Gene annotation
Transcriptome id Sobic.001G243200.1
Synonym ARD4, ATARD4
Functional annotation 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed
UniProt A0A1B6QKN8
Pfam PF07883
Panther DB PTHR23418 PTHR23418:SF4
NCBI CDD KOG2107; Uncharacterized conserved protein, contains double-stranded beta-helix domain
KEGG Orthology K08967; mtnD, mtnZ, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
Gene Ontology GO:0010309; acireductone dioxygenase [iron(II)-requiring] activity


Orthologs (automatic annotation)
TAIR AT5G43850 : RmlC-like cupins superfamily protein
RAP-DB (Rice) LOC_Os10g28360.1 : 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G093100 OsAGSW1(Ortholog in rice:Li and Li 2015)(PubMedID : 31659923)@ ELMO/CED-12 family protein, putative, expressed -
2 Sobic.006G259600 methylthioribose kinase, putative, expressed K00899: 5-methylthioribose kinase
3 Sobic.006G065100 ERD1 protein, chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
4 Sobic.001G333800 MYB family transcription factor, putative, expressed -
5 Sobic.001G133000 expressed protein -
6 Sobic.003G166200 expressed protein -
7 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
8 Sobic.002G129400 ABC transporter, ATP-binding protein, putative, expressed -
9 Sobic.001G077300 thioredoxin, putative, expressed -
10 Sobic.006G212800 expressed protein -
11 Sobic.002G072400 zeta-carotene desaturase, chloroplast/chromoplast precursor, putative, expressed K00514: ZDS, zeta-carotene desaturase
12 Sobic.003G203300 stress regulated protein, putative, expressed -
13 Sobic.001G359300 cytochrome P450, putative, expressed -
14 Sobic.004G103000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@spotted leaf 11, putative, expressed -
15 Sobic.003G264800 expressed protein -
16 Sobic.009G219100 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"serine/threonine-protein kinase SNT7, chloroplast precursor"("PubMedID : 26759170,PubMedID : 24597475")@serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed -
17 Sobic.009G103000 ubiquitin family protein, putative, expressed -
18 Sobic.002G206300 tsi1-interacting protein TSIP1, putative, expressed -
19 Sobic.003G073800 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
20 Sobic.007G166200 PPDK(PubMedID : 19549309)@NADP-malete dehydrogenase(PubMedID : 26904072)@NADP-malate dehydrogenase (NADP-MDH)(PubMedID : 16243851)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)


