Gene annotation
Transcriptome id Sobic.009G162600.1
Synonym Sb09g022490, ftsh3
Functional annotation OsFtsH8 FtsH protease, homologue of AtFtsH3/10, expressed
UniProt C5YZ91
Pfam PF06480 PF00004 PF01434
Panther DB PTHR23076 PTHR23076:SF69
NCBI CDD -
KEGG Orthology K08956; AFG3 family protein
Gene Ontology GO:0016021; integral component of membrane GO:0008270zinc ion binding GO:0005524ATP binding GO:0004222metalloendopeptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT1G07510 : FTSH protease 10
RAP-DB (Rice) LOC_Os05g38400.1 : OsFtsH8 FtsH protease, homologue of AtFtsH3/10, expressed
MaizeGDB (Corn) Zm00025a037683
Brachypodium KQK05917 , PNT73170 , PNT73171 , PNT73172
Barley HORVU1Hr1G072490.10 , HORVU1Hr1G072490.9 , HORVU1Hr1G072490.8 , HORVU1Hr1G072490.5 , HORVU1Hr1G072490.4 , HORVU1Hr1G072490.7 , HORVU1Hr1G072490.6 , HORVU1Hr1G072490.3 , HORVU1Hr1G072490.2
Wheat TraesCS1B02G293000 , TraesCS1B02G293000 , TraesCS3A02G360800 , TraesCS3D02G354500 , TraesCS3D02G354500 , TraesCS3D02G354500 , TraesCS3B02G393200 , TraesCS3B02G393200 , TraesCS1D02G282900 , TraesCS1D02G282900 , TraesCS1A02G283800
Populus PNT19344 , PNT19346 , PNT19345 , PNT19343


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cDNA sequences
Sobic.009G162600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G340600 VHS and GAT domain containing protein, expressed -
2 Sobic.002G349100 pyridoxamine 5\'-phosphate oxidase family protein, putative, expressed -
3 Sobic.009G103000 ubiquitin family protein, putative, expressed -
4 Sobic.002G072400 zeta-carotene desaturase, chloroplast/chromoplast precursor, putative, expressed K00514: ZDS, zeta-carotene desaturase
5 Sobic.002G275100 response regulator receiver domain containing protein, expressed K12130: pseudo-response regulator 5
6 Sobic.003G105900 expressed protein -
7 Sobic.008G089900 PQ loop repeat domain containing protein, expressed K12386: cystinosin
8 Sobic.004G300100 hydrolase, alpha/beta fold family domain containing protein, expressed K07019: uncharacterized protein
9 Sobic.003G029500 zinc finger, C3HC4 type family protein, expressed -
10 Sobic.004G207400 hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed K03526: gcpE, (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase
11 Sobic.006G083800 expressed protein -
12 Sobic.006G051800 calmodulin-binding transcription activator 4, putative, expressed -
13 Sobic.003G264800 expressed protein -
14 Sobic.001G410000 P-protein, putative, expressed K05359: ADT, arogenate/prephenate dehydratase
15 Sobic.001G072700 expressed protein -
16 Sobic.008G172300 peroxisome assembly protein, putative, expressed K06664: PEX2, peroxin-2
17 Sobic.006G232600 amine oxidase, flavin-containing, domain containing protein, expressed K02293: PDS, 15-cis-phytoene desaturase
18 Sobic.010G013200 CPuORF21 - conserved peptide uORF-containing transcript, expressed K08829: male germ cell-associated kinase
19 Sobic.001G243200 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed K08967: mtnD, mtnZ, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
20 Sobic.006G233700 PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I


