Gene annotation
Transcriptome id Sobic.002G211800.2,Sobic.002G211800.1
Synonym Sb02g025515
Functional annotation AT-rich interaction region, putative, expressed
UniProt A0A1B6QCN9 , A0A1B6QCN5
Pfam PF01388
Panther DB PTHR22970 PTHR22970:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT3G43240 : ARID/BRIGHT DNA-binding domain-containing protein
RAP-DB (Rice) LOC_Os09g26390.1,LOC_Os09g26390.3 : AT-rich interaction region, putative, expressed
MaizeGDB (Corn) Zm00025a047122 , Zm00025a047120 , Zm00025a013956
Brachypodium KQJ90354
Barley HORVU5Hr1G063000.22 , HORVU5Hr1G063000.21 , HORVU5Hr1G063000.20 , HORVU5Hr1G063000.12 , HORVU5Hr1G063000.13 , HORVU5Hr1G063000.10 , HORVU5Hr1G063000.11 , HORVU5Hr1G063000.16 , HORVU5Hr1G063000.17 , HORVU5Hr1G063000.14 , HORVU5Hr1G063000.15 , HORVU5Hr1G063000.18 , HORVU5Hr1G063000.19 , HORVU5Hr1G063000.8 , HORVU5Hr1G063000.9 , HORVU5Hr1G063000.1 , HORVU5Hr1G063000.2 , HORVU5Hr1G063000.3 , HORVU5Hr1G063000.4 , HORVU5Hr1G063000.6 , HORVU5Hr1G063000.7
Wheat TraesCS5A02G216100 , TraesCS5A02G216100 , TraesCS5D02G224100 , TraesCS5D02G224100 , TraesCS5B02G214600 , TraesCS5B02G214600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -
2 Sobic.007G031900 OsFBX207 - F-box domain containing protein, expressed -
3 Sobic.002G344000 expressed protein -
4 Sobic.003G166750 - K15188: cyclin T
5 Sobic.004G023000 SAC9, putative, expressed -
6 Sobic.009G132700 - -
7 Sobic.003G170900 - -
8 Sobic.002G294800 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
9 Sobic.003G362600 AT hook motif family protein, expressed K15200: general transcription factor 3C polypeptide 2
10 Sobic.001G451400 HEAT repeat family protein, putative, expressed K15305: VAC14, vacuole morphology and inheritance protein 14
11 Sobic.003G435200 serine/threonine-protein kinase RIO-like, putative, expressed K07179: RIO kinase 2
12 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
13 Sobic.003G398700 expressed protein K15210: snRNA-activating protein complex subunit 3
14 Sobic.001G441400 transcription factor, putative, expressed K09060: plant G-box-binding factor
15 Sobic.009G201300 - -
16 Sobic.001G111850 - -
17 Sobic.007G159900 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
18 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
19 Sobic.001G128300 chloride channel protein CLC-d, putative, expressed K05016: chloride channel 7
20 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R


Gene co-expression network
sample Sobic002G211800 Sobic002G211800 Sobic009G165700 Sobic009G165700 Sobic002G211800--Sobic009G165700 Sobic007G031900 Sobic007G031900 Sobic002G211800--Sobic007G031900 Sobic002G344000 Sobic002G344000 Sobic002G211800--Sobic002G344000 Sobic003G166750 Sobic003G166750 Sobic002G211800--Sobic003G166750 Sobic004G023000 Sobic004G023000 Sobic002G211800--Sobic004G023000 Sobic009G132700 Sobic009G132700 Sobic002G211800--Sobic009G132700 Sobic003G170900 Sobic003G170900 Sobic002G211800--Sobic003G170900 Sobic002G294800 Sobic002G294800 Sobic002G211800--Sobic002G294800 Sobic003G362600 Sobic003G362600 Sobic002G211800--Sobic003G362600 Sobic003G422500 Sobic003G422500 Sobic009G165700--Sobic003G422500 Sobic010G247800 Sobic010G247800 Sobic009G165700--Sobic010G247800 Sobic010G206900 Sobic010G206900 Sobic009G165700--Sobic010G206900 Sobic009G165700--Sobic003G166750 Sobic008G087866 Sobic008G087866 Sobic009G165700--Sobic008G087866 Sobic001G451400 Sobic001G451400 Sobic009G165700--Sobic001G451400 Sobic009G165700--Sobic003G170900 Sobic001G534700 Sobic001G534700 Sobic009G165700--Sobic001G534700 Sobic008G001200 Sobic008G001200 Sobic009G165700--Sobic008G001200 Sobic007G031900--Sobic002G211800 Sobic001G111850 Sobic001G111850 Sobic007G031900--Sobic001G111850 