Gene annotation
Transcriptome id Sobic.001G251100.3,Sobic.001G251100.2
Synonym Sb01g022180
Functional annotation endonuclease/exonuclease/phosphatase family domain containing protein, expressed
UniProt A0A1Z5S782
Pfam PF15801 PF03372
Panther DB PTHR12121 PTHR12121:SF34
NCBI CDD KOG0620; Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins
KEGG Orthology K12603; CNOT6, CCR4-NOT transcription complex subunit 6
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G58580 : DNAse I-like superfamily protein
RAP-DB (Rice) LOC_Os10g27230.1,LOC_Os10g27230.3 : endonuclease/exonuclease/phosphatase family domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQJ96665 , KQJ96666
Barley HORVU1Hr1G035390.3 , HORVU1Hr1G035390.2 , HORVU1Hr1G035390.1 , HORVU1Hr1G035390.6 , HORVU1Hr1G035390.5 , HORVU1Hr1G035390.4
Wheat TraesCS1A02G137900 , TraesCS1A02G137900 , TraesCS1A02G137900 , TraesCS1B02G153300 , TraesCS1B02G153300 , TraesCS1D02G134400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
2 Sobic.002G256700 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11844: ubiquitin carboxyl-terminal hydrolase 16/45
3 Sobic.004G131300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
4 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
5 Sobic.003G293300 nucleoporin, putative, expressed K14304: nuclear pore complex protein Nup85
6 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
7 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
8 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -
9 Sobic.003G379200 wound-responsive family protein, putative, expressed -
10 Sobic.008G088806 - K16280: E3 ubiquitin-protein ligase RGLG
11 Sobic.003G337300 HEAT repeat family protein, putative, expressed K08876: SCY1-like protein 1
12 Sobic.002G052700 cyclophilin, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
13 Sobic.001G333100 U-box domain-containing protein, putative, expressed K10597: UBE4B, ubiquitin conjugation factor E4 B
14 Sobic.006G127600 signal peptide peptidase-like 2B, putative, expressed K09597: signal peptide peptidase-like 2B
15 Sobic.003G221400 tetratricopeptide repeat domain containing protein, expressed K00670: NAA30, N-alpha-acetyltransferase 30
16 Sobic.008G051200 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
17 Sobic.005G116200 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed K10765: alkylated DNA repair protein alkB homolog 1
18 Sobic.006G280000 transportin-2, putative, expressed K18752: TNPO1, IPO2, transportin-1
19 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
20 Sobic.001G227400 WD domain, G-beta repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic001G251100 Sobic001G251100 Sobic003G104000 Sobic003G104000 Sobic001G251100--Sobic003G104000 Sobic002G256700 Sobic002G256700 Sobic001G251100--Sobic002G256700 Sobic004G131300 Sobic004G131300 Sobic001G251100--Sobic004G131300 Sobic002G133300 Sobic002G133300 Sobic001G251100--Sobic002G133300 Sobic003G293300 Sobic003G293300 Sobic001G251100--Sobic003G293300 Sobic007G054800 Sobic007G054800 Sobic001G251100--Sobic007G054800 Sobic001G493700 Sobic001G493700 Sobic001G251100--Sobic001G493700 Sobic004G257100 Sobic004G257100 Sobic001G251100--Sobic004G257100 Sobic003G379200 Sobic003G379200 Sobic001G251100--Sobic003G379200 Sobic003G337300 Sobic003G337300 Sobic003G104000--Sobic003G337300 Sobic003G104000--Sobic002G256700 Sobic006G126100 Sobic006G126100 Sobic003G104000--Sobic006G126100 Sobic003G104000--Sobic001G251100 Sobic002G142900 Sobic002G142900 Sobic003G104000--Sobic002G142900 Sobic002G295500 Sobic002G295500 Sobic003G104000--Sobic002G295500 Sobic004G277200 Sobic004G277200 Sobic003G104000--Sobic004G277200 Sobic003G104000--Sobic004G131300 Sobic006G261400 Sobic006G261400 Sobic003G104000--Sobic006G261400 Sobic002G256700--Sobic003G104000 Sobic002G256700--Sobic001G493700 Sobic002G256700--Sobic007G054800 