Gene co-expression network
sample Sobic009G162600 Sobic009G162600 Sobic003G340600 Sobic003G340600 Sobic009G162600--Sobic003G340600 Sobic002G349100 Sobic002G349100 Sobic009G162600--Sobic002G349100 Sobic009G103000 Sobic009G103000 Sobic009G162600--Sobic009G103000 Sobic002G072400 Sobic002G072400 Sobic009G162600--Sobic002G072400 Sobic002G275100 Sobic002G275100 Sobic009G162600--Sobic002G275100 Sobic003G105900 Sobic003G105900 Sobic009G162600--Sobic003G105900 Sobic008G089900 Sobic008G089900 Sobic009G162600--Sobic008G089900 Sobic004G300100 Sobic004G300100 Sobic009G162600--Sobic004G300100 Sobic003G029500 Sobic003G029500 Sobic009G162600--Sobic003G029500 Sobic008G172300 Sobic008G172300 Sobic003G340600--Sobic008G172300 Sobic003G221900 Sobic003G221900 Sobic003G340600--Sobic003G221900 Sobic002G167500 Sobic002G167500 Sobic003G340600--Sobic002G167500 Sobic010G092300 Sobic010G092300 Sobic003G340600--Sobic010G092300 Sobic003G398700 Sobic003G398700 Sobic003G340600--Sobic003G398700 Sobic003G340600--Sobic009G162600 Sobic004G181600 Sobic004G181600 Sobic003G340600--Sobic004G181600 Sobic010G013200 Sobic010G013200 Sobic003G340600--Sobic010G013200 Sobic006G086500 Sobic006G086500 Sobic003G340600--Sobic006G086500 Sobic002G349100--Sobic002G072400 Sobic002G129400 Sobic002G129400 Sobic002G349100--Sobic002G129400 Sobic004G317700 Sobic004G317700 Sobic002G349100--Sobic004G317700 Sobic008G081900 Sobic008G081900 Sobic002G349100--Sobic008G081900 Sobic004G207400 Sobic004G207400 Sobic002G349100--Sobic004G207400 Sobic001G219700 Sobic001G219700 Sobic002G349100--Sobic001G219700 Sobic004G238200 Sobic004G238200 Sobic002G349100--Sobic004G238200 Sobic002G349100--Sobic009G162600 Sobic002G349100--Sobic004G300100 Sobic007G087100 Sobic007G087100 Sobic009G103000--Sobic007G087100 Sobic001G077300 Sobic001G077300 Sobic009G103000--Sobic001G077300 Sobic009G170200 Sobic009G170200 Sobic009G103000--Sobic009G170200 Sobic009G073900 Sobic009G073900 Sobic009G103000--Sobic009G073900 Sobic003G003450 Sobic003G003450 Sobic009G103000--Sobic003G003450 Sobic006G232600 Sobic006G232600 Sobic009G103000--Sobic006G232600 Sobic006G213700 Sobic006G213700 Sobic009G103000--Sobic006G213700 Sobic001G378100 Sobic001G378100 Sobic009G103000--Sobic001G378100 Sobic006G212800 Sobic006G212800 Sobic009G103000--Sobic006G212800 Sobic002G072400--Sobic004G207400 Sobic002G072400--Sobic002G349100 Sobic002G072400--Sobic004G317700 Sobic002G072400--Sobic004G238200 Sobic002G072400--Sobic002G129400 Sobic004G307100 Sobic004G307100 Sobic002G072400--Sobic004G307100 Sobic004G281900 Sobic004G281900 Sobic002G072400--Sobic004G281900 Sobic007G166200 Sobic007G166200 Sobic002G072400--Sobic007G166200 Sobic002G081400 Sobic002G081400 Sobic002G072400--Sobic002G081400 Sobic009G259100 Sobic009G259100 Sobic002G275100--Sobic009G259100 Sobic003G380200 Sobic003G380200 Sobic002G275100--Sobic003G380200 Sobic004G127800 Sobic004G127800 Sobic002G275100--Sobic004G127800 Sobic010G100900 Sobic010G100900 Sobic002G275100--Sobic010G100900 Sobic010G223200 Sobic010G223200 Sobic002G275100--Sobic010G223200 Sobic002G132400 Sobic002G132400 Sobic002G275100--Sobic002G132400 Sobic004G271600 Sobic004G271600 Sobic002G275100--Sobic004G271600 Sobic007G006200 Sobic007G006200 Sobic002G275100--Sobic007G006200 Sobic006G191500 Sobic006G191500 Sobic002G275100--Sobic006G191500 Sobic009G040400 Sobic009G040400 Sobic003G105900--Sobic009G040400 Sobic003G298200 Sobic003G298200 Sobic003G105900--Sobic003G298200 Sobic003G264800 Sobic003G264800 Sobic003G105900--Sobic003G264800 Sobic003G105900--Sobic009G162600 Sobic003G107500 Sobic003G107500 Sobic003G105900--Sobic003G107500 Sobic005G038500 Sobic005G038500 Sobic003G105900--Sobic005G038500 Sobic003G105900--Sobic003G029500 Sobic003G105900--Sobic009G103000 Sobic007G079400 Sobic007G079400 Sobic003G105900--Sobic007G079400 Sobic006G083800 Sobic006G083800 Sobic008G089900--Sobic006G083800 Sobic008G089900--Sobic009G162600 Sobic004G103000 Sobic004G103000 Sobic008G089900--Sobic004G103000 Sobic002G204200 Sobic002G204200 Sobic008G089900--Sobic002G204200 Sobic002G001000 Sobic002G001000 Sobic008G089900--Sobic002G001000 Sobic001G414500 Sobic001G414500 Sobic008G089900--Sobic001G414500 Sobic001G243200 Sobic001G243200 Sobic008G089900--Sobic001G243200 Sobic009G187400 Sobic009G187400 Sobic008G089900--Sobic009G187400 Sobic009G207300 Sobic009G207300 Sobic008G089900--Sobic009G207300 Sobic010G231500 Sobic010G231500 Sobic004G300100--Sobic010G231500 Sobic002G356900 Sobic002G356900 Sobic004G300100--Sobic002G356900 Sobic004G300100--Sobic004G317700 Sobic004G300100--Sobic002G081400 Sobic004G300100--Sobic004G271600 Sobic004G300100--Sobic009G170200 Sobic004G300100--Sobic002G132400 Sobic004G165900 Sobic004G165900 Sobic004G300100--Sobic004G165900 Sobic004G252500 Sobic004G252500 Sobic004G300100--Sobic004G252500 Sobic005G201000 Sobic005G201000 Sobic003G029500--Sobic005G201000 Sobic005G132000 Sobic005G132000 Sobic003G029500--Sobic005G132000 Sobic006G051800 Sobic006G051800 Sobic003G029500--Sobic006G051800 Sobic003G029500--Sobic009G040400 Sobic003G029500--Sobic003G003450 Sobic004G312600 Sobic004G312600 Sobic003G029500--Sobic004G312600 Sobic010G092350 Sobic010G092350 Sobic003G029500--Sobic010G092350 Sobic005G106600 Sobic005G106600 Sobic003G029500--Sobic005G106600 Sobic003G220100 Sobic003G220100 Sobic003G029500--Sobic003G220100
Octagon: transcription factors


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