Gene annotation
Transcriptome id Sobic.004G312600.1
Synonym FUS1, EMB168, DET340, COP1, Sb04g034480, ATCOP1
Functional annotation COP1, putative, expressed
UniProt A0A194YSG7
Pfam PF00097 PF00400
Panther DB PTHR22847 PTHR22847:SF451
NCBI CDD KOG0265; U5 snRNP-specific protein-like factor and related proteins
KEGG Orthology K10143; RFWD2, E3 ubiquitin-protein ligase RFWD2
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G32950 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os02g53140.1 : COP1, putative, expressed
MaizeGDB (Corn) Zm00025a033067 , Zm00025a022256
Brachypodium KQK01702 , PNT69556
Barley HORVU6Hr1G079670.1
Wheat TraesCS6B02G356400 , TraesCS6B02G356400 , TraesCS6A02G326100 , TraesCS6D02G305800 , TraesCS6D02G305800
Populus -


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cDNA sequences
Sobic.004G312600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G227100 expressed protein -
2 Sobic.004G127800 AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
3 Sobic.008G038500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endonuclease III-like protein 1, putative, expressed K10773: endonuclease III
4 Sobic.001G331600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATP-dependent protease, putative, expressed -
5 Sobic.002G382700 heat shock protein DnaJ, putative, expressed -
6 Sobic.002G293500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sialin, putative, expressed -
7 Sobic.001G077300 thioredoxin, putative, expressed -
8 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
9 Sobic.003G220100 - -
10 Sobic.004G322600 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain(PubMedID : 26465154)@protein kinase domain containing protein, expressed -
11 Sobic.007G058100 light-mediated development protein DET1, putative, expressed K10571: de-etiolated-1
12 Sobic.001G333800 MYB family transcription factor, putative, expressed -
13 Sobic.010G150100 expressed protein -
14 Sobic.003G271400 chloride transporter, chloride channel family, putative, expressed -
15 Sobic.009G194500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.004G322700 - -
17 Sobic.003G003450 - K01177: beta-amylase
18 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein
19 Sobic.001G485100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.004G151300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF803 domain containing, putative, expressed -