Sobic002G256700--Sobic001G251100 Sobic002G256700--Sobic002G142900 Sobic002G256700--Sobic004G131300 Sobic006G280000 Sobic006G280000 Sobic002G256700--Sobic006G280000 Sobic002G256700--Sobic002G133300 Sobic001G117200 Sobic001G117200 Sobic002G256700--Sobic001G117200 Sobic004G131300--Sobic002G133300 Sobic004G131300--Sobic002G142900 Sobic005G172500 Sobic005G172500 Sobic004G131300--Sobic005G172500 Sobic009G084900 Sobic009G084900 Sobic004G131300--Sobic009G084900 Sobic004G256500 Sobic004G256500 Sobic004G131300--Sobic004G256500 Sobic010G059500 Sobic010G059500 Sobic004G131300--Sobic010G059500 Sobic004G131300--Sobic007G054800 Sobic006G136400 Sobic006G136400 Sobic004G131300--Sobic006G136400 Sobic004G131300--Sobic002G256700 Sobic004G276400 Sobic004G276400 Sobic002G133300--Sobic004G276400 Sobic001G433800 Sobic001G433800 Sobic002G133300--Sobic001G433800 Sobic001G004400 Sobic001G004400 Sobic002G133300--Sobic001G004400 Sobic001G289800 Sobic001G289800 Sobic002G133300--Sobic001G289800 Sobic003G072200 Sobic003G072200 Sobic002G133300--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic002G133300--Sobic002G397500 Sobic002G133300--Sobic004G131300 Sobic001G194200 Sobic001G194200 Sobic002G133300--Sobic001G194200 Sobic002G133300--Sobic001G493700 Sobic003G293300--Sobic001G251100 Sobic006G010000 Sobic006G010000 Sobic003G293300--Sobic006G010000 Sobic002G020700 Sobic002G020700 Sobic003G293300--Sobic002G020700 Sobic001G333100 Sobic001G333100 Sobic003G293300--Sobic001G333100 Sobic003G218300 Sobic003G218300 Sobic003G293300--Sobic003G218300 Sobic002G071000 Sobic002G071000 Sobic003G293300--Sobic002G071000 Sobic001G234200 Sobic001G234200 Sobic003G293300--Sobic001G234200 Sobic003G113800 Sobic003G113800 Sobic003G293300--Sobic003G113800 Sobic008G088806 Sobic008G088806 Sobic003G293300--Sobic008G088806 Sobic003G221400 Sobic003G221400 Sobic007G054800--Sobic003G221400 Sobic001G110600 Sobic001G110600 Sobic007G054800--Sobic001G110600 Sobic007G054800--Sobic001G004400 Sobic005G162500 Sobic005G162500 Sobic007G054800--Sobic005G162500 Sobic007G054800--Sobic006G280000 Sobic007G054800--Sobic002G256700 Sobic007G054800--Sobic002G133300 Sobic007G054800--Sobic002G142900 Sobic007G054800--Sobic004G131300 Sobic002G179400 Sobic002G179400 Sobic001G493700--Sobic002G179400 Sobic001G493700--Sobic005G162500 Sobic006G184900 Sobic006G184900 Sobic001G493700--Sobic006G184900 Sobic001G493700--Sobic002G133300 Sobic009G131300 Sobic009G131300 Sobic001G493700--Sobic009G131300 Sobic002G429300 Sobic002G429300 Sobic001G493700--Sobic002G429300 Sobic002G042600 Sobic002G042600 Sobic001G493700--Sobic002G042600 Sobic002G335600 Sobic002G335600 Sobic001G493700--Sobic002G335600 Sobic006G088200 Sobic006G088200 Sobic001G493700--Sobic006G088200 Sobic004G257100--Sobic004G131300 Sobic004G257100--Sobic001G251100 Sobic004G092500 Sobic004G092500 Sobic004G257100--Sobic004G092500 Sobic006G073200 Sobic006G073200 Sobic004G257100--Sobic006G073200 Sobic004G257100--Sobic005G172500 Sobic008G004600 Sobic008G004600 Sobic004G257100--Sobic008G004600 Sobic001G227400 Sobic001G227400 Sobic004G257100--Sobic001G227400 Sobic008G112800 Sobic008G112800 Sobic004G257100--Sobic008G112800 Sobic001G392300 Sobic001G392300 Sobic004G257100--Sobic001G392300 Sobic003G379200--Sobic006G261400 Sobic009G044800 Sobic009G044800 Sobic003G379200--Sobic009G044800 Sobic003G379200--Sobic006G088200 Sobic003G360400 Sobic003G360400 Sobic003G379200--Sobic003G360400 Sobic008G083200 Sobic008G083200 Sobic003G379200--Sobic008G083200 Sobic010G000800 Sobic010G000800 Sobic003G379200--Sobic010G000800 Sobic001G354600 Sobic001G354600 Sobic003G379200--Sobic001G354600 Sobic003G363700 Sobic003G363700 Sobic003G379200--Sobic003G363700 Sobic006G174850 Sobic006G174850 Sobic003G379200--Sobic006G174850
Octagon: transcription factors


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