Gene annotation
Transcriptome id Sobic.003G293300.1
Synonym Sb03g034380
Functional annotation nucleoporin, putative, expressed
UniProt C5XK14
Pfam PF07575
Panther DB PTHR13373 PTHR13373:SF21
NCBI CDD KOG2271; Nuclear pore complex component (sc Nup85)
KEGG Orthology K14304; nuclear pore complex protein Nup85
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G32910 : -
RAP-DB (Rice) LOC_Os01g54240.1 : nucleoporin, putative, expressed
MaizeGDB (Corn) Zm00025a027546
Brachypodium KQK09703
Barley HORVU3Hr1G071090.18 , HORVU3Hr1G071090.19 , HORVU3Hr1G071090.10 , HORVU3Hr1G071090.11 , HORVU3Hr1G071090.12 , HORVU3Hr1G071090.13 , HORVU3Hr1G071090.14 , HORVU3Hr1G071090.15 , HORVU3Hr1G071090.16 , HORVU3Hr1G071090.17 , HORVU3Hr1G071090.20 , HORVU3Hr1G071090.8 , HORVU3Hr1G071090.9 , HORVU3Hr1G071090.2 , HORVU3Hr1G071090.3 , HORVU3Hr1G071090.1 , HORVU3Hr1G071090.6 , HORVU3Hr1G071090.7 , HORVU3Hr1G071090.4 , HORVU3Hr1G071090.5
Wheat TraesCS3B02G308300 , TraesCS3B02G308300 , TraesCS3D02G273800 , TraesCS3D02G273800 , TraesCS3A02G274700
Populus -


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cDNA sequences
Sobic.003G293300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
2 Sobic.006G010000 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
3 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
4 Sobic.001G333100 U-box domain-containing protein, putative, expressed K10597: UBE4B, ubiquitin conjugation factor E4 B
5 Sobic.003G218300 C-5 cytosine-specific DNA methylase, putative, expressed K15336: TRDMT1, tRNA (cytosine38-C5)-methyltransferase
6 Sobic.002G071000 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
7 Sobic.001G234200 actin, putative, expressed K16615: actin-related protein 7, plant
8 Sobic.003G113800 CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
K00924: kinase
9 Sobic.008G088806 - K16280: E3 ubiquitin-protein ligase RGLG
10 Sobic.002G389900 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative, expressed -
11 Sobic.008G135200 importin subunit beta, putative, expressed K14293: KPNB1, importin subunit beta-1
12 Sobic.002G009200 - K15456: protein KTI12
13 Sobic.004G357400 beta-catenin-like protein 1, putative, expressed K12864: beta-catenin-like protein 1
14 Sobic.002G052700 cyclophilin, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
15 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
16 Sobic.006G010400 tRNA-dihydrouridine synthase 3-like, putative, expressed K05544: tRNA-dihydrouridine synthase 3
17 Sobic.003G221400 tetratricopeptide repeat domain containing protein, expressed K00670: NAA30, N-alpha-acetyltransferase 30
18 Sobic.002G383800 GTP-binding protein, putative, expressed K06944: uncharacterized protein
19 Sobic.007G071900 GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
20 Sobic.008G070800 expressed protein -


