Gene annotation
Transcriptome id Sobic.004G103000.1
Synonym ATPUB17, PUB17, Sb04g008430
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
spotted leaf 11, putative, expressed
UniProt C5XYM3
Pfam PF00514 PF04564
Panther DB PTHR23315 PTHR23315:SF76
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0016567protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT1G29340 : plant U-box 17
RAP-DB (Rice) LOC_Os02g13960.1 : spotted leaf 11, putative, expressed
MaizeGDB (Corn) Zm00025a020041 , Zm00025a034507
Brachypodium KQJ94171
Barley HORVU6Hr1G041430.2 , HORVU6Hr1G041430.3 , HORVU6Hr1G041430.1 , HORVU6Hr1G041430.6 , HORVU6Hr1G041430.7 , HORVU6Hr1G041430.4 , HORVU6Hr1G041430.5 , HORVU6Hr1G041430.8
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G243200 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed K08967: mtnD, mtnZ, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
2 Sobic.006G259600 methylthioribose kinase, putative, expressed K00899: 5-methylthioribose kinase
3 Sobic.008G167600 VTC2, putative, expressed -
4 Sobic.001G352400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.001G476700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
6 Sobic.004G169000 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
7 Sobic.010G074300 smr domain containing protein, expressed -
8 Sobic.001G333800 MYB family transcription factor, putative, expressed -
9 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
10 Sobic.003G166200 expressed protein -
11 Sobic.007G190000 expressed protein -
12 Sobic.001G133000 expressed protein -
13 Sobic.001G136800 dual specificity protein phosphatase, putative, expressed -
14 Sobic.008G089900 PQ loop repeat domain containing protein, expressed K12386: cystinosin
15 Sobic.001G303200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@flavin-containing monooxygenase family protein, putative, expressed -
16 Sobic.003G220100 - -
17 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein
18 Sobic.002G382700 heat shock protein DnaJ, putative, expressed -
19 Sobic.004G189200 OsFBK9 - F-box domain and kelch repeat containing protein, expressed -
20 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2


Gene co-expression network
sample Sobic004G103000 Sobic004G103000 Sobic001G243200 Sobic001G243200 Sobic004G103000--Sobic001G243200 Sobic006G259600 Sobic006G259600 Sobic004G103000--Sobic006G259600 Sobic008G167600 Sobic008G167600 Sobic004G103000--Sobic008G167600 Sobic001G352400 Sobic001G352400 Sobic004G103000--Sobic001G352400 Sobic001G476700 Sobic001G476700 Sobic004G103000--Sobic001G476700 Sobic004G169000 Sobic004G169000 Sobic004G103000--Sobic004G169000 Sobic010G074300 Sobic010G074300 Sobic004G103000--Sobic010G074300 Sobic001G333800 Sobic001G333800 Sobic004G103000--Sobic001G333800 Sobic005G106600 Sobic005G106600 Sobic004G103000--Sobic005G106600 Sobic009G093100 Sobic009G093100 Sobic001G243200--Sobic009G093100 Sobic001G243200--Sobic006G259600 Sobic006G065100 Sobic006G065100 Sobic001G243200--Sobic006G065100 Sobic001G243200--Sobic001G333800 Sobic001G133000 Sobic001G133000 Sobic001G243200--Sobic001G133000 Sobic003G166200 Sobic003G166200 Sobic001G243200--Sobic003G166200 Sobic006G219600 Sobic006G219600 Sobic001G243200--Sobic006G219600 Sobic002G129400 Sobic002G129400 Sobic001G243200--Sobic002G129400 Sobic001G077300 Sobic001G077300 Sobic001G243200--Sobic001G077300 Sobic006G090100 Sobic006G090100 Sobic006G259600--Sobic006G090100 Sobic001G207800 Sobic001G207800 Sobic006G259600--Sobic001G207800 Sobic006G259600--Sobic003G166200 Sobic002G081400 Sobic002G081400 Sobic006G259600--Sobic002G081400 Sobic006G212800 