Gene annotation
Transcriptome id Sobic.001G128300.1,Sobic.001G128300.2
Synonym CLC-D, ATCLC-D
Functional annotation chloride channel protein CLC-d, putative, expressed
UniProt A0A1B6QIQ2 , A0A1B6QIQ8
Pfam PF00571 PF00654
Panther DB PTHR11689 PTHR11689:SF92
NCBI CDD -
KEGG Orthology K05016; chloride channel 7
Gene Ontology GO:0016020; membrane GO:0006821chloride transport GO:0005247voltage-gated chloride channel activity


Orthologs (automatic annotation)
TAIR AT5G26240 : chloride channel D
RAP-DB (Rice) LOC_Os03g48940.1 : chloride channel protein CLC-d, putative, expressed
MaizeGDB (Corn) Zm00025a007692
Brachypodium KQK13684 , KQK13683
Barley HORVU0Hr1G040330.12 , HORVU0Hr1G040330.13 , HORVU0Hr1G040330.10 , HORVU0Hr1G040330.11 , HORVU0Hr1G040330.16 , HORVU0Hr1G040330.17 , HORVU0Hr1G040330.14 , HORVU0Hr1G040330.15 , HORVU0Hr1G040330.18 , HORVU0Hr1G040330.8 , HORVU0Hr1G040330.9 , HORVU0Hr1G040330.2 , HORVU0Hr1G040330.3 , HORVU0Hr1G040330.4 , HORVU0Hr1G040330.5 , HORVU0Hr1G040330.6 , HORVU0Hr1G040330.7 , HORVU4Hr1G005590.3 , HORVU4Hr1G005590.2 , HORVU4Hr1G005590.10 , HORVU4Hr1G005590.8 , HORVU4Hr1G005590.9 , HORVU4Hr1G005590.1 , HORVU4Hr1G005590.7 , HORVU4Hr1G005590.6 , HORVU4Hr1G005590.5 , HORVU4Hr1G005590.4
Wheat TraesCS4A02G277600 , TraesCS4A02G277600 , TraesCS4D02G033500 , TraesCS4B02G035500 , TraesCS4B02G035500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -
2 Sobic.001G451400 HEAT repeat family protein, putative, expressed K15305: VAC14, vacuole morphology and inheritance protein 14
3 Sobic.001G251200 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
4 Sobic.004G091100 nuclear protein ZAP-related, putative, expressed K17602: YLP motif-containing protein 1
5 Sobic.001G043100 EMB1745, putative, expressed K18723: nucleoporin GLE1
6 Sobic.009G109925 - -
7 Sobic.003G198800 myosin, putative, expressed K10357: myosin V
8 Sobic.001G441400 transcription factor, putative, expressed K09060: plant G-box-binding factor
9 Sobic.002G211800 AT-rich interaction region, putative, expressed -
10 Sobic.009G201300 - -
11 Sobic.009G074400 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
12 Sobic.001G389100 DUF630/DUF632 domains containing protein, putative, expressed -
13 Sobic.002G370200 agenet domain-containing protein, putative, expressed -
14 Sobic.003G362600 AT hook motif family protein, expressed K15200: general transcription factor 3C polypeptide 2
15 Sobic.003G355900 prenylated rab acceptor, putative, expressed -
16 Sobic.003G275700 myosin head family protein, expressed K10357: myosin V
17 Sobic.008G087866 - -
18 Sobic.003G316500 expressed protein -
19 Sobic.001G100900 OsDegp14 - Putative Deg protease homologue, expressed -
20 Sobic.003G422500 expressed protein -


Gene co-expression network
sample Sobic001G128300 Sobic001G128300 Sobic009G165700 Sobic009G165700 Sobic001G128300--Sobic009G165700 Sobic001G451400 Sobic001G451400 Sobic001G128300--Sobic001G451400 Sobic001G251200 Sobic001G251200 Sobic001G128300--Sobic001G251200 Sobic004G091100 Sobic004G091100 Sobic001G128300--Sobic004G091100 Sobic001G043100 Sobic001G043100 Sobic001G128300--Sobic001G043100 Sobic009G109925 Sobic009G109925 Sobic001G128300--Sobic009G109925 Sobic003G198800 Sobic003G198800 Sobic001G128300--Sobic003G198800 Sobic001G441400 Sobic001G441400 Sobic001G128300--Sobic001G441400 Sobic002G211800 Sobic002G211800 Sobic001G128300--Sobic002G211800 Sobic003G422500 Sobic003G422500 Sobic009G165700--Sobic003G422500 Sobic010G247800 Sobic010G247800 Sobic009G165700--Sobic010G247800 Sobic010G206900 Sobic010G206900 Sobic009G165700--Sobic010G206900 Sobic003G166750 Sobic003G166750 Sobic009G165700--Sobic003G166750 Sobic008G087866 Sobic008G087866 Sobic009G165700--Sobic008G087866 Sobic009G165700--Sobic001G451400 Sobic003G170900 Sobic003G170900 Sobic009G165700--Sobic003G170900 