Gene annotation
Transcriptome id Sobic.002G083900.1
Synonym Sb02g007020
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5XDI8
Pfam PF13865 PF00076
Panther DB PTHR19965 PTHR19965:SF26
NCBI CDD KOG0533; RRM motif-containing protein
KEGG Orthology K12881; THOC4, THO complex subunit 4
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G02530 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os07g13280.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a045456 , Zm00025a013365
Brachypodium KQK20293
Barley HORVU2Hr1G056980.8 , HORVU2Hr1G056980.9 , HORVU2Hr1G056980.3 , HORVU2Hr1G056980.1 , HORVU2Hr1G056980.6 , HORVU2Hr1G056980.4 , HORVU2Hr1G056980.5 , HORVU2Hr1G056980.12 , HORVU2Hr1G056980.13
Wheat -
Populus -


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cDNA sequences
Sobic.002G083900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G085200 mediator of RNA polymerase II transcription subunit 6, putative, expressed K15128: mediator of RNA polymerase II transcription subunit 6
2 Sobic.001G234200 actin, putative, expressed K16615: actin-related protein 7, plant
3 Sobic.003G167900 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
4 Sobic.006G010000 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
5 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
6 Sobic.006G036100 expressed protein K11266: MAternally affected uncoordination
7 Sobic.008G088806 - K16280: E3 ubiquitin-protein ligase RGLG
8 Sobic.009G238850 - -
9 Sobic.004G086700 WD domain, G-beta repeat domain containing protein, expressed K13137: STRAP, serine-threonine kinase receptor-associated protein
10 Sobic.001G119900 - K12858: DDX23, ATP-dependent RNA helicase DDX23/PRP28
11 Sobic.002G412700 histone-arginine methyltransferase CARM1, putative, expressed K05931: CARM1, type I protein arginine methyltransferase
12 Sobic.007G084100 expressed protein -
13 Sobic.003G122500 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
14 Sobic.007G165900 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
15 Sobic.001G540800 DNA binding protein, putative, expressed -
16 Sobic.002G209400 transcription initiation factor TFIID subunit 10, putative, expressed K03134: transcription initiation factor TFIID subunit 10
17 Sobic.008G070800 expressed protein -
18 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -
19 Sobic.001G069600 ad-003, putative, expressed K16219: NTMT1, METTL11A, protein N-terminal methyltransferase
20 Sobic.001G102700 metalloendopeptidase/ metallopeptidase/ zinc ion binding protein, putative, expressed K01404: leishmanolysin


