Gene annotation
Transcriptome id Sobic.008G038500.3,Sobic.008G038500.2
Synonym ATNTH1, Sb08g003320
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
endonuclease III-like protein 1, putative, expressed
UniProt C5YRT7 , A0A1Z5R4S7
Pfam PF00730
Panther DB PTHR10359
NCBI CDD KOG1921; Endonuclease III
KEGG Orthology K10773; endonuclease III
Gene Ontology GO:0006284; base-excision repair


Orthologs (automatic annotation)
TAIR AT2G31450 : DNA glycosylase superfamily protein
RAP-DB (Rice) LOC_Os11g16580.1 : endonuclease III-like protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a053904
Brachypodium KQJ88670 , PNT63727 , PNT63728 , PNT63729
Barley -
Wheat TraesCS4D02G081200 , TraesCS4B02G083100 , TraesCS4B02G083100 , TraesCS4A02G232700 , TraesCS4A02G232700 , TraesCS4A02G232700
Populus -


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cDNA sequences
Sobic.008G038500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
2 Sobic.007G227100 expressed protein -
3 Sobic.009G194500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.002G119100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@integral membrane transporter family protein, putative, expressed -
5 Sobic.004G322600 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain(PubMedID : 26465154)@protein kinase domain containing protein, expressed -
6 Sobic.002G382700 heat shock protein DnaJ, putative, expressed -
7 Sobic.007G058100 light-mediated development protein DET1, putative, expressed K10571: de-etiolated-1
8 Sobic.001G244600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KIP1, putative, expressed -
9 Sobic.004G322700 - -
10 Sobic.001G331600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATP-dependent protease, putative, expressed -
11 Sobic.001G263100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
12 Sobic.004G127800 AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
13 Sobic.006G161500 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
14 Sobic.002G293500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sialin, putative, expressed -
15 Sobic.001G485100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.001G077300 thioredoxin, putative, expressed -
17 Sobic.004G128900 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
18 Sobic.002G162400 potassium channel protein, putative, expressed K05389: potassium channel subfamily K, other eukaryote
19 Sobic.003G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein


Gene co-expression network
sample Sobic008G038500 Sobic008G038500 Sobic004G312600 Sobic004G312600 Sobic008G038500--Sobic004G312600 Sobic007G227100 Sobic007G227100 Sobic008G038500--Sobic007G227100 Sobic009G194500 Sobic009G194500 Sobic008G038500--Sobic009G194500 Sobic002G119100 Sobic002G119100 Sobic008G038500--Sobic002G119100 Sobic004G322600 Sobic004G322600 Sobic008G038500--Sobic004G322600 Sobic002G382700 Sobic002G382700 Sobic008G038500--Sobic002G382700 Sobic007G058100 Sobic007G058100 Sobic008G038500--Sobic007G058100 Sobic001G244600 Sobic001G244600 Sobic008G038500--Sobic001G244600 Sobic004G322700 Sobic004G322700 Sobic008G038500--Sobic004G322700 Sobic004G312600--Sobic007G227100 Sobic004G127800 Sobic004G127800 Sobic004G312600--Sobic004G127800 Sobic004G312600--Sobic008G038500 Sobic001G331600 Sobic001G331600 Sobic004G312600--Sobic001G331600 Sobic004G312600--Sobic002G382700 Sobic002G293500 Sobic002G293500 Sobic004G312600--Sobic002G293500 Sobic001G077300 Sobic001G077300 Sobic004G312600--Sobic001G077300 Sobic005G106600 Sobic005G106600 Sobic004G312600--Sobic005G106600 Sobic003G220100 Sobic003G220100 Sobic004G312600--Sobic003G220100 Sobic007G227100--Sobic004G312600 Sobic007G227100--Sobic004G127800 Sobic007G227100--Sobic001G077300 Sobic007G227100--Sobic001G331600 Sobic007G227100--Sobic008G038500 Sobic007G227100--Sobic002G382700 Sobic006G235400 Sobic006G235400 Sobic007G227100--Sobic006G235400 Sobic003G341300 Sobic003G341300 Sobic007G227100--Sobic003G341300 Sobic001G485100 Sobic001G485100 Sobic007G227100--Sobic001G485100 Sobic009G194500--Sobic002G119100 Sobic006G161500 Sobic006G161500 Sobic009G194500--Sobic006G161500 Sobic010G231300 Sobic010G231300 Sobic009G194500--Sobic010G231300 Sobic009G194500--Sobic004G322600 Sobic009G194500--Sobic008G038500 Sobic003G314000 Sobic003G314000 Sobic009G194500--Sobic003G314000 Sobic007G140700 Sobic007G140700 Sobic009G194500--Sobic007G140700 Sobic009G194500--Sobic004G127800 Sobic009G194500--Sobic006G235400 Sobic002G119100--Sobic009G194500 Sobic002G119100--Sobic004G322600 Sobic002G119100--Sobic006G161500 Sobic002G119100--Sobic008G038500 Sobic002G119100--Sobic004G127800 Sobic002G119100--Sobic001G244600 Sobic002G119100--Sobic004G322700 Sobic002G119100--Sobic007G227100 Sobic002G119100--Sobic002G293500 Sobic004G322600--Sobic004G322700 Sobic004G322600--Sobic002G119100 Sobic004G322600--Sobic006G161500 Sobic004G322600--Sobic009G194500 Sobic004G035100 Sobic004G035100 Sobic004G322600--Sobic004G035100 Sobic004G322600--Sobic008G038500 Sobic004G322600--Sobic001G331600 Sobic004G322600--Sobic007G227100 Sobic004G322600--Sobic001G244600 Sobic001G207800 Sobic001G207800 Sobic002G382700--Sobic001G207800 Sobic001G258200 Sobic001G258200 Sobic002G382700--Sobic001G258200 Sobic006G090100 Sobic006G090100 Sobic002G382700--Sobic006G090100 Sobic002G382700--Sobic003G341300 Sobic001G283100 Sobic001G283100 Sobic002G382700--Sobic001G283100 Sobic002G382700--Sobic007G058100 Sobic002G382700--Sobic001G077300 Sobic002G162400 Sobic002G162400 Sobic002G382700--Sobic002G162400 Sobic002G382700--Sobic007G227100 Sobic001G263100 Sobic001G263100 Sobic007G058100--Sobic001G263100 Sobic001G217900 Sobic001G217900 Sobic007G058100--Sobic001G217900 Sobic004G082300 Sobic004G082300 Sobic007G058100--Sobic004G082300 Sobic007G058100--Sobic001G258200 Sobic007G058100--Sobic003G341300 Sobic008G129900 Sobic008G129900 Sobic007G058100--Sobic008G129900 Sobic004G143300 Sobic004G143300 Sobic007G058100--Sobic004G143300 Sobic009G256100 Sobic009G256100 Sobic007G058100--Sobic009G256100 Sobic001G345100 Sobic001G345100 Sobic007G058100--Sobic001G345100 Sobic001G244600--Sobic008G129900 Sobic010G104800 Sobic010G104800 Sobic001G244600--Sobic010G104800 Sobic001G244600--Sobic006G161500 Sobic001G244600--Sobic009G256100 Sobic001G073300 Sobic001G073300 Sobic001G244600--Sobic001G073300 Sobic001G244600--Sobic007G058100 Sobic001G244600--Sobic001G217900 Sobic001G244600--Sobic008G038500 Sobic001G244600--Sobic010G231300 Sobic004G322700--Sobic004G322600 Sobic004G322700--Sobic002G382700 Sobic004G322700--Sobic008G038500 Sobic004G322700--Sobic002G119100 Sobic004G322700--Sobic001G244600 Sobic004G322700--Sobic001G331600 Sobic004G322700--Sobic004G312600 Sobic004G322700--Sobic007G058100 Sobic004G322700--Sobic007G227100
Octagon: transcription factors


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