Gene co-expression network
sample Sobic003G293300 Sobic003G293300 Sobic001G251100 Sobic001G251100 Sobic003G293300--Sobic001G251100 Sobic006G010000 Sobic006G010000 Sobic003G293300--Sobic006G010000 Sobic002G020700 Sobic002G020700 Sobic003G293300--Sobic002G020700 Sobic001G333100 Sobic001G333100 Sobic003G293300--Sobic001G333100 Sobic003G218300 Sobic003G218300 Sobic003G293300--Sobic003G218300 Sobic002G071000 Sobic002G071000 Sobic003G293300--Sobic002G071000 Sobic001G234200 Sobic001G234200 Sobic003G293300--Sobic001G234200 Sobic003G113800 Sobic003G113800 Sobic003G293300--Sobic003G113800 Sobic008G088806 Sobic008G088806 Sobic003G293300--Sobic008G088806 Sobic003G104000 Sobic003G104000 Sobic001G251100--Sobic003G104000 Sobic002G256700 Sobic002G256700 Sobic001G251100--Sobic002G256700 Sobic004G131300 Sobic004G131300 Sobic001G251100--Sobic004G131300 Sobic002G133300 Sobic002G133300 Sobic001G251100--Sobic002G133300 Sobic001G251100--Sobic003G293300 Sobic007G054800 Sobic007G054800 Sobic001G251100--Sobic007G054800 Sobic001G493700 Sobic001G493700 Sobic001G251100--Sobic001G493700 Sobic004G257100 Sobic004G257100 Sobic001G251100--Sobic004G257100 Sobic003G379200 Sobic003G379200 Sobic001G251100--Sobic003G379200 Sobic006G233300 Sobic006G233300 Sobic006G010000--Sobic006G233300 Sobic006G233000 Sobic006G233000 Sobic006G010000--Sobic006G233000 Sobic008G153500 Sobic008G153500 Sobic006G010000--Sobic008G153500 Sobic006G010000--Sobic003G293300 Sobic010G186600 Sobic010G186600 Sobic006G010000--Sobic010G186600 Sobic001G114500 Sobic001G114500 Sobic006G010000--Sobic001G114500 Sobic001G259000 Sobic001G259000 Sobic006G010000--Sobic001G259000 Sobic006G010000--Sobic001G234200 Sobic006G010000--Sobic002G071000 Sobic010G020400 Sobic010G020400 Sobic002G020700--Sobic010G020400 Sobic008G085700 Sobic008G085700 Sobic002G020700--Sobic008G085700 Sobic008G055900 Sobic008G055900 Sobic002G020700--Sobic008G055900 Sobic002G020700--Sobic001G333100 Sobic010G223300 Sobic010G223300 Sobic002G020700--Sobic010G223300 Sobic001G449900 Sobic001G449900 Sobic002G020700--Sobic001G449900 Sobic004G039600 Sobic004G039600 Sobic002G020700--Sobic004G039600 Sobic008G082500 Sobic008G082500 Sobic002G020700--Sobic008G082500 Sobic002G020700--Sobic007G054800 Sobic003G264100 Sobic003G264100 Sobic001G333100--Sobic003G264100 Sobic001G333100--Sobic002G020700 Sobic003G221400 Sobic003G221400 Sobic001G333100--Sobic003G221400 Sobic001G192000 Sobic001G192000 Sobic001G333100--Sobic001G192000 Sobic001G333100--Sobic010G020400 Sobic002G142900 Sobic002G142900 Sobic001G333100--Sobic002G142900 Sobic001G333100--Sobic010G223300 Sobic001G333100--Sobic001G251100 Sobic008G033500 Sobic008G033500 Sobic001G333100--Sobic008G033500 Sobic003G218300--Sobic003G293300 Sobic003G218300--Sobic007G054800 Sobic003G218300--Sobic003G104000 Sobic003G218300--Sobic002G256700 Sobic003G218300--Sobic002G020700 Sobic003G218300--Sobic001G251100 Sobic003G046300 Sobic003G046300 Sobic003G218300--Sobic003G046300 Sobic003G218300--Sobic003G221400 Sobic003G218300--Sobic002G142900 Sobic007G079300 Sobic007G079300 Sobic002G071000--Sobic007G079300 Sobic002G071000--Sobic001G234200 Sobic004G348900 Sobic004G348900 Sobic002G071000--Sobic004G348900 Sobic002G071000--Sobic006G010000 Sobic009G249100 Sobic009G249100 Sobic002G071000--Sobic009G249100 Sobic002G071000--Sobic003G293300 Sobic003G117300 Sobic003G117300 Sobic002G071000--Sobic003G117300 Sobic004G082900 Sobic004G082900 Sobic002G071000--Sobic004G082900 Sobic006G049700 Sobic006G049700 Sobic002G071000--Sobic006G049700 Sobic001G234200--Sobic002G071000 Sobic001G234200--Sobic006G049700 Sobic001G234200--Sobic006G010000 Sobic001G234200--Sobic003G293300 Sobic001G234200--Sobic007G079300 Sobic001G234200--Sobic001G114500 Sobic001G459100 Sobic001G459100 Sobic001G234200--Sobic001G459100 Sobic002G083900 Sobic002G083900 Sobic001G234200--Sobic002G083900 Sobic003G264200 Sobic003G264200 Sobic001G234200--Sobic003G264200 Sobic006G280500 Sobic006G280500 Sobic003G113800--Sobic006G280500 Sobic003G113800--Sobic003G293300 Sobic004G279100 Sobic004G279100 Sobic003G113800--Sobic004G279100 Sobic003G113800--Sobic001G234200 Sobic003G113800--Sobic002G071000 Sobic003G113800--Sobic006G049700 Sobic002G235300 Sobic002G235300 Sobic003G113800--Sobic002G235300 Sobic003G113800--Sobic001G459100 Sobic003G113800--Sobic002G083900 Sobic008G088806--Sobic001G251100 Sobic008G088806--Sobic002G133300 Sobic008G070800 Sobic008G070800 Sobic008G088806--Sobic008G070800 Sobic003G176000 Sobic003G176000 Sobic008G088806--Sobic003G176000 Sobic009G132700 Sobic009G132700 Sobic008G088806--Sobic009G132700 Sobic008G088806--Sobic001G333100 Sobic009G251500 Sobic009G251500 Sobic008G088806--Sobic009G251500 Sobic009G256900 Sobic009G256900 Sobic008G088806--Sobic009G256900 Sobic009G002300 Sobic009G002300 Sobic008G088806--Sobic009G002300
Octagon: transcription factors


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