001G117200--Sobic008G098900 Sobic003G408600 Sobic003G408600 Sobic001G117200--Sobic003G408600 Sobic002G430000 Sobic002G430000 Sobic001G117200--Sobic002G430000 Sobic001G540400 Sobic001G540400 Sobic001G117200--Sobic001G540400 Sobic001G137000 Sobic001G137000 Sobic001G117200--Sobic001G137000 Sobic004G113400 Sobic004G113400 Sobic001G117200--Sobic004G113400 Sobic001G117200--Sobic001G542500 Sobic001G058700 Sobic001G058700 Sobic001G117200--Sobic001G058700 Sobic001G117200--Sobic008G092600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.