Sobic006G216100 Sobic006G216100 Sobic007G031900--Sobic006G216100 Sobic007G031900--Sobic003G166750 Sobic009G201300 Sobic009G201300 Sobic007G031900--Sobic009G201300 Sobic004G244900 Sobic004G244900 Sobic007G031900--Sobic004G244900 Sobic006G252900 Sobic006G252900 Sobic007G031900--Sobic006G252900 Sobic001G457800 Sobic001G457800 Sobic007G031900--Sobic001G457800 Sobic006G050700 Sobic006G050700 Sobic007G031900--Sobic006G050700 Sobic005G100700 Sobic005G100700 Sobic002G344000--Sobic005G100700 Sobic008G044100 Sobic008G044100 Sobic002G344000--Sobic008G044100 Sobic003G360400 Sobic003G360400 Sobic002G344000--Sobic003G360400 Sobic002G344000--Sobic002G211800 Sobic001G230000 Sobic001G230000 Sobic002G344000--Sobic001G230000 Sobic008G113100 Sobic008G113100 Sobic002G344000--Sobic008G113100 Sobic003G398700 Sobic003G398700 Sobic002G344000--Sobic003G398700 Sobic001G354600 Sobic001G354600 Sobic002G344000--Sobic001G354600 Sobic002G344000--Sobic010G206900 Sobic003G166750--Sobic009G165700 Sobic003G166750--Sobic008G001200 Sobic009G256400 Sobic009G256400 Sobic003G166750--Sobic009G256400 Sobic001G370900 Sobic001G370900 Sobic003G166750--Sobic001G370900 Sobic001G289800 Sobic001G289800 Sobic003G166750--Sobic001G289800 Sobic002G316600 Sobic002G316600 Sobic003G166750--Sobic002G316600 Sobic001G194200 Sobic001G194200 Sobic003G166750--Sobic001G194200 Sobic001G527800 Sobic001G527800 Sobic003G166750--Sobic001G527800 Sobic003G166750--Sobic001G457800 Sobic004G023000--Sobic009G165700 Sobic004G023000--Sobic010G247800 Sobic003G095900 Sobic003G095900 Sobic004G023000--Sobic003G095900 Sobic004G314000 Sobic004G314000 Sobic004G023000--Sobic004G314000 Sobic004G023000--Sobic009G256400 Sobic010G139000 Sobic010G139000 Sobic004G023000--Sobic010G139000 Sobic004G023000--Sobic002G211800 Sobic004G263600 Sobic004G263600 Sobic004G023000--Sobic004G263600 Sobic004G023000--Sobic010G206900 Sobic005G027400 Sobic005G027400 Sobic009G132700--Sobic005G027400 Sobic004G140600 Sobic004G140600 Sobic009G132700--Sobic004G140600 Sobic009G132700--Sobic003G170900 Sobic001G455600 Sobic001G455600 Sobic009G132700--Sobic001G455600 Sobic009G132700--Sobic002G211800 Sobic009G132700--Sobic006G252900 Sobic001G433800 Sobic001G433800 Sobic009G132700--Sobic001G433800 Sobic009G132700--Sobic001G111850 Sobic003G188400 Sobic003G188400 Sobic009G132700--Sobic003G188400 Sobic003G170900--Sobic009G165700 Sobic010G123600 Sobic010G123600 Sobic003G170900--Sobic010G123600 Sobic005G112300 Sobic005G112300 Sobic003G170900--Sobic005G112300 Sobic003G170900--Sobic010G206900 Sobic003G170900--Sobic010G139000 Sobic003G170900--Sobic003G422500 Sobic003G170900--Sobic003G166750 Sobic003G170900--Sobic010G247800 Sobic003G170900--Sobic001G194200 Sobic002G294800--Sobic005G027400 Sobic001G241100 Sobic001G241100 Sobic002G294800--Sobic001G241100 Sobic003G355900 Sobic003G355900 Sobic002G294800--Sobic003G355900 Sobic002G294800--Sobic002G211800 Sobic005G059800 Sobic005G059800 Sobic002G294800--Sobic005G059800 Sobic001G261501 Sobic001G261501 Sobic002G294800--Sobic001G261501 Sobic010G032900 Sobic010G032900 Sobic002G294800--Sobic010G032900 Sobic001G389100 Sobic001G389100 Sobic002G294800--Sobic001G389100 Sobic010G013200 Sobic010G013200 Sobic002G294800--Sobic010G013200 Sobic003G362600--Sobic009G165700 Sobic001G251200 Sobic001G251200 Sobic003G362600--Sobic001G251200 Sobic003G362600--Sobic003G166750 Sobic003G362600--Sobic002G211800 Sobic003G362600--Sobic008G087866 Sobic003G362600--Sobic004G023000 Sobic003G093800 Sobic003G093800 Sobic003G362600--Sobic003G093800 Sobic004G091100 Sobic004G091100 Sobic003G362600--Sobic004G091100 Sobic001G441400 Sobic001G441400 Sobic003G362600--Sobic001G441400
Octagon: transcription factors


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