Sobic006G212800 Sobic006G259600--Sobic006G212800 Sobic009G073900 Sobic009G073900 Sobic006G259600--Sobic009G073900 Sobic001G509200 Sobic001G509200 Sobic006G259600--Sobic001G509200 Sobic006G259600--Sobic001G243200 Sobic006G259600--Sobic001G077300 Sobic006G257800 Sobic006G257800 Sobic008G167600--Sobic006G257800 Sobic004G151300 Sobic004G151300 Sobic008G167600--Sobic004G151300 Sobic002G291800 Sobic002G291800 Sobic008G167600--Sobic002G291800 Sobic004G312600 Sobic004G312600 Sobic008G167600--Sobic004G312600 Sobic004G127800 Sobic004G127800 Sobic008G167600--Sobic004G127800 Sobic002G293500 Sobic002G293500 Sobic008G167600--Sobic002G293500 Sobic008G167600--Sobic002G081400 Sobic008G167600--Sobic006G090100 Sobic008G167600--Sobic001G333800 Sobic004G281800 Sobic004G281800 Sobic001G352400--Sobic004G281800 Sobic010G275700 Sobic010G275700 Sobic001G352400--Sobic010G275700 Sobic002G382700 Sobic002G382700 Sobic001G352400--Sobic002G382700 Sobic004G322700 Sobic004G322700 Sobic001G352400--Sobic004G322700 Sobic002G119100 Sobic002G119100 Sobic001G352400--Sobic002G119100 Sobic008G038500 Sobic008G038500 Sobic001G352400--Sobic008G038500 Sobic005G101200 Sobic005G101200 Sobic001G352400--Sobic005G101200 Sobic001G352400--Sobic004G169000 Sobic009G038900 Sobic009G038900 Sobic001G352400--Sobic009G038900 Sobic007G160700 Sobic007G160700 Sobic001G476700--Sobic007G160700 Sobic001G476700--Sobic004G103000 Sobic001G476700--Sobic004G169000 Sobic004G118200 Sobic004G118200 Sobic001G476700--Sobic004G118200 Sobic003G229300 Sobic003G229300 Sobic001G476700--Sobic003G229300 Sobic007G190000 Sobic007G190000 Sobic001G476700--Sobic007G190000 Sobic001G476700--Sobic010G074300 Sobic002G386100 Sobic002G386100 Sobic001G476700--Sobic002G386100 Sobic004G179300 Sobic004G179300 Sobic001G476700--Sobic004G179300 Sobic004G169000--Sobic001G352400 Sobic002G341000 Sobic002G341000 Sobic004G169000--Sobic002G341000 Sobic004G169000--Sobic001G333800 Sobic004G169000--Sobic004G281800 Sobic006G050700 Sobic006G050700 Sobic004G169000--Sobic006G050700 Sobic006G175800 Sobic006G175800 Sobic004G169000--Sobic006G175800 Sobic004G169000--Sobic003G229300 Sobic004G042200 Sobic004G042200 Sobic004G169000--Sobic004G042200 Sobic004G169000--Sobic005G106600 Sobic010G147100 Sobic010G147100 Sobic010G074300--Sobic010G147100 Sobic010G074300--Sobic004G118200 Sobic010G074300--Sobic007G190000 Sobic001G080700 Sobic001G080700 Sobic010G074300--Sobic001G080700 Sobic002G311100 Sobic002G311100 Sobic010G074300--Sobic002G311100 Sobic010G131900 Sobic010G131900 Sobic010G074300--Sobic010G131900 Sobic009G074400 Sobic009G074400 Sobic010G074300--Sobic009G074400 Sobic003G316500 Sobic003G316500 Sobic010G074300--Sobic003G316500 Sobic001G268200 Sobic001G268200 Sobic010G074300--Sobic001G268200 Sobic001G359300 Sobic001G359300 Sobic001G333800--Sobic001G359300 Sobic001G333800--Sobic005G106600 Sobic001G333800--Sobic009G093100 Sobic001G333800--Sobic006G090100 Sobic001G303200 Sobic001G303200 Sobic001G333800--Sobic001G303200 Sobic003G220100 Sobic003G220100 Sobic001G333800--Sobic003G220100 Sobic001G333800--Sobic009G038900 Sobic001G333800--Sobic009G073900 Sobic001G333800--Sobic001G077300 Sobic005G106600--Sobic003G220100 Sobic005G106600--Sobic001G333800 Sobic005G106600--Sobic009G038900 Sobic005G106600--Sobic001G133000 Sobic005G106600--Sobic004G312600 Sobic007G058100 Sobic007G058100 Sobic005G106600--Sobic007G058100 Sobic007G136200 Sobic007G136200 Sobic005G106600--Sobic007G136200 Sobic005G106600--Sobic006G219600 Sobic001G378100 Sobic001G378100 Sobic005G106600--Sobic001G378100
Octagon: transcription factors


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