Gene annotation
Transcriptome id Sobic.001G234200.1
Synonym Sb01g020520, ATARP7, ARP7
Functional annotation actin, putative, expressed
UniProt C5X0D4
Pfam PF00022
Panther DB PTHR11937 PTHR11937:SF257
NCBI CDD KOG0676; Actin and related proteins
KEGG Orthology K16615; actin-related protein 7, plant
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G60830 : actin-related protein 7
RAP-DB (Rice) LOC_Os03g56970.1 : actin, putative, expressed
MaizeGDB (Corn) Zm00025a006766 , Zm00025a017713
Brachypodium KQK12888
Barley HORVU5Hr1G102220.6 , HORVU5Hr1G102220.4 , HORVU5Hr1G102220.5 , HORVU5Hr1G102220.2 , HORVU5Hr1G102220.3 , HORVU5Hr1G102220.1
Wheat TraesCS5B02G422700 , TraesCS5D02G429200 , TraesCS5A02G420600
Populus -


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cDNA sequences
Sobic.001G234200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G071000 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
2 Sobic.006G049700 SAM domain family protein, expressed -
3 Sobic.006G010000 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
4 Sobic.003G293300 nucleoporin, putative, expressed K14304: nuclear pore complex protein Nup85
5 Sobic.007G079300 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2
6 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
7 Sobic.001G459100 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
8 Sobic.002G083900 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
9 Sobic.003G264200 Ser/Thr protein phosphatase family protein, putative, expressed K15498: serine/threonine-protein phosphatase 6 catalytic subunit
10 Sobic.007G167900 signal peptide peptidase domain containing protein, expressed K09598: signal peptide peptidase-like 3
11 Sobic.003G113800 CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
K00924: kinase
12 Sobic.002G262000 ankyrin repeat domain containing protein, putative, expressed -
13 Sobic.004G232800 expressed protein -
14 Sobic.006G233000 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
15 Sobic.006G233300 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
16 Sobic.005G033200 expressed protein -
17 Sobic.001G469200 proteasome subunit, putative, expressed K12178: COPS4, COP9 signalosome complex subunit 4
18 Sobic.009G164000 tentative name(PubMedID : 31536532)@cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
19 Sobic.002G047700 CK1_CaseinKinase_1a.6 - CK1 includes the casein kinase 1 kinases, expressed -
20 Sobic.002G394600 peptidase, T1 family, putative, expressed K02727: 20S proteasome subunit alpha 7


