Gene annotation
Transcriptome id Sobic.003G340600.2,Sobic.003G340600.1
Synonym Sb03g038450
Functional annotation VHS and GAT domain containing protein, expressed
UniProt A0A1W0W073 , A0A1B6Q6T4
Pfam PF00790 PF03127 PF03127 PF00790
Panther DB PTHR13856 PTHR13856:SF85
NCBI CDD KOG1087; Cytosolic sorting protein GGA2/TOM1
KEGG Orthology -
Gene Ontology GO:0006886; intracellular protein transport GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT2G38410 : ENTH/VHS/GAT family protein
RAP-DB (Rice) LOC_Os01g61030.1 : VHS and GAT domain containing protein, expressed
MaizeGDB (Corn) Zm00025a043976 , Zm00025a043972 , Zm00025a027031
Brachypodium KQK10380
Barley HORVU3Hr1G088350.1 , HORVU3Hr1G088350.3 , HORVU3Hr1G088350.2 , HORVU3Hr1G088350.5 , HORVU3Hr1G088350.4 , HORVU3Hr1G088350.7 , HORVU3Hr1G088350.6 , HORVU1Hr1G070230.10 , HORVU1Hr1G070230.7 , HORVU1Hr1G070230.6 , HORVU1Hr1G070230.5 , HORVU1Hr1G070230.4 , HORVU1Hr1G070230.3 , HORVU1Hr1G070230.2 , HORVU1Hr1G070230.1 , HORVU1Hr1G070230.9 , HORVU1Hr1G070230.8
Wheat TraesCS1B02G308600 , TraesCS1B02G308600 , TraesCS1D02G292400 , TraesCS1D02G292400 , TraesCS1D02G292400 , TraesCS1A02G298900 , TraesCS3B02G378400 , TraesCS3A02G346600 , TraesCS3D02G340300 , TraesCS3D02G340300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G172300 peroxisome assembly protein, putative, expressed K06664: PEX2, peroxin-2
2 Sobic.003G221900 helix-loop-helix DNA-binding domain containing protein, expressed -
3 Sobic.002G167500 expressed protein -
4 Sobic.010G092300 N-rich protein, putative, expressed -
5 Sobic.003G398700 expressed protein K15210: snRNA-activating protein complex subunit 3
6 Sobic.009G162600 OsFtsH8 FtsH protease, homologue of AtFtsH3/10, expressed K08956: AFG3 family protein
7 Sobic.004G181600 calmodulin binding protein, putative, expressed -
8 Sobic.010G013200 CPuORF21 - conserved peptide uORF-containing transcript, expressed K08829: male germ cell-associated kinase
9 Sobic.006G086500 STE_MEKK_ste11_MAP3K.16 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
10 Sobic.004G244900 expressed protein -
11 Sobic.010G149200 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
12 Sobic.004G026500 expressed protein -
13 Sobic.001G072700 expressed protein -
14 Sobic.001G049500 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
15 Sobic.002G321901 - -
16 Sobic.002G294800 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
17 Sobic.007G136800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
18 Sobic.010G265300 AAA-type ATPase family protein, putative, expressed -
19 Sobic.002G345700 insulin-degrading enzyme, putative, expressed K01408: IDE, insulysin
20 Sobic.006G173600 serine racemase, putative, expressed K12235: serine racemase


Gene co-expression network
sample Sobic003G340600 Sobic003G340600 Sobic008G172300 Sobic008G172300 Sobic003G340600--Sobic008G172300 Sobic003G221900 Sobic003G221900 Sobic003G340600--Sobic003G221900 Sobic002G167500 Sobic002G167500 Sobic003G340600--Sobic002G167500 Sobic010G092300 Sobic010G092300 Sobic003G340600--Sobic010G092300 Sobic003G398700 Sobic003G398700 Sobic003G340600--Sobic003G398700 Sobic009G162600 Sobic009G162600 Sobic003G340600--Sobic009G162600 Sobic004G181600 Sobic004G181600 Sobic003G340600--Sobic004G181600 Sobic010G013200 Sobic010G013200 Sobic003G340600--Sobic010G013200 Sobic006G086500 Sobic006G086500 Sobic003G340600--Sobic006G086500 Sobic004G026500 Sobic004G026500 Sobic008G172300--Sobic004G026500 Sobic009G014100 Sobic009G014100 Sobic008G172300--Sobic009G014100 Sobic008G172300--Sobic003G340600 Sobic002G345700 Sobic002G345700 Sobic008G172300--Sobic002G345700 Sobic001G124100 Sobic001G124100 Sobic008G172300--Sobic001G124100 Sobic010G197000 Sobic010G197000 Sobic008G172300--Sobic010G197000 Sobic005G142800 Sobic005G142800 Sobic008G172300--Sobic005G142800 Sobic002G168300 Sobic002G168300 Sobic008G172300--Sobic002G168300 Sobic008G172300--Sobic002G167500 Sobic001G122832 Sobic001G122832 Sobic003G221900--Sobic001G122832 Sobic003G316500 Sobic003G316500 Sobic003G221900--Sobic003G316500 