Gene annotation
Transcriptome id Sobic.001G043100.2
Synonym Sb01g003970, emb1745
Functional annotation EMB1745, putative, expressed
UniProt C5WW15
Pfam PF07817
Panther DB PTHR12960 PTHR12960:SF0
NCBI CDD KOG2412; Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor
KEGG Orthology K18723; nucleoporin GLE1
Gene Ontology GO:0016973; poly(A)+ mRNA export from nucleus GO:0005643nuclear pore


Orthologs (automatic annotation)
TAIR AT1G13120 : embryo defective 1745
RAP-DB (Rice) LOC_Os02g38250.1 : EMB1745, putative, expressed
MaizeGDB (Corn) Zm00025a016494 , Zm00025a008715
Brachypodium KQK04090 , KQK04091 , KQK17795 , KQK17794 , PNT75702 , KQK17791 , KQK17790 , KQK17793 , KQK17792
Barley HORVU6Hr1G053730.2 , HORVU6Hr1G053730.3 , HORVU6Hr1G053730.1 , HORVU6Hr1G053730.6 , HORVU6Hr1G053730.7 , HORVU6Hr1G053730.4 , HORVU6Hr1G053730.5 , HORVU6Hr1G053730.8 , HORVU6Hr1G053730.9 , HORVU6Hr1G053730.10 , HORVU6Hr1G053730.11 , HORVU6Hr1G053730.12 , HORVU6Hr1G053730.13 , HORVU6Hr1G053730.14 , HORVU6Hr1G053730.15 , HORVU6Hr1G053730.16 , HORVU6Hr1G053730.17
Wheat TraesCS6D02G193500 , TraesCS6D02G193500 , TraesCS6D02G193500 , TraesCS6B02G239100 , TraesCS6B02G239100 , TraesCS1B02G063500 , TraesCS1D02G049900 , TraesCS1B02G063400 , TraesCS6A02G210300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -
2 Sobic.001G451400 HEAT repeat family protein, putative, expressed K15305: VAC14, vacuole morphology and inheritance protein 14
3 Sobic.003G422500 expressed protein -
4 Sobic.001G128300 chloride channel protein CLC-d, putative, expressed K05016: chloride channel 7
5 Sobic.003G196300 DNA binding protein, putative, expressed -
6 Sobic.003G101400 transcriptional repressor, putative, expressed K11644: paired amphipathic helix protein Sin3a
7 Sobic.006G131000 expressed protein K11968: ariadne-1
8 Sobic.004G004300 expressed protein -
9 Sobic.008G087866 - -
10 Sobic.003G275700 myosin head family protein, expressed K10357: myosin V
11 Sobic.007G172200 inositol or phosphatidylinositol phosphatase/ phosphoric monoester hydrolase, putative, expressed K18081: myotubularin-related protein 1/2
12 Sobic.001G220300 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
13 Sobic.003G313500 MATH domain containing protein, expressed -
14 Sobic.008G132600 expressed protein -
15 Sobic.001G281100 START domain containing protein, expressed -
16 Sobic.004G091100 nuclear protein ZAP-related, putative, expressed K17602: YLP motif-containing protein 1
17 Sobic.010G275500 EF hand family protein, putative, expressed -
18 Sobic.001G251200 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
19 Sobic.002G411600 CW-type Zinc Finger, putative, expressed -
20 Sobic.010G118950 - -


