Gene annotation
Transcriptome id Sobic.003G398700.1
Synonym SRD2, Sb03g043530
Functional annotation expressed protein
UniProt C5XG53
Pfam PF12251
Panther DB PTHR13421 PTHR13421:SF16
NCBI CDD -
KEGG Orthology K15210; snRNA-activating protein complex subunit 3
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G28560 : snRNA activating complex family protein
RAP-DB (Rice) LOC_Os01g68440.1 : expressed protein
MaizeGDB (Corn) Zm00025a039371
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G398700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G257750 - -
2 Sobic.001G456900 expressed protein -
3 Sobic.008G044100 expressed protein -
4 Sobic.010G021500 WD domain, G-beta repeat domain containing protein, expressed -
5 Sobic.007G136800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
6 Sobic.004G185800 expressed protein -
7 Sobic.003G168100 BZIP protein, putative, expressed -
8 Sobic.008G113100 protein binding protein, putative, expressed -
9 Sobic.010G126000 WD-40 repeat family protein, putative, expressed -
10 Sobic.004G244900 expressed protein -
11 Sobic.002G344000 expressed protein -
12 Sobic.006G096900 expressed protein -
13 Sobic.002G211800 AT-rich interaction region, putative, expressed -
14 Sobic.010G243900 OsFBO9 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
15 Sobic.006G216100 expressed protein -
16 Sobic.010G123600 WW domain containing protein, expressed -
17 Sobic.005G059800 RNA recognition motif containing protein, putative, expressed K14407: CSTF2, cleavage stimulation factor subunit 2
18 Sobic.003G340600 VHS and GAT domain containing protein, expressed -
19 Sobic.008G054000 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
20 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R


Gene co-expression network
sample Sobic003G398700 Sobic003G398700 Sobic002G257750 Sobic002G257750 Sobic003G398700--Sobic002G257750 Sobic001G456900 Sobic001G456900 Sobic003G398700--Sobic001G456900 Sobic008G044100 Sobic008G044100 Sobic003G398700--Sobic008G044100 Sobic010G021500 Sobic010G021500 Sobic003G398700--Sobic010G021500 Sobic007G136800 Sobic007G136800 Sobic003G398700--Sobic007G136800 Sobic004G185800 Sobic004G185800 Sobic003G398700--Sobic004G185800 Sobic003G168100 Sobic003G168100 Sobic003G398700--Sobic003G168100 Sobic008G113100 Sobic008G113100 Sobic003G398700--Sobic008G113100 Sobic010G126000 Sobic010G126000 Sobic003G398700--Sobic010G126000 Sobic002G257750--Sobic003G398700 Sobic005G106600 Sobic005G106600 Sobic002G257750--Sobic005G106600 Sobic003G119600 Sobic003G119600 Sobic002G257750--Sobic003G119600 Sobic003G253600 Sobic003G253600 Sobic002G257750--Sobic003G253600 Sobic006G185100 Sobic006G185100 Sobic002G257750--Sobic006G185100 Sobic003G388100 Sobic003G388100 Sobic002G257750--Sobic003G388100 Sobic006G050700 Sobic006G050700 Sobic002G257750--Sobic006G050700 Sobic004G244900 Sobic004G244900 Sobic002G257750--Sobic004G244900 Sobic010G132600 Sobic010G132600 Sobic002G257750--Sobic010G132600 Sobic001G036050 Sobic001G036050 Sobic001G456900--Sobic001G036050 Sobic010G139000 Sobic010G139000 Sobic001G456900--Sobic010G139000 Sobic004G258700 Sobic004G258700 Sobic001G456900--Sobic004G258700 Sobic001G456900--Sobic008G113100 Sobic008G028700 Sobic008G028700 Sobic001G456900--Sobic008G028700 Sobic002G180666 Sobic002G180666 Sobic001G456900--Sobic002G180666 Sobic001G311500 Sobic001G311500 Sobic001G456900--Sobic001G311500 Sobic001G456900--Sobic003G398700 Sobic003G101500 