Gene co-expression network
sample Sobic004G312600 Sobic004G312600 Sobic007G227100 Sobic007G227100 Sobic004G312600--Sobic007G227100 Sobic004G127800 Sobic004G127800 Sobic004G312600--Sobic004G127800 Sobic008G038500 Sobic008G038500 Sobic004G312600--Sobic008G038500 Sobic001G331600 Sobic001G331600 Sobic004G312600--Sobic001G331600 Sobic002G382700 Sobic002G382700 Sobic004G312600--Sobic002G382700 Sobic002G293500 Sobic002G293500 Sobic004G312600--Sobic002G293500 Sobic001G077300 Sobic001G077300 Sobic004G312600--Sobic001G077300 Sobic005G106600 Sobic005G106600 Sobic004G312600--Sobic005G106600 Sobic003G220100 Sobic003G220100 Sobic004G312600--Sobic003G220100 Sobic007G227100--Sobic004G312600 Sobic007G227100--Sobic004G127800 Sobic007G227100--Sobic001G077300 Sobic007G227100--Sobic001G331600 Sobic007G227100--Sobic008G038500 Sobic007G227100--Sobic002G382700 Sobic006G235400 Sobic006G235400 Sobic007G227100--Sobic006G235400 Sobic003G341300 Sobic003G341300 Sobic007G227100--Sobic003G341300 Sobic001G485100 Sobic001G485100 Sobic007G227100--Sobic001G485100 Sobic004G127800--Sobic007G227100 Sobic004G127800--Sobic001G077300 Sobic006G235300 Sobic006G235300 Sobic004G127800--Sobic006G235300 Sobic004G127800--Sobic004G312600 Sobic004G127800--Sobic006G235400 Sobic006G090100 Sobic006G090100 Sobic004G127800--Sobic006G090100 Sobic004G127800--Sobic001G331600 Sobic006G191500 Sobic006G191500 Sobic004G127800--Sobic006G191500 Sobic009G073900 Sobic009G073900 Sobic004G127800--Sobic009G073900 Sobic008G038500--Sobic004G312600 Sobic008G038500--Sobic007G227100 Sobic009G194500 Sobic009G194500 Sobic008G038500--Sobic009G194500 Sobic002G119100 Sobic002G119100 Sobic008G038500--Sobic002G119100 Sobic004G322600 Sobic004G322600 Sobic008G038500--Sobic004G322600 Sobic008G038500--Sobic002G382700 Sobic007G058100 Sobic007G058100 Sobic008G038500--Sobic007G058100 Sobic001G244600 Sobic001G244600 Sobic008G038500--Sobic001G244600 Sobic004G322700 Sobic004G322700 Sobic008G038500--Sobic004G322700 Sobic001G331600--Sobic001G485100 Sobic004G128900 Sobic004G128900 Sobic001G331600--Sobic004G128900 Sobic004G153900 Sobic004G153900 Sobic001G331600--Sobic004G153900 Sobic002G161400 Sobic002G161400 Sobic001G331600--Sobic002G161400 Sobic001G046000 Sobic001G046000 Sobic001G331600--Sobic001G046000 Sobic001G331600--Sobic004G312600 Sobic001G331600--Sobic007G227100 Sobic001G331600--Sobic006G191500 Sobic004G344600 Sobic004G344600 Sobic001G331600--Sobic004G344600 Sobic001G207800 Sobic001G207800 Sobic002G382700--Sobic001G207800 Sobic001G258200 Sobic001G258200 Sobic002G382700--Sobic001G258200 Sobic002G382700--Sobic006G090100 Sobic002G382700--Sobic003G341300 Sobic001G283100 Sobic001G283100 Sobic002G382700--Sobic001G283100 Sobic002G382700--Sobic007G058100 Sobic002G382700--Sobic001G077300 Sobic002G162400 Sobic002G162400 Sobic002G382700--Sobic002G162400 Sobic002G382700--Sobic007G227100 Sobic002G293500--Sobic004G153900 Sobic002G293500--Sobic001G046000 Sobic002G293500--Sobic002G161400 Sobic002G293500--Sobic001G331600 Sobic002G293500--Sobic004G312600 Sobic002G293500--Sobic004G127800 Sobic002G293500--Sobic007G227100 Sobic010G131700 Sobic010G131700 Sobic002G293500--Sobic010G131700 Sobic002G293500--Sobic001G485100 Sobic001G077300--Sobic009G073900 Sobic001G077300--Sobic006G090100 Sobic001G077300--Sobic006G235400 Sobic001G077300--Sobic004G127800 Sobic001G359300 Sobic001G359300 Sobic001G077300--Sobic001G359300 Sobic009G093100 Sobic009G093100 Sobic001G077300--Sobic009G093100 Sobic001G077300--Sobic003G341300 Sobic006G212800 Sobic006G212800 Sobic001G077300--Sobic006G212800 Sobic003G003450 Sobic003G003450 Sobic001G077300--Sobic003G003450 Sobic005G106600--Sobic003G220100 Sobic001G333800 Sobic001G333800 Sobic005G106600--Sobic001G333800 Sobic009G038900 Sobic009G038900 Sobic005G106600--Sobic009G038900 Sobic001G133000 Sobic001G133000 Sobic005G106600--Sobic001G133000 Sobic005G106600--Sobic004G312600 Sobic005G106600--Sobic007G058100 Sobic007G136200 Sobic007G136200 Sobic005G106600--Sobic007G136200 Sobic006G219600 Sobic006G219600 Sobic005G106600--Sobic006G219600 Sobic001G378100 Sobic001G378100 Sobic005G106600--Sobic001G378100 Sobic003G220100--Sobic005G106600 Sobic003G220100--Sobic001G333800 Sobic003G220100--Sobic004G312600 Sobic003G220100--Sobic007G058100 Sobic003G220100--Sobic009G038900 Sobic003G220100--Sobic001G378100 Sobic001G169900 Sobic001G169900 Sobic003G220100--Sobic001G169900 Sobic003G073800 Sobic003G073800 Sobic003G220100--Sobic003G073800 Sobic010G002700 Sobic010G002700 Sobic003G220100--Sobic010G002700
Octagon: transcription factors


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