Gene co-expression network
sample Sobic001G043100 Sobic001G043100 Sobic009G165700 Sobic009G165700 Sobic001G043100--Sobic009G165700 Sobic001G451400 Sobic001G451400 Sobic001G043100--Sobic001G451400 Sobic003G422500 Sobic003G422500 Sobic001G043100--Sobic003G422500 Sobic001G128300 Sobic001G128300 Sobic001G043100--Sobic001G128300 Sobic003G196300 Sobic003G196300 Sobic001G043100--Sobic003G196300 Sobic003G101400 Sobic003G101400 Sobic001G043100--Sobic003G101400 Sobic006G131000 Sobic006G131000 Sobic001G043100--Sobic006G131000 Sobic004G004300 Sobic004G004300 Sobic001G043100--Sobic004G004300 Sobic008G087866 Sobic008G087866 Sobic001G043100--Sobic008G087866 Sobic009G165700--Sobic003G422500 Sobic010G247800 Sobic010G247800 Sobic009G165700--Sobic010G247800 Sobic010G206900 Sobic010G206900 Sobic009G165700--Sobic010G206900 Sobic003G166750 Sobic003G166750 Sobic009G165700--Sobic003G166750 Sobic009G165700--Sobic008G087866 Sobic009G165700--Sobic001G451400 Sobic003G170900 Sobic003G170900 Sobic009G165700--Sobic003G170900 Sobic001G534700 Sobic001G534700 Sobic009G165700--Sobic001G534700 Sobic008G001200 Sobic008G001200 Sobic009G165700--Sobic008G001200 Sobic007G008900 Sobic007G008900 Sobic001G451400--Sobic007G008900 Sobic001G451400--Sobic009G165700 Sobic001G441400 Sobic001G441400 Sobic001G451400--Sobic001G441400 Sobic001G389100 Sobic001G389100 Sobic001G451400--Sobic001G389100 Sobic001G451400--Sobic010G247800 Sobic003G404500 Sobic003G404500 Sobic001G451400--Sobic003G404500 Sobic010G226000 Sobic010G226000 Sobic001G451400--Sobic010G226000 Sobic005G027400 Sobic005G027400 Sobic001G451400--Sobic005G027400 Sobic001G451400--Sobic003G422500 Sobic002G411600 Sobic002G411600 Sobic003G422500--Sobic002G411600 Sobic009G191000 Sobic009G191000 Sobic003G422500--Sobic009G191000 Sobic001G289600 Sobic001G289600 Sobic003G422500--Sobic001G289600 Sobic003G422500--Sobic009G165700 Sobic002G008900 Sobic002G008900 Sobic003G422500--Sobic002G008900 Sobic004G034900 Sobic004G034900 Sobic003G422500--Sobic004G034900 Sobic001G289800 Sobic001G289800 Sobic003G422500--Sobic001G289800 Sobic001G540400 Sobic001G540400 Sobic003G422500--Sobic001G540400 Sobic008G132600 Sobic008G132600 Sobic003G422500--Sobic008G132600 Sobic001G128300--Sobic009G165700 Sobic001G128300--Sobic001G451400 Sobic001G251200 Sobic001G251200 Sobic001G128300--Sobic001G251200 Sobic004G091100 Sobic004G091100 Sobic001G128300--Sobic004G091100 Sobic001G128300--Sobic001G043100 Sobic009G109925 Sobic009G109925 Sobic001G128300--Sobic009G109925 Sobic003G198800 Sobic003G198800 Sobic001G128300--Sobic003G198800 Sobic001G128300--Sobic001G441400 Sobic002G211800 Sobic002G211800 Sobic001G128300--Sobic002G211800 Sobic003G196300--Sobic010G206900 Sobic003G196300--Sobic004G034900 Sobic001G194200 Sobic001G194200 Sobic003G196300--Sobic001G194200 Sobic007G063000 Sobic007G063000 Sobic003G196300--Sobic007G063000 Sobic003G196300--Sobic001G289800 Sobic004G276400 Sobic004G276400 Sobic003G196300--Sobic004G276400 Sobic003G196300--Sobic010G247800 Sobic009G256300 Sobic009G256300 Sobic003G196300--Sobic009G256300 Sobic003G196300--Sobic001G534700 Sobic003G101400--Sobic008G132600 Sobic003G101400--Sobic003G422500 Sobic003G101400--Sobic002G411600 Sobic007G062800 Sobic007G062800 Sobic003G101400--Sobic007G062800 Sobic003G101400--Sobic001G540400 Sobic003G101400--Sobic009G191000 Sobic003G101400--Sobic002G008900 Sobic001G290100 Sobic001G290100 Sobic003G101400--Sobic001G290100 Sobic003G229500 Sobic003G229500 Sobic003G101400--Sobic003G229500 Sobic007G218000 Sobic007G218000 Sobic006G131000--Sobic007G218000 Sobic007G132100 Sobic007G132100 Sobic006G131000--Sobic007G132100 Sobic006G163800 Sobic006G163800 Sobic006G131000--Sobic006G163800 Sobic004G039600 Sobic004G039600 Sobic006G131000--Sobic004G039600 Sobic001G096000 Sobic001G096000 Sobic006G131000--Sobic001G096000 Sobic006G174850 Sobic006G174850 Sobic006G131000--Sobic006G174850 Sobic010G275500 Sobic010G275500 Sobic006G131000--Sobic010G275500 Sobic001G369000 Sobic001G369000 Sobic006G131000--Sobic001G369000 Sobic004G178200 Sobic004G178200 Sobic006G131000--Sobic004G178200 Sobic001G281100 Sobic001G281100 Sobic004G004300--Sobic001G281100 Sobic005G026200 Sobic005G026200 Sobic004G004300--Sobic005G026200 Sobic001G534800 Sobic001G534800 Sobic004G004300--Sobic001G534800 Sobic006G126100 Sobic006G126100 Sobic004G004300--Sobic006G126100 Sobic001G117200 Sobic001G117200 Sobic004G004300--Sobic001G117200 Sobic004G004200 Sobic004G004200 Sobic004G004300--Sobic004G004200 Sobic001G415300 Sobic001G415300 Sobic004G004300--Sobic001G415300 Sobic004G004300--Sobic010G275500 Sobic005G003300 Sobic005G003300 Sobic004G004300--Sobic005G003300 Sobic008G087866--Sobic009G165700 Sobic008G087866--Sobic003G422500 Sobic008G087866--Sobic008G001200 Sobic008G087866--Sobic001G117200 Sobic008G087866--Sobic003G166750 Sobic005G001000 Sobic005G001000 Sobic008G087866--Sobic005G001000 Sobic008G087866--Sobic003G170900 Sobic008G087866--Sobic001G194200 Sobic001G370900 Sobic001G370900 Sobic008G087866--Sobic001G370900
Octagon: transcription factors


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