Sobic003G221900--Sobic003G340600 Sobic001G389100 Sobic001G389100 Sobic003G221900--Sobic001G389100 Sobic010G021500 Sobic010G021500 Sobic003G221900--Sobic010G021500 Sobic006G133900 Sobic006G133900 Sobic003G221900--Sobic006G133900 Sobic010G147100 Sobic010G147100 Sobic003G221900--Sobic010G147100 Sobic001G332500 Sobic001G332500 Sobic003G221900--Sobic001G332500 Sobic003G029700 Sobic003G029700 Sobic003G221900--Sobic003G029700 Sobic002G167500--Sobic003G340600 Sobic002G167500--Sobic008G172300 Sobic003G311900 Sobic003G311900 Sobic002G167500--Sobic003G311900 Sobic002G131500 Sobic002G131500 Sobic002G167500--Sobic002G131500 Sobic005G026000 Sobic005G026000 Sobic002G167500--Sobic005G026000 Sobic002G167500--Sobic004G026500 Sobic010G265300 Sobic010G265300 Sobic002G167500--Sobic010G265300 Sobic001G300100 Sobic001G300100 Sobic002G167500--Sobic001G300100 Sobic001G136800 Sobic001G136800 Sobic002G167500--Sobic001G136800 Sobic010G092300--Sobic003G340600 Sobic005G160400 Sobic005G160400 Sobic010G092300--Sobic005G160400 Sobic010G092300--Sobic010G265300 Sobic003G264200 Sobic003G264200 Sobic010G092300--Sobic003G264200 Sobic010G092300--Sobic002G167500 Sobic001G019800 Sobic001G019800 Sobic010G092300--Sobic001G019800 Sobic010G092300--Sobic009G162600 Sobic007G078500 Sobic007G078500 Sobic010G092300--Sobic007G078500 Sobic001G080700 Sobic001G080700 Sobic010G092300--Sobic001G080700 Sobic002G257750 Sobic002G257750 Sobic003G398700--Sobic002G257750 Sobic001G456900 Sobic001G456900 Sobic003G398700--Sobic001G456900 Sobic008G044100 Sobic008G044100 Sobic003G398700--Sobic008G044100 Sobic003G398700--Sobic010G021500 Sobic007G136800 Sobic007G136800 Sobic003G398700--Sobic007G136800 Sobic004G185800 Sobic004G185800 Sobic003G398700--Sobic004G185800 Sobic003G168100 Sobic003G168100 Sobic003G398700--Sobic003G168100 Sobic008G113100 Sobic008G113100 Sobic003G398700--Sobic008G113100 Sobic010G126000 Sobic010G126000 Sobic003G398700--Sobic010G126000 Sobic009G162600--Sobic003G340600 Sobic002G349100 Sobic002G349100 Sobic009G162600--Sobic002G349100 Sobic009G103000 Sobic009G103000 Sobic009G162600--Sobic009G103000 Sobic002G072400 Sobic002G072400 Sobic009G162600--Sobic002G072400 Sobic002G275100 Sobic002G275100 Sobic009G162600--Sobic002G275100 Sobic003G105900 Sobic003G105900 Sobic009G162600--Sobic003G105900 Sobic008G089900 Sobic008G089900 Sobic009G162600--Sobic008G089900 Sobic004G300100 Sobic004G300100 Sobic009G162600--Sobic004G300100 Sobic003G029500 Sobic003G029500 Sobic009G162600--Sobic003G029500 Sobic004G181600--Sobic006G133900 Sobic006G065600 Sobic006G065600 Sobic004G181600--Sobic006G065600 Sobic002G104100 Sobic002G104100 Sobic004G181600--Sobic002G104100 Sobic005G075100 Sobic005G075100 Sobic004G181600--Sobic005G075100 Sobic007G167100 Sobic007G167100 Sobic004G181600--Sobic007G167100 Sobic008G130100 Sobic008G130100 Sobic004G181600--Sobic008G130100 Sobic006G219600 Sobic006G219600 Sobic004G181600--Sobic006G219600 Sobic003G155100 Sobic003G155100 Sobic004G181600--Sobic003G155100 Sobic004G178500 Sobic004G178500 Sobic004G181600--Sobic004G178500 Sobic001G268200 Sobic001G268200 Sobic010G013200--Sobic001G268200 Sobic008G081300 Sobic008G081300 Sobic010G013200--Sobic008G081300 Sobic002G311100 Sobic002G311100 Sobic010G013200--Sobic002G311100 Sobic001G049500 Sobic001G049500 Sobic010G013200--Sobic001G049500 Sobic002G294800 Sobic002G294800 Sobic010G013200--Sobic002G294800 Sobic010G013200--Sobic006G086500 Sobic009G201300 Sobic009G201300 Sobic010G013200--Sobic009G201300 Sobic009G074400 Sobic009G074400 Sobic010G013200--Sobic009G074400 Sobic010G013200--Sobic010G147100 Sobic001G191600 Sobic001G191600 Sobic006G086500--Sobic001G191600 Sobic006G086500--Sobic010G013200 Sobic006G086500--Sobic002G294800 Sobic006G086500--Sobic001G268200 Sobic006G086500--Sobic008G172300 Sobic006G086500--Sobic003G221900 Sobic006G086500--Sobic003G340600 Sobic004G181700 Sobic004G181700 Sobic006G086500--Sobic004G181700 Sobic006G086500--Sobic001G389100
Octagon: transcription factors


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