Gene co-expression network
sample Sobic002G083900 Sobic002G083900 Sobic010G085200 Sobic010G085200 Sobic002G083900--Sobic010G085200 Sobic001G234200 Sobic001G234200 Sobic002G083900--Sobic001G234200 Sobic003G167900 Sobic003G167900 Sobic002G083900--Sobic003G167900 Sobic006G010000 Sobic006G010000 Sobic002G083900--Sobic006G010000 Sobic001G251100 Sobic001G251100 Sobic002G083900--Sobic001G251100 Sobic006G036100 Sobic006G036100 Sobic002G083900--Sobic006G036100 Sobic008G088806 Sobic008G088806 Sobic002G083900--Sobic008G088806 Sobic009G238850 Sobic009G238850 Sobic002G083900--Sobic009G238850 Sobic004G086700 Sobic004G086700 Sobic002G083900--Sobic004G086700 Sobic005G220000 Sobic005G220000 Sobic010G085200--Sobic005G220000 Sobic002G412700 Sobic002G412700 Sobic010G085200--Sobic002G412700 Sobic006G233000 Sobic006G233000 Sobic010G085200--Sobic006G233000 Sobic009G007700 Sobic009G007700 Sobic010G085200--Sobic009G007700 Sobic010G279700 Sobic010G279700 Sobic010G085200--Sobic010G279700 Sobic010G239800 Sobic010G239800 Sobic010G085200--Sobic010G239800 Sobic007G011600 Sobic007G011600 Sobic010G085200--Sobic007G011600 Sobic003G314700 Sobic003G314700 Sobic010G085200--Sobic003G314700 Sobic003G209400 Sobic003G209400 Sobic010G085200--Sobic003G209400 Sobic002G071000 Sobic002G071000 Sobic001G234200--Sobic002G071000 Sobic006G049700 Sobic006G049700 Sobic001G234200--Sobic006G049700 Sobic001G234200--Sobic006G010000 Sobic003G293300 Sobic003G293300 Sobic001G234200--Sobic003G293300 Sobic007G079300 Sobic007G079300 Sobic001G234200--Sobic007G079300 Sobic001G114500 Sobic001G114500 Sobic001G234200--Sobic001G114500 Sobic001G459100 Sobic001G459100 Sobic001G234200--Sobic001G459100 Sobic001G234200--Sobic002G083900 Sobic003G264200 Sobic003G264200 Sobic001G234200--Sobic003G264200 Sobic006G073200 Sobic006G073200 Sobic003G167900--Sobic006G073200 Sobic003G167900--Sobic002G083900 Sobic008G157200 Sobic008G157200 Sobic003G167900--Sobic008G157200 Sobic003G167900--Sobic002G412700 Sobic001G250700 Sobic001G250700 Sobic003G167900--Sobic001G250700 Sobic001G248100 Sobic001G248100 Sobic003G167900--Sobic001G248100 Sobic008G000400 Sobic008G000400 Sobic003G167900--Sobic008G000400 Sobic006G035500 Sobic006G035500 Sobic003G167900--Sobic006G035500 Sobic010G206300 Sobic010G206300 Sobic003G167900--Sobic010G206300 Sobic006G233300 Sobic006G233300 Sobic006G010000--Sobic006G233300 Sobic006G010000--Sobic006G233000 Sobic008G153500 Sobic008G153500 Sobic006G010000--Sobic008G153500 Sobic006G010000--Sobic003G293300 Sobic010G186600 Sobic010G186600 Sobic006G010000--Sobic010G186600 Sobic006G010000--Sobic001G114500 Sobic001G259000 Sobic001G259000 Sobic006G010000--Sobic001G259000 Sobic006G010000--Sobic001G234200 Sobic006G010000--Sobic002G071000 Sobic003G104000 Sobic003G104000 Sobic001G251100--Sobic003G104000 Sobic002G256700 Sobic002G256700 Sobic001G251100--Sobic002G256700 Sobic004G131300 Sobic004G131300 Sobic001G251100--Sobic004G131300 Sobic002G133300 Sobic002G133300 Sobic001G251100--Sobic002G133300 Sobic001G251100--Sobic003G293300 Sobic007G054800 Sobic007G054800 Sobic001G251100--Sobic007G054800 Sobic001G493700 Sobic001G493700 Sobic001G251100--Sobic001G493700 Sobic004G257100 Sobic004G257100 Sobic001G251100--Sobic004G257100 Sobic003G379200 Sobic003G379200 Sobic001G251100--Sobic003G379200 Sobic010G174700 Sobic010G174700 Sobic006G036100--Sobic010G174700 Sobic001G540800 Sobic001G540800 Sobic006G036100--Sobic001G540800 Sobic010G053600 Sobic010G053600 Sobic006G036100--Sobic010G053600 Sobic001G004400 Sobic001G004400 Sobic006G036100--Sobic001G004400 Sobic002G391600 Sobic002G391600 Sobic006G036100--Sobic002G391600 Sobic006G036100--Sobic002G133300 Sobic003G266001 Sobic003G266001 Sobic006G036100--Sobic003G266001 Sobic003G294600 Sobic003G294600 Sobic006G036100--Sobic003G294600 Sobic001G352900 Sobic001G352900 Sobic006G036100--Sobic001G352900 Sobic008G088806--Sobic001G251100 Sobic008G088806--Sobic002G133300 Sobic008G070800 Sobic008G070800 Sobic008G088806--Sobic008G070800 Sobic003G176000 Sobic003G176000 Sobic008G088806--Sobic003G176000 Sobic009G132700 Sobic009G132700 Sobic008G088806--Sobic009G132700 Sobic001G333100 Sobic001G333100 Sobic008G088806--Sobic001G333100 Sobic009G251500 Sobic009G251500 Sobic008G088806--Sobic009G251500 Sobic009G256900 Sobic009G256900 Sobic008G088806--Sobic009G256900 Sobic009G002300 Sobic009G002300 Sobic008G088806--Sobic009G002300 Sobic010G262000 Sobic010G262000 Sobic009G238850--Sobic010G262000 Sobic001G186800 Sobic001G186800 Sobic009G238850--Sobic001G186800 Sobic009G238850--Sobic004G257100 Sobic001G298600 Sobic001G298600 Sobic009G238850--Sobic001G298600 Sobic001G281600 Sobic001G281600 Sobic009G238850--Sobic001G281600 Sobic008G004600 Sobic008G004600 Sobic009G238850--Sobic008G004600 Sobic002G359400 Sobic002G359400 Sobic009G238850--Sobic002G359400 Sobic008G051200 Sobic008G051200 Sobic009G238850--Sobic008G051200 Sobic006G032900 Sobic006G032900 Sobic009G238850--Sobic006G032900 Sobic001G043800 Sobic001G043800 Sobic004G086700--Sobic001G043800 Sobic001G069600 Sobic001G069600 Sobic004G086700--Sobic001G069600 Sobic004G086700--Sobic008G051200 Sobic010G265300 Sobic010G265300 Sobic004G086700--Sobic010G265300 Sobic010G186000 Sobic010G186000 Sobic004G086700--Sobic010G186000 Sobic007G136800 Sobic007G136800 Sobic004G086700--Sobic007G136800 Sobic004G086700--Sobic009G002300 Sobic003G122500 Sobic003G122500 Sobic004G086700--Sobic003G122500 Sobic002G166300 Sobic002G166300 Sobic004G086700--Sobic002G166300
Octagon: transcription factors


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