Gene annotation
Transcriptome id Sobic.007G165900.1
Synonym Sb07g023880, UCH2
Functional annotation ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
UniProt C5YMV1
Pfam PF01088
Panther DB PTHR10589 PTHR10589:SF30
NCBI CDD KOG2778; Ubiquitin C-terminal hydrolase
KEGG Orthology K05610; UCHL5, ubiquitin carboxyl-terminal hydrolase L5
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process GO:0005622intracellular GO:0004843thiol-dependent ubiquitin-specific protease activity


Orthologs (automatic annotation)
TAIR AT1G65650 : Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1
RAP-DB (Rice) LOC_Os02g08370.1 : ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
MaizeGDB (Corn) Zm00025a030523 , Zm00025a005558
Brachypodium KQJ93652
Barley HORVU6Hr1G083540.34 , HORVU6Hr1G083540.30 , HORVU6Hr1G083540.31 , HORVU6Hr1G083540.32 , HORVU6Hr1G083540.33 , HORVU6Hr1G083540.4 , HORVU6Hr1G083540.5 , HORVU6Hr1G083540.6 , HORVU6Hr1G083540.7 , HORVU6Hr1G083540.1 , HORVU6Hr1G083540.2 , HORVU6Hr1G083540.3 , HORVU6Hr1G083540.8 , HORVU6Hr1G083540.9 , HORVU6Hr1G083540.16 , HORVU6Hr1G083540.17 , HORVU6Hr1G083540.14 , HORVU6Hr1G083540.15 , HORVU6Hr1G083540.12 , HORVU6Hr1G083540.13 , HORVU6Hr1G083540.10 , HORVU6Hr1G083540.11 , HORVU6Hr1G083540.18 , HORVU6Hr1G083540.19 , HORVU6Hr1G083540.29 , HORVU6Hr1G083540.28 , HORVU6Hr1G083540.23 , HORVU6Hr1G083540.22 , HORVU6Hr1G083540.27 , HORVU6Hr1G083540.26 , HORVU6Hr1G083540.25 , HORVU6Hr1G083540.24 , HORVU6Hr1G083540.21 , HORVU6Hr1G083540.20
Wheat TraesCS6A02G147800 , TraesCS6B02G176100 , TraesCS6D02G137100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -
2 Sobic.006G261400 peptidase, trypsin-like serine and cysteine proteases, putative, expressed -
3 Sobic.008G046500 Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
4 Sobic.004G131800 sirohydrochlorin ferrochelatase, putative, expressed -
5 Sobic.006G127600 signal peptide peptidase-like 2B, putative, expressed K09597: signal peptide peptidase-like 2B
6 Sobic.001G361300 CDPK - calcium/calmodulin dependent serine/threonine protein kinase 1(PubMedID : 31721651)@CAMK_CAMK_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
7 Sobic.001G226700 WD repeat-containing protein, putative, expressed -
8 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
9 Sobic.010G009800 OsFBX182 - F-box domain containing protein, expressed -
10 Sobic.010G265300 AAA-type ATPase family protein, putative, expressed -
11 Sobic.001G515000 protein-S-isoprenylcysteine O-methyltransferase. tax, putative, expressed K00587: ICMT, protein-S-isoprenylcysteine O-methyltransferase
12 Sobic.003G176000 lipase family protein, putative, expressed -
13 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
14 Sobic.002G425500 ATPOT1, putative, expressed -
15 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -
16 Sobic.002G170200 zinc finger family protein, putative, expressed -
17 Sobic.002G134600 nucleic acid binding protein, putative, expressed -
18 Sobic.006G270600 PSF1 - Putative GINS complex subunit, expressed K10732: GINS1, GINS complex subunit 1
19 Sobic.003G379200 wound-responsive family protein, putative, expressed -
20 Sobic.009G131900 - K18177: cytochrome c oxidase assembly factor 4


Gene co-expression network
sample Sobic007G165900 Sobic007G165900 Sobic004G257100 Sobic004G257100 Sobic007G165900--Sobic004G257100 Sobic006G261400 Sobic006G261400 Sobic007G165900--Sobic006G261400 Sobic008G046500 Sobic008G046500 Sobic007G165900--Sobic008G046500 Sobic004G131800 Sobic004G131800 Sobic007G165900--Sobic004G131800 Sobic006G127600 Sobic006G127600 Sobic007G165900--Sobic006G127600 Sobic001G361300 Sobic001G361300 Sobic007G165900--Sobic001G361300 Sobic001G226700 Sobic001G226700 Sobic007G165900--Sobic001G226700 Sobic001G251100 Sobic001G251100 Sobic007G165900--Sobic001G251100 Sobic010G009800 Sobic010G009800 Sobic007G165900--Sobic010G009800 Sobic004G131300 Sobic004G131300 Sobic004G257100--Sobic004G131300 Sobic004G257100--Sobic001G251100 Sobic004G092500 Sobic004G092500 Sobic004G257100--Sobic004G092500 Sobic006G073200 Sobic006G073200 Sobic004G257100--Sobic006G073200 Sobic005G172500 Sobic005G172500 Sobic004G257100--Sobic005G172500 Sobic008G004600 