Sobic003G101500 Sobic001G456900--Sobic003G101500 Sobic010G010700 Sobic010G010700 Sobic008G044100--Sobic010G010700 Sobic004G134200 Sobic004G134200 Sobic008G044100--Sobic004G134200 Sobic001G374100 Sobic001G374100 Sobic008G044100--Sobic001G374100 Sobic003G155100 Sobic003G155100 Sobic008G044100--Sobic003G155100 Sobic010G206900 Sobic010G206900 Sobic008G044100--Sobic010G206900 Sobic001G230000 Sobic001G230000 Sobic008G044100--Sobic001G230000 Sobic008G001200 Sobic008G001200 Sobic008G044100--Sobic008G001200 Sobic003G389200 Sobic003G389200 Sobic008G044100--Sobic003G389200 Sobic002G316600 Sobic002G316600 Sobic008G044100--Sobic002G316600 Sobic010G021500--Sobic003G398700 Sobic010G167900 Sobic010G167900 Sobic010G021500--Sobic010G167900 Sobic010G021500--Sobic008G113100 Sobic006G096900 Sobic006G096900 Sobic010G021500--Sobic006G096900 Sobic010G021500--Sobic001G456900 Sobic010G149200 Sobic010G149200 Sobic010G021500--Sobic010G149200 Sobic005G027400 Sobic005G027400 Sobic010G021500--Sobic005G027400 Sobic005G100700 Sobic005G100700 Sobic010G021500--Sobic005G100700 Sobic003G221900 Sobic003G221900 Sobic010G021500--Sobic003G221900 Sobic007G136800--Sobic003G398700 Sobic007G136800--Sobic010G126000 Sobic007G136800--Sobic003G168100 Sobic001G375700 Sobic001G375700 Sobic007G136800--Sobic001G375700 Sobic006G031800 Sobic006G031800 Sobic007G136800--Sobic006G031800 Sobic005G100600 Sobic005G100600 Sobic007G136800--Sobic005G100600 Sobic001G043800 Sobic001G043800 Sobic007G136800--Sobic001G043800 Sobic003G011300 Sobic003G011300 Sobic007G136800--Sobic003G011300 Sobic010G032900 Sobic010G032900 Sobic007G136800--Sobic010G032900 Sobic006G041600 Sobic006G041600 Sobic004G185800--Sobic006G041600 Sobic001G433800 Sobic001G433800 Sobic004G185800--Sobic001G433800 Sobic004G185800--Sobic003G398700 Sobic003G188400 Sobic003G188400 Sobic004G185800--Sobic003G188400 Sobic008G063300 Sobic008G063300 Sobic004G185800--Sobic008G063300 Sobic004G185800--Sobic006G096900 Sobic006G252900 Sobic006G252900 Sobic004G185800--Sobic006G252900 Sobic004G185800--Sobic003G168100 Sobic002G425500 Sobic002G425500 Sobic004G185800--Sobic002G425500 Sobic003G168100--Sobic010G126000 Sobic005G167700 Sobic005G167700 Sobic003G168100--Sobic005G167700 Sobic009G129100 Sobic009G129100 Sobic003G168100--Sobic009G129100 Sobic003G168100--Sobic008G044100 Sobic003G168100--Sobic001G433800 Sobic003G168100--Sobic003G398700 Sobic003G168100--Sobic004G244900 Sobic003G168100--Sobic004G134200 Sobic003G168100--Sobic004G185800 Sobic008G113100--Sobic004G258700 Sobic008G113100--Sobic008G028700 Sobic005G064000 Sobic005G064000 Sobic008G113100--Sobic005G064000 Sobic007G065400 Sobic007G065400 Sobic008G113100--Sobic007G065400 Sobic008G113100--Sobic001G456900 Sobic009G024000 Sobic009G024000 Sobic008G113100--Sobic009G024000 Sobic009G040600 Sobic009G040600 Sobic008G113100--Sobic009G040600 Sobic004G208900 Sobic004G208900 Sobic008G113100--Sobic004G208900 Sobic004G039200 Sobic004G039200 Sobic008G113100--Sobic004G039200 Sobic010G126000--Sobic003G168100 Sobic010G126000--Sobic008G044100 Sobic002G127550 Sobic002G127550 Sobic010G126000--Sobic002G127550 Sobic010G126000--Sobic005G167700 Sobic001G227200 Sobic001G227200 Sobic010G126000--Sobic001G227200 Sobic010G126000--Sobic006G096900 Sobic010G126000--Sobic003G398700 Sobic001G219600 Sobic001G219600 Sobic010G126000--Sobic001G219600 Sobic010G126000--Sobic007G136800
Octagon: transcription factors


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