Gene co-expression network
sample Sobic001G243200 Sobic001G243200 Sobic009G093100 Sobic009G093100 Sobic001G243200--Sobic009G093100 Sobic006G259600 Sobic006G259600 Sobic001G243200--Sobic006G259600 Sobic006G065100 Sobic006G065100 Sobic001G243200--Sobic006G065100 Sobic001G333800 Sobic001G333800 Sobic001G243200--Sobic001G333800 Sobic001G133000 Sobic001G133000 Sobic001G243200--Sobic001G133000 Sobic003G166200 Sobic003G166200 Sobic001G243200--Sobic003G166200 Sobic006G219600 Sobic006G219600 Sobic001G243200--Sobic006G219600 Sobic002G129400 Sobic002G129400 Sobic001G243200--Sobic002G129400 Sobic001G077300 Sobic001G077300 Sobic001G243200--Sobic001G077300 Sobic009G093100--Sobic001G077300 Sobic001G359300 Sobic001G359300 Sobic009G093100--Sobic001G359300 Sobic004G019800 Sobic004G019800 Sobic009G093100--Sobic004G019800 Sobic009G093100--Sobic006G065100 Sobic001G536700 Sobic001G536700 Sobic009G093100--Sobic001G536700 Sobic009G073900 Sobic009G073900 Sobic009G093100--Sobic009G073900 Sobic001G378100 Sobic001G378100 Sobic009G093100--Sobic001G378100 Sobic002G206300 Sobic002G206300 Sobic009G093100--Sobic002G206300 Sobic009G093100--Sobic001G333800 Sobic006G090100 Sobic006G090100 Sobic006G259600--Sobic006G090100 Sobic001G207800 Sobic001G207800 Sobic006G259600--Sobic001G207800 Sobic006G259600--Sobic003G166200 Sobic002G081400 Sobic002G081400 Sobic006G259600--Sobic002G081400 Sobic006G212800 Sobic006G212800 Sobic006G259600--Sobic006G212800 Sobic006G259600--Sobic009G073900 Sobic001G509200 Sobic001G509200 Sobic006G259600--Sobic001G509200 Sobic006G259600--Sobic001G243200 Sobic006G259600--Sobic001G077300 Sobic006G065100--Sobic009G093100 Sobic006G065100--Sobic001G077300 Sobic004G127800 Sobic004G127800 Sobic006G065100--Sobic004G127800 Sobic003G073800 Sobic003G073800 Sobic006G065100--Sobic003G073800 Sobic006G065100--Sobic001G378100 Sobic006G065100--Sobic006G090100 Sobic006G065100--Sobic002G081400 Sobic005G179300 Sobic005G179300 Sobic006G065100--Sobic005G179300 Sobic006G065100--Sobic001G333800 Sobic001G333800--Sobic001G359300 Sobic005G106600 Sobic005G106600 Sobic001G333800--Sobic005G106600 Sobic001G333800--Sobic009G093100 Sobic001G333800--Sobic006G090100 Sobic001G303200 Sobic001G303200 Sobic001G333800--Sobic001G303200 Sobic003G220100 Sobic003G220100 Sobic001G333800--Sobic003G220100 Sobic009G038900 Sobic009G038900 Sobic001G333800--Sobic009G038900 Sobic001G333800--Sobic009G073900 Sobic001G333800--Sobic001G077300 Sobic001G133000--Sobic005G106600 Sobic001G133000--Sobic006G219600 Sobic001G133000--Sobic009G038900 Sobic001G133000--Sobic003G220100 Sobic006G133900 Sobic006G133900 Sobic001G133000--Sobic006G133900 Sobic001G133000--Sobic001G333800 Sobic001G133000--Sobic001G243200 Sobic009G201300 Sobic009G201300 Sobic001G133000--Sobic009G201300 Sobic009G215500 Sobic009G215500 Sobic001G133000--Sobic009G215500 Sobic003G166200--Sobic006G259600 Sobic003G166200--Sobic001G333800 Sobic003G166200--Sobic001G207800 Sobic003G166200--Sobic006G090100 Sobic001G258200 Sobic001G258200 Sobic003G166200--Sobic001G258200 Sobic003G166200--Sobic009G093100 Sobic003G186900 Sobic003G186900 Sobic003G166200--Sobic003G186900 Sobic006G221000 Sobic006G221000 Sobic003G166200--Sobic006G221000 Sobic003G166200--Sobic001G303200 Sobic003G155100 Sobic003G155100 Sobic006G219600--Sobic003G155100 Sobic006G219600--Sobic009G201300 Sobic002G124600 Sobic002G124600 Sobic006G219600--Sobic002G124600 Sobic006G050700 Sobic006G050700 Sobic006G219600--Sobic006G050700 Sobic001G298900 Sobic001G298900 Sobic006G219600--Sobic001G298900 Sobic006G219600--Sobic006G133900 Sobic006G219600--Sobic001G133000 Sobic006G219600--Sobic005G106600 Sobic005G084500 Sobic005G084500 Sobic006G219600--Sobic005G084500 Sobic007G166200 Sobic007G166200 Sobic002G129400--Sobic007G166200 Sobic008G081900 Sobic008G081900 Sobic002G129400--Sobic008G081900 Sobic002G072400 Sobic002G072400 Sobic002G129400--Sobic002G072400 Sobic002G349100 Sobic002G349100 Sobic002G129400--Sobic002G349100 Sobic002G129400--Sobic002G081400 Sobic002G129400--Sobic009G093100 Sobic003G203300 Sobic003G203300 Sobic002G129400--Sobic003G203300 Sobic002G129400--Sobic006G065100 Sobic001G219700 Sobic001G219700 Sobic002G129400--Sobic001G219700 Sobic001G077300--Sobic009G073900 Sobic001G077300--Sobic006G090100 Sobic006G235400 Sobic006G235400 Sobic001G077300--Sobic006G235400 Sobic001G077300--Sobic004G127800 Sobic001G077300--Sobic001G359300 Sobic001G077300--Sobic009G093100 Sobic003G341300 Sobic003G341300 Sobic001G077300--Sobic003G341300 Sobic001G077300--Sobic006G212800 Sobic003G003450 Sobic003G003450 Sobic001G077300--Sobic003G003450
Octagon: transcription factors


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