Sobic008G004600 Sobic004G257100--Sobic008G004600 Sobic001G227400 Sobic001G227400 Sobic004G257100--Sobic001G227400 Sobic008G112800 Sobic008G112800 Sobic004G257100--Sobic008G112800 Sobic001G392300 Sobic001G392300 Sobic004G257100--Sobic001G392300 Sobic003G379200 Sobic003G379200 Sobic006G261400--Sobic003G379200 Sobic006G261400--Sobic006G127600 Sobic006G267600 Sobic006G267600 Sobic006G261400--Sobic006G267600 Sobic003G104000 Sobic003G104000 Sobic006G261400--Sobic003G104000 Sobic010G000800 Sobic010G000800 Sobic006G261400--Sobic010G000800 Sobic002G048700 Sobic002G048700 Sobic006G261400--Sobic002G048700 Sobic001G051700 Sobic001G051700 Sobic006G261400--Sobic001G051700 Sobic006G261400--Sobic004G131300 Sobic003G296900 Sobic003G296900 Sobic006G261400--Sobic003G296900 Sobic001G007000 Sobic001G007000 Sobic008G046500--Sobic001G007000 Sobic006G200600 Sobic006G200600 Sobic008G046500--Sobic006G200600 Sobic001G389100 Sobic001G389100 Sobic008G046500--Sobic001G389100 Sobic007G093800 Sobic007G093800 Sobic008G046500--Sobic007G093800 Sobic010G251000 Sobic010G251000 Sobic008G046500--Sobic010G251000 Sobic008G046500--Sobic004G092500 Sobic004G286500 Sobic004G286500 Sobic008G046500--Sobic004G286500 Sobic009G068500 Sobic009G068500 Sobic008G046500--Sobic009G068500 Sobic003G102400 Sobic003G102400 Sobic008G046500--Sobic003G102400 Sobic003G176000 Sobic003G176000 Sobic004G131800--Sobic003G176000 Sobic002G211800 Sobic002G211800 Sobic004G131800--Sobic002G211800 Sobic002G170200 Sobic002G170200 Sobic004G131800--Sobic002G170200 Sobic004G131800--Sobic006G127600 Sobic010G032900 Sobic010G032900 Sobic004G131800--Sobic010G032900 Sobic002G344000 Sobic002G344000 Sobic004G131800--Sobic002G344000 Sobic006G056700 Sobic006G056700 Sobic004G131800--Sobic006G056700 Sobic001G178300 Sobic001G178300 Sobic004G131800--Sobic001G178300 Sobic002G294800 Sobic002G294800 Sobic004G131800--Sobic002G294800 Sobic007G162100 Sobic007G162100 Sobic006G127600--Sobic007G162100 Sobic006G127600--Sobic006G261400 Sobic008G157200 Sobic008G157200 Sobic006G127600--Sobic008G157200 Sobic009G256900 Sobic009G256900 Sobic006G127600--Sobic009G256900 Sobic006G127600--Sobic010G000800 Sobic006G127600--Sobic001G251100 Sobic001G333100 Sobic001G333100 Sobic006G127600--Sobic001G333100 Sobic006G127600--Sobic003G379200 Sobic006G131000 Sobic006G131000 Sobic006G127600--Sobic006G131000 Sobic001G361300--Sobic007G165900 Sobic004G316700 Sobic004G316700 Sobic001G361300--Sobic004G316700 Sobic001G361300--Sobic006G261400 Sobic006G250300 Sobic006G250300 Sobic001G361300--Sobic006G250300 Sobic001G456300 Sobic001G456300 Sobic001G361300--Sobic001G456300 Sobic001G361300--Sobic010G009800 Sobic001G361300--Sobic004G286500 Sobic001G361300--Sobic003G104000 Sobic001G361300--Sobic001G051700 Sobic001G226700--Sobic002G294800 Sobic002G134600 Sobic002G134600 Sobic001G226700--Sobic002G134600 Sobic010G265300 Sobic010G265300 Sobic001G226700--Sobic010G265300 Sobic001G362200 Sobic001G362200 Sobic001G226700--Sobic001G362200 Sobic001G226700--Sobic008G046500 Sobic001G226700--Sobic007G165900 Sobic004G246900 Sobic004G246900 Sobic001G226700--Sobic004G246900 Sobic006G032900 Sobic006G032900 Sobic001G226700--Sobic006G032900 Sobic010G143800 Sobic010G143800 Sobic001G226700--Sobic010G143800 Sobic001G251100--Sobic003G104000 Sobic002G256700 Sobic002G256700 Sobic001G251100--Sobic002G256700 Sobic001G251100--Sobic004G131300 Sobic002G133300 Sobic002G133300 Sobic001G251100--Sobic002G133300 Sobic003G293300 Sobic003G293300 Sobic001G251100--Sobic003G293300 Sobic007G054800 Sobic007G054800 Sobic001G251100--Sobic007G054800 Sobic001G493700 Sobic001G493700 Sobic001G251100--Sobic001G493700 Sobic001G251100--Sobic004G257100 Sobic001G251100--Sobic003G379200 Sobic010G009800--Sobic007G165900 Sobic010G009800--Sobic003G379200 Sobic010G009800--Sobic003G104000 Sobic010G009800--Sobic006G261400 Sobic001G395100 Sobic001G395100 Sobic010G009800--Sobic001G395100 Sobic002G052700 Sobic002G052700 Sobic010G009800--Sobic002G052700 Sobic001G515000 Sobic001G515000 Sobic010G009800--Sobic001G515000 Sobic001G096000 Sobic001G096000 Sobic010G009800--Sobic001G096000 Sobic008G124900 Sobic008G124900 Sobic010G009800--Sobic008G124900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.