Gene annotation
Transcriptome id Sobic.004G131800.1
Synonym ATSIRB, SIRB, Sb04g012200
Functional annotation sirohydrochlorin ferrochelatase, putative, expressed
UniProt A0A194YPF6
Pfam PF01903
Panther DB PTHR33542
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016852; sirohydrochlorin cobaltochelatase activity GO:0009236cobalamin biosynthetic process


Orthologs (automatic annotation)
TAIR AT1G50170 : sirohydrochlorin ferrochelatase B
RAP-DB (Rice) LOC_Os02g19440.1 : sirohydrochlorin ferrochelatase, putative, expressed
MaizeGDB (Corn) Zm00025a011738 , Zm00025a010019
Brachypodium KQJ98016 , KQJ91894
Barley -
Wheat TraesCS6A02G167400 , TraesCS6A02G167400 , TraesCS6B02G194900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G176000 lipase family protein, putative, expressed -
2 Sobic.002G211800 AT-rich interaction region, putative, expressed -
3 Sobic.002G170200 zinc finger family protein, putative, expressed -
4 Sobic.006G127600 signal peptide peptidase-like 2B, putative, expressed K09597: signal peptide peptidase-like 2B
5 Sobic.010G032900 transketolase, putative, expressed K01662: 1-deoxy-D-xylulose-5-phosphate synthase
6 Sobic.002G344000 expressed protein -
7 Sobic.006G056700 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
8 Sobic.001G178300 DNA-binding protein, putative, expressed -
9 Sobic.002G294800 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
10 Sobic.003G355900 prenylated rab acceptor, putative, expressed -
11 Sobic.007G165900 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
12 Sobic.002G325300 acyltransferase, putative, expressed K13506: GPAT3_4, AGPAT9, glycerol-3-phosphate O-acyltransferase 3/4
13 Sobic.001G456300 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
14 Sobic.008G070800 expressed protein -
15 Sobic.005G059800 RNA recognition motif containing protein, putative, expressed K14407: CSTF2, cleavage stimulation factor subunit 2
16 Sobic.001G389100 DUF630/DUF632 domains containing protein, putative, expressed -
17 Sobic.004G004900 prenyltransferase, putative, expressed K14137: protein prenyltransferase alpha subunit repeat containing protein 1
18 Sobic.001G043100 EMB1745, putative, expressed K18723: nucleoporin GLE1
19 Sobic.004G355700 C2 domain containing protein, putative, expressed -
20 Sobic.001G492300 OsPP2Ac-5 - Phosphatase 2A isoform 5 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit


Gene co-expression network
sample Sobic004G131800 Sobic004G131800 Sobic003G176000 Sobic003G176000 Sobic004G131800--Sobic003G176000 Sobic002G211800 Sobic002G211800 Sobic004G131800--Sobic002G211800 Sobic002G170200 Sobic002G170200 Sobic004G131800--Sobic002G170200 Sobic006G127600 Sobic006G127600 Sobic004G131800--Sobic006G127600 Sobic010G032900 Sobic010G032900 Sobic004G131800--Sobic010G032900 Sobic002G344000 Sobic002G344000 Sobic004G131800--Sobic002G344000 Sobic006G056700 Sobic006G056700 Sobic004G131800--Sobic006G056700 Sobic001G178300 Sobic001G178300 Sobic004G131800--Sobic001G178300 Sobic002G294800 Sobic002G294800 Sobic004G131800--Sobic002G294800 Sobic003G176000--Sobic004G131800 Sobic003G176000--Sobic002G344000 Sobic003G176000--Sobic002G211800 Sobic003G176000--Sobic002G170200 Sobic003G176000--Sobic010G032900 Sobic003G253600 Sobic003G253600 Sobic003G176000--Sobic003G253600 Sobic002G325300 Sobic002G325300 Sobic003G176000--Sobic002G325300 Sobic003G176000--Sobic002G294800 Sobic005G059800 Sobic005G059800 Sobic003G176000--Sobic005G059800 Sobic009G165700 Sobic009G165700 Sobic002G211800--Sobic009G165700 Sobic007G031900 Sobic007G031900 Sobic002G211800--Sobic007G031900 Sobic002G211800--Sobic002G344000 Sobic003G166750 Sobic003G166750 Sobic002G211800--Sobic003G166750 Sobic004G023000 Sobic004G023000 Sobic002G211800--Sobic004G023000 Sobic009G132700 Sobic009G132700 Sobic002G211800--Sobic009G132700 Sobic003G170900 Sobic003G170900 Sobic002G211800--Sobic003G170900 Sobic002G211800--Sobic002G294800 Sobic003G362600 Sobic003G362600 Sobic002G211800--Sobic003G362600 Sobic002G170200--Sobic004G131800 Sobic001G283600 Sobic001G283600 Sobic002G170200--Sobic001G283600 Sobic002G170200--Sobic003G176000 Sobic005G198000 Sobic005G198000 Sobic002G170200--Sobic005G198000 Sobic002G170200--Sobic006G056700 Sobic002G170200--Sobic006G127600 Sobic006G039400 Sobic006G039400 Sobic002G170200--Sobic006G039400 Sobic007G162100 Sobic007G162100 Sobic002G170200--Sobic007G162100 Sobic006G261400 Sobic006G261400 Sobic002G170200--Sobic006G261400 Sobic006G127600--Sobic007G162100 Sobic006G127600--Sobic006G261400 Sobic008G157200 Sobic008G157200 Sobic006G127600--Sobic008G157200 Sobic009G256900 Sobic009G256900 Sobic006G127600--Sobic009G256900 Sobic010G000800 Sobic010G000800 Sobic006G127600--Sobic010G000800 Sobic001G251100 Sobic001G251100 Sobic006G127600--Sobic001G251100 Sobic001G333100 Sobic001G333100 Sobic006G127600--Sobic001G333100 Sobic003G379200 Sobic003G379200 Sobic006G127600--Sobic003G379200 Sobic006G131000 Sobic006G131000 Sobic006G127600--Sobic006G131000 Sobic010G032900--Sobic005G059800 Sobic010G139000 Sobic010G139000 Sobic010G032900--Sobic010G139000 Sobic010G032900--Sobic003G170900 Sobic001G194200 Sobic001G194200 Sobic010G032900--Sobic001G194200 Sobic001G002000 Sobic001G002000 Sobic010G032900--Sobic001G002000 Sobic003G011300 Sobic003G011300 Sobic010G032900--Sobic003G011300 Sobic004G291900 Sobic004G291900 Sobic010G032900--Sobic004G291900 Sobic010G032900--Sobic002G294800 Sobic002G134200 Sobic002G134200 Sobic010G032900--Sobic002G134200 Sobic005G100700 Sobic005G100700 Sobic002G344000--Sobic005G100700 Sobic008G044100 Sobic008G044100 Sobic002G344000--Sobic008G044100 Sobic003G360400 Sobic003G360400 Sobic002G344000--Sobic003G360400 Sobic002G344000--Sobic002G211800 Sobic001G230000 Sobic001G230000 Sobic002G344000--Sobic001G230000 Sobic008G113100 Sobic008G113100 Sobic002G344000--Sobic008G113100 Sobic003G398700 Sobic003G398700 Sobic002G344000--Sobic003G398700 Sobic001G354600 Sobic001G354600 Sobic002G344000--Sobic001G354600 Sobic010G206900 Sobic010G206900 Sobic002G344000--Sobic010G206900 Sobic006G096900 Sobic006G096900 Sobic006G056700--Sobic006G096900 Sobic001G456300 Sobic001G456300 Sobic006G056700--Sobic001G456300 Sobic010G237900 Sobic010G237900 Sobic006G056700--Sobic010G237900 Sobic001G275300 Sobic001G275300 Sobic006G056700--Sobic001G275300 Sobic008G063300 Sobic008G063300 Sobic006G056700--Sobic008G063300 Sobic006G056700--Sobic002G170200 Sobic006G056700--Sobic004G131800 Sobic007G159900 Sobic007G159900 Sobic006G056700--Sobic007G159900 Sobic006G056700--Sobic003G360400 Sobic002G256700 Sobic002G256700 Sobic001G178300--Sobic002G256700 Sobic008G002300 Sobic008G002300 Sobic001G178300--Sobic008G002300 Sobic006G250300 Sobic006G250300 Sobic001G178300--Sobic006G250300 Sobic001G178300--Sobic004G131800 Sobic001G493700 Sobic001G493700 Sobic001G178300--Sobic001G493700 Sobic006G088200 Sobic006G088200 Sobic001G178300--Sobic006G088200 Sobic001G178300--Sobic001G275300 Sobic001G178300--Sobic006G056700 Sobic001G537500 Sobic001G537500 Sobic001G178300--Sobic001G537500 Sobic005G027400 Sobic005G027400 Sobic002G294800--Sobic005G027400 Sobic001G241100 Sobic001G241100 Sobic002G294800--Sobic001G241100 Sobic003G355900 Sobic003G355900 Sobic002G294800--Sobic003G355900 Sobic002G294800--Sobic002G211800 Sobic002G294800--Sobic005G059800 Sobic001G261501 Sobic001G261501 Sobic002G294800--Sobic001G261501 Sobic002G294800--Sobic010G032900 Sobic001G389100 Sobic001G389100 Sobic002G294800--Sobic001G389100 Sobic010G013200 Sobic010G013200 Sobic002G294800--Sobic010G013200
Octagon: transcription factors


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