Sobic001G534700 Sobic001G534700 Sobic009G165700--Sobic001G534700 Sobic008G001200 Sobic008G001200 Sobic009G165700--Sobic008G001200 Sobic007G008900 Sobic007G008900 Sobic001G451400--Sobic007G008900 Sobic001G451400--Sobic009G165700 Sobic001G451400--Sobic001G441400 Sobic001G389100 Sobic001G389100 Sobic001G451400--Sobic001G389100 Sobic001G451400--Sobic010G247800 Sobic003G404500 Sobic003G404500 Sobic001G451400--Sobic003G404500 Sobic010G226000 Sobic010G226000 Sobic001G451400--Sobic010G226000 Sobic005G027400 Sobic005G027400 Sobic001G451400--Sobic005G027400 Sobic001G451400--Sobic003G422500 Sobic003G362600 Sobic003G362600 Sobic001G251200--Sobic003G362600 Sobic001G251200--Sobic001G128300 Sobic001G251200--Sobic009G165700 Sobic004G004300 Sobic004G004300 Sobic001G251200--Sobic004G004300 Sobic004G261600 Sobic004G261600 Sobic001G251200--Sobic004G261600 Sobic001G251200--Sobic001G451400 Sobic001G251200--Sobic001G043100 Sobic006G131000 Sobic006G131000 Sobic001G251200--Sobic006G131000 Sobic001G281100 Sobic001G281100 Sobic001G251200--Sobic001G281100 Sobic004G091100--Sobic009G165700 Sobic004G091100--Sobic001G451400 Sobic010G118950 Sobic010G118950 Sobic004G091100--Sobic010G118950 Sobic009G191000 Sobic009G191000 Sobic004G091100--Sobic009G191000 Sobic004G091100--Sobic008G087866 Sobic004G091100--Sobic001G128300 Sobic004G091100--Sobic001G534700 Sobic004G091100--Sobic003G422500 Sobic001G050200 Sobic001G050200 Sobic004G091100--Sobic001G050200 Sobic001G043100--Sobic009G165700 Sobic001G043100--Sobic001G451400 Sobic001G043100--Sobic003G422500 Sobic001G043100--Sobic001G128300 Sobic003G196300 Sobic003G196300 Sobic001G043100--Sobic003G196300 Sobic003G101400 Sobic003G101400 Sobic001G043100--Sobic003G101400 Sobic001G043100--Sobic006G131000 Sobic001G043100--Sobic004G004300 Sobic001G043100--Sobic008G087866 Sobic009G110000 Sobic009G110000 Sobic009G109925--Sobic009G110000 Sobic003G264100 Sobic003G264100 Sobic009G109925--Sobic003G264100 Sobic009G109925--Sobic001G128300 Sobic009G109925--Sobic001G441400 Sobic009G131300 Sobic009G131300 Sobic009G109925--Sobic009G131300 Sobic008G098900 Sobic008G098900 Sobic009G109925--Sobic008G098900 Sobic001G370900 Sobic001G370900 Sobic009G109925--Sobic001G370900 Sobic009G143700 Sobic009G143700 Sobic009G109925--Sobic009G143700 Sobic009G109925--Sobic001G251200 Sobic003G198800--Sobic001G534700 Sobic009G074400 Sobic009G074400 Sobic003G198800--Sobic009G074400 Sobic003G275700 Sobic003G275700 Sobic003G198800--Sobic003G275700 Sobic006G257800 Sobic006G257800 Sobic003G198800--Sobic006G257800 Sobic003G155100 Sobic003G155100 Sobic003G198800--Sobic003G155100 Sobic003G198800--Sobic001G128300 Sobic001G481900 Sobic001G481900 Sobic003G198800--Sobic001G481900 Sobic008G151100 Sobic008G151100 Sobic003G198800--Sobic008G151100 Sobic002G411600 Sobic002G411600 Sobic003G198800--Sobic002G411600 Sobic001G441400--Sobic001G451400 Sobic001G441400--Sobic003G404500 Sobic006G252900 Sobic006G252900 Sobic001G441400--Sobic006G252900 Sobic001G441400--Sobic005G027400 Sobic001G441400--Sobic009G165700 Sobic001G363500 Sobic001G363500 Sobic001G441400--Sobic001G363500 Sobic003G102400 Sobic003G102400 Sobic001G441400--Sobic003G102400 Sobic002G299700 Sobic002G299700 Sobic001G441400--Sobic002G299700 Sobic004G351100 Sobic004G351100 Sobic001G441400--Sobic004G351100 Sobic002G211800--Sobic009G165700 Sobic007G031900 Sobic007G031900 Sobic002G211800--Sobic007G031900 Sobic002G344000 Sobic002G344000 Sobic002G211800--Sobic002G344000 Sobic002G211800--Sobic003G166750 Sobic004G023000 Sobic004G023000 Sobic002G211800--Sobic004G023000 Sobic009G132700 Sobic009G132700 Sobic002G211800--Sobic009G132700 Sobic002G211800--Sobic003G170900 Sobic002G294800 Sobic002G294800 Sobic002G211800--Sobic002G294800 Sobic002G211800--Sobic003G362600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.