Gene co-expression network
sample Sobic001G234200 Sobic001G234200 Sobic002G071000 Sobic002G071000 Sobic001G234200--Sobic002G071000 Sobic006G049700 Sobic006G049700 Sobic001G234200--Sobic006G049700 Sobic006G010000 Sobic006G010000 Sobic001G234200--Sobic006G010000 Sobic003G293300 Sobic003G293300 Sobic001G234200--Sobic003G293300 Sobic007G079300 Sobic007G079300 Sobic001G234200--Sobic007G079300 Sobic001G114500 Sobic001G114500 Sobic001G234200--Sobic001G114500 Sobic001G459100 Sobic001G459100 Sobic001G234200--Sobic001G459100 Sobic002G083900 Sobic002G083900 Sobic001G234200--Sobic002G083900 Sobic003G264200 Sobic003G264200 Sobic001G234200--Sobic003G264200 Sobic002G071000--Sobic007G079300 Sobic002G071000--Sobic001G234200 Sobic004G348900 Sobic004G348900 Sobic002G071000--Sobic004G348900 Sobic002G071000--Sobic006G010000 Sobic009G249100 Sobic009G249100 Sobic002G071000--Sobic009G249100 Sobic002G071000--Sobic003G293300 Sobic003G117300 Sobic003G117300 Sobic002G071000--Sobic003G117300 Sobic004G082900 Sobic004G082900 Sobic002G071000--Sobic004G082900 Sobic002G071000--Sobic006G049700 Sobic009G222500 Sobic009G222500 Sobic006G049700--Sobic009G222500 Sobic007G166400 Sobic007G166400 Sobic006G049700--Sobic007G166400 Sobic006G049700--Sobic003G264200 Sobic006G101700 Sobic006G101700 Sobic006G049700--Sobic006G101700 Sobic007G167900 Sobic007G167900 Sobic006G049700--Sobic007G167900 Sobic004G226800 Sobic004G226800 Sobic006G049700--Sobic004G226800 Sobic010G027600 Sobic010G027600 Sobic006G049700--Sobic010G027600 Sobic002G113900 Sobic002G113900 Sobic006G049700--Sobic002G113900 Sobic004G356900 Sobic004G356900 Sobic006G049700--Sobic004G356900 Sobic006G233300 Sobic006G233300 Sobic006G010000--Sobic006G233300 Sobic006G233000 Sobic006G233000 Sobic006G010000--Sobic006G233000 Sobic008G153500 Sobic008G153500 Sobic006G010000--Sobic008G153500 Sobic006G010000--Sobic003G293300 Sobic010G186600 Sobic010G186600 Sobic006G010000--Sobic010G186600 Sobic006G010000--Sobic001G114500 Sobic001G259000 Sobic001G259000 Sobic006G010000--Sobic001G259000 Sobic006G010000--Sobic001G234200 Sobic006G010000--Sobic002G071000 Sobic001G251100 Sobic001G251100 Sobic003G293300--Sobic001G251100 Sobic003G293300--Sobic006G010000 Sobic002G020700 Sobic002G020700 Sobic003G293300--Sobic002G020700 Sobic001G333100 Sobic001G333100 Sobic003G293300--Sobic001G333100 Sobic003G218300 Sobic003G218300 Sobic003G293300--Sobic003G218300 Sobic003G293300--Sobic002G071000 Sobic003G293300--Sobic001G234200 Sobic003G113800 Sobic003G113800 Sobic003G293300--Sobic003G113800 Sobic008G088806 Sobic008G088806 Sobic003G293300--Sobic008G088806 Sobic007G079300--Sobic002G071000 Sobic007G079300--Sobic004G348900 Sobic001G283200 Sobic001G283200 Sobic007G079300--Sobic001G283200 Sobic007G079300--Sobic001G234200 Sobic001G206900 Sobic001G206900 Sobic007G079300--Sobic001G206900 Sobic007G079300--Sobic004G082900 Sobic001G444300 Sobic001G444300 Sobic007G079300--Sobic001G444300 Sobic007G079300--Sobic002G020700 Sobic001G014800 Sobic001G014800 Sobic007G079300--Sobic001G014800 Sobic003G132000 Sobic003G132000 Sobic001G114500--Sobic003G132000 Sobic003G121300 Sobic003G121300 Sobic001G114500--Sobic003G121300 Sobic008G103300 Sobic008G103300 Sobic001G114500--Sobic008G103300 Sobic009G164000 Sobic009G164000 Sobic001G114500--Sobic009G164000 Sobic001G473600 Sobic001G473600 Sobic001G114500--Sobic001G473600 Sobic007G084100 Sobic007G084100 Sobic001G114500--Sobic007G084100 Sobic005G160400 Sobic005G160400 Sobic001G114500--Sobic005G160400 Sobic009G258400 Sobic009G258400 Sobic001G114500--Sobic009G258400 Sobic004G156800 Sobic004G156800 Sobic001G114500--Sobic004G156800 Sobic001G459100--Sobic004G226800 Sobic001G459100--Sobic006G049700 Sobic001G459100--Sobic001G234200 Sobic004G232800 Sobic004G232800 Sobic001G459100--Sobic004G232800 Sobic001G459100--Sobic002G113900 Sobic001G459100--Sobic004G356900 Sobic001G459100--Sobic006G233000 Sobic004G077600 Sobic004G077600 Sobic001G459100--Sobic004G077600 Sobic001G119900 Sobic001G119900 Sobic001G459100--Sobic001G119900 Sobic010G085200 Sobic010G085200 Sobic002G083900--Sobic010G085200 Sobic002G083900--Sobic001G234200 Sobic003G167900 Sobic003G167900 Sobic002G083900--Sobic003G167900 Sobic002G083900--Sobic006G010000 Sobic002G083900--Sobic001G251100 Sobic006G036100 Sobic006G036100 Sobic002G083900--Sobic006G036100 Sobic002G083900--Sobic008G088806 Sobic009G238850 Sobic009G238850 Sobic002G083900--Sobic009G238850 Sobic004G086700 Sobic004G086700 Sobic002G083900--Sobic004G086700 Sobic001G031100 Sobic001G031100 Sobic003G264200--Sobic001G031100 Sobic001G080700 Sobic001G080700 Sobic003G264200--Sobic001G080700 Sobic003G264200--Sobic007G166400 Sobic003G264200--Sobic009G222500 Sobic003G264200--Sobic006G049700 Sobic003G264200--Sobic006G101700 Sobic002G047700 Sobic002G047700 Sobic003G264200--Sobic002G047700 Sobic009G165800 Sobic009G165800 Sobic003G264200--Sobic009G165800 Sobic007G166100 Sobic007G166100 Sobic003G264200--Sobic007G166100